A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection

scientific article published on 26 August 2019

A cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1073/PNAS.1906320116
P932PMC publication ID6744880
P698PubMed publication ID31451660

P2093author name stringIwijn De Vlaminck
Manikkam Suthanthiran
Darshana Dadhania
Philip Burnham
John Richard Lee
Matthew Pellan Cheng
Alexandre Pellan Cheng
P2860cites workFragment Length of Circulating Tumor DNAQ27308628
Single-stranded DNA library preparation uncovers the origin and diversity of ultrashort cell-free DNA in plasmaQ28601304
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Actionable diagnosis of neuroleptospirosis by next-generation sequencingQ34053612
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Circulating cell-free DNA enables noninvasive diagnosis of heart transplant rejection.Q35078413
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Polyomavirus-associated nephropathy in renal transplantation: interdisciplinary analyses and recommendationsQ36136619
Noninvasive monitoring of infection and rejection after lung transplantationQ36238500
Cell-free DNA Comprises an In Vivo Nucleosome Footprint that Informs Its Tissues-Of-OriginQ36468959
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Host gene expression classifiers diagnose acute respiratory illness etiologyQ36998590
The responses of macrophages in interaction with neutrophils that undergo NETosisQ38837148
Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA.Q38927321
Donor-Derived Cell-Free DNA Is a Novel Universal Biomarker for Allograft Rejection in Solid Organ TransplantationQ40326468
5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages.Q42059581
Urinary tract infections in solid organ transplantationQ42272264
Genomewide bisulfite sequencing reveals the origin and time-dependent fragmentation of urinary cfDNA.Q50871595
Urinary cell-free DNA is a versatile analyte for monitoring infections of the urinary tract.Q55311645
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Integrating host response and unbiased microbe detection for lower respiratory tract infection diagnosis in critically ill adultsQ60936761
Phagocytosis and degradation of DNA‐anti‐DNA complexes by human phagocytes I. Assay conditions, quantitative aspects and differences between human blood monocytes and neutrophilsQ64390699
Degradation of DNA by bisulfite treatmentQ79717292
Polyomavirus BK versus JC replication and nephropathy in renal transplant recipients: a prospective evaluationQ80798766
Analytical and clinical validation of a microbial cell-free DNA sequencing test for infectious diseaseQ91451149
UMAP: Uniform Manifold Approximation and ProjectionQ107272666
P433issue37
P921main subjectmetagenomicsQ903778
P1104number of pages7
P304page(s)18738-18744
P577publication date2019-08-26
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleA cell-free DNA metagenomic sequencing assay that integrates the host injury response to infection
P478volume116

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cites work (P2860)
Q94562250Liquid biopsy for infectious diseases: a focus on microbial cell-free DNA sequencing
Q89662507Separating the signal from the noise in metagenomic cell-free DNA sequencing

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