| scholarly article | Q13442814 |
| P50 | author | Katherine A. Hoadley | Q79409590 |
| Charles M. Perou | Q30503513 | ||
| P2093 | author name string | Joel S Parker | |
| Dirk P Dittmer | |||
| Lisle E Mose | |||
| Sara R Selitsky | |||
| Daniel Hollern | |||
| David Marron | |||
| Corbin Jones | |||
| P2860 | cites work | The landscape of viral expression and host gene fusion and adaptation in human cancer | Q37250972 |
| Integrated genomic and molecular characterization of cervical cancer | Q37706407 | ||
| Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma | Q38722204 | ||
| Identification of candidate anti-cancer molecular mechanisms of Compound Kushen Injection using functional genomics. | Q38747762 | ||
| HeLa nucleic acid contamination in the cancer genome atlas leads to the misidentification of human papillomavirus 18. | Q38915517 | ||
| Simulation-based comprehensive benchmarking of RNA-seq aligners. | Q39110450 | ||
| Mycoplasma contamination in the 1000 Genomes Project | Q39646275 | ||
| BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters. | Q39741112 | ||
| Cell-type-specific responses to chemotherapeutics in breast cancer | Q40543849 | ||
| High levels of Epstein-Barr virus DNA in latently infected gastric adenocarcinoma | Q41983423 | ||
| Unique, dual-indexed sequencing adapters with UMIs effectively eliminate index cross-talk and significantly improve sensitivity of massively parallel sequencing | Q47176729 | ||
| Viral sequences in human cancer | Q50136365 | ||
| Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality | Q57010907 | ||
| Genomic Characterization of Six Virus-Associated Cancers Identifies Changes in the Tumor Immune Microenvironment and Altered Genetic Programs | Q59351932 | ||
| Computational correction of index switching in multiplexed sequencing libraries | Q88494705 | ||
| Contamination of clinical specimens with MLV-encoding nucleic acids: implications for XMRV and other candidate human retroviruses | Q24595424 | ||
| Human transcriptome subtraction by using short sequence tags to search for tumor viruses in conjunctival carcinoma | Q24671700 | ||
| Universal Reference RNA as a standard for microarray experiments | Q24805933 | ||
| Identification of a highly conserved sequence element at the 3' terminus of hepatitis C virus genome RNA | Q27480384 | ||
| Comprehensive genomic characterization of head and neck squamous cell carcinomas | Q28256121 | ||
| Comprehensive genomic characterization of squamous cell lung cancers | Q28274701 | ||
| Identification of replication competent murine gammaretroviruses in commonly used prostate cancer cell lines | Q28478630 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| Viral expression associated with gastrointestinal adenocarcinomas in TCGA high-throughput sequencing data | Q30702069 | ||
| Diverse and widespread contamination evident in the unmapped depths of high throughput sequencing data | Q30865295 | ||
| Distinguishing potential bacteria-tumor associations from contamination in a secondary data analysis of public cancer genome sequence data | Q31156466 | ||
| XMRV and Public Health: The Retroviral Genome Is Not a Suitable Template for Diagnostic PCR, and Its Association with Myalgic Encephalomyelitis/Chronic Fatigue Syndrome Appears Unreliable | Q33711512 | ||
| PathSeq: software to identify or discover microbes by deep sequencing of human tissue | Q33892322 | ||
| Meta-analysis of the impact of human papillomavirus (HPV) on cancer risk and overall survival in head and neck squamous cell carcinomas (HNSCC). | Q34011808 | ||
| High-throughput RNA sequencing-based virome analysis of 50 lymphoma cell lines from the Cancer Cell Line Encyclopedia project | Q34992696 | ||
| Prevalence and characterization of murine leukemia virus contamination in human cell lines | Q35618799 | ||
| Recombinant origin of the retrovirus XMRV. | Q35755248 | ||
| Evidence against a role for SV40 infection in human mesotheliomas and high risk of false-positive PCR results owing to presence of SV40 sequences in common laboratory plasmids | Q35903117 | ||
| Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions | Q36327416 | ||
| Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance | Q36496096 | ||
| P4510 | describes a project that uses | ggplot2 | Q326489 |
| P433 | issue | 1 | |
| P304 | page(s) | 79 | |
| P577 | publication date | 2020-01-28 | |
| P1433 | published in | BMC Genomics | Q15765854 |
| P1476 | title | Virus expression detection reveals RNA-sequencing contamination in TCGA | |
| P478 | volume | 21 |
| Q104105325 | Infection of human Nasal Epithelial Cells with SARS-CoV-2 and a 382-nt deletion isolate lacking ORF8 reveals similar viral kinetics and host transcriptional profiles | cites work | P2860 |
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