scholarly article | Q13442814 |
P50 | author | Sergei L. Kosakovsky Pond | Q55456380 |
Brittany Rife Magalis | Q42822435 | ||
P2093 | author name string | Marco Salemi | |
Jintanat Ananworanich | |||
Pasiri Sithinamsuwan | |||
Mark de Souza | |||
Patrick Autissier | |||
Kenneth C Williams | |||
Victor Valcour | |||
Samantha L Strickland | |||
James L K Fletcher | |||
Sukalaya Lerdlum | |||
Alexandra Schuetz | |||
Stephen D Shank | |||
Search007 Study Group | |||
Silvia RattoKim | |||
P2860 | cites work | Relaxed phylogenetics and dating with confidence | Q21146068 |
The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools | Q24248165 | ||
Bayesian phylogenetics with BEAUti and the BEAST 1.7 | Q24286945 | ||
Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment | Q24286949 | ||
HIV restriction in quiescent CD4⁺ T cells | Q26995784 | ||
Structure of HIV-1 gp120 with gp41-interactive region reveals layered envelope architecture and basis of conformational mobility | Q27658989 | ||
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing | Q27860512 | ||
BEAST: Bayesian evolutionary analysis by sampling trees | Q27860723 | ||
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA | Q27860908 | ||
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods | Q27860929 | ||
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees | Q27861060 | ||
IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies | Q28250973 | ||
Bayesian phylogeography finds its roots | Q28259572 | ||
Counting labeled transitions in continuous-time Markov models of evolution. | Q51905792 | ||
Monocytes harbour replication-competent, non-latent HIV-1 in patients on highly active antiretroviral therapy. | Q52021616 | ||
Quantitation of target molecules from polymerase chain reaction-based limiting dilution assays. | Q52262097 | ||
Characterization of Cellular Immune Responses in Thai Individuals with and without HIV-Associated Neurocognitive Disorders. | Q54218501 | ||
Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7 | Q57272965 | ||
The CD16+ Monocyte Subset Is More Permissive to Infection and Preferentially Harbors HIV-1 In Vivo | Q58003915 | ||
Relationship between intact HIV-1 proviruses in circulating CD4 T cells and rebound viruses emerging during treatment interruption | Q59351217 | ||
A model for alignment of Env V1 and V2 hypervariable domains from human and simian immunodeficiency viruses. | Q64985343 | ||
Continued evolution of HIV-1 circulating in blood monocytes with antiretroviral therapy: genetic analysis of HIV-1 in monocytes and CD4+ T cells of patients with discontinued therapy | Q79288104 | ||
Infectious Virus Persists in CD4+ T Cells and Macrophages in Antiretroviral Therapy-Suppressed Simian Immunodeficiency Virus-Infected Macaques | Q92225778 | ||
Myeloid and CD4 T Cells Comprise the Latent Reservoir in Antiretroviral Therapy-Suppressed SIVmac251-Infected Macaques | Q92734614 | ||
The effects of sampling strategy on the quality of reconstruction of viral population dynamics using Bayesian skyline family coalescent methods: A simulation study | Q37186685 | ||
Defective proviruses rapidly accumulate during acute HIV-1 infection | Q37239064 | ||
Minimal differentiation of classical monocytes as they survey steady-state tissues and transport antigen to lymph nodes | Q37286595 | ||
Eradication of HIV: current challenges and new directions | Q37317698 | ||
Characterization of restrictions to human immunodeficiency virus type 1 infection of monocytes | Q37730431 | ||
Monocyte mobilization, activation markers, and unique macrophage populations in the brain: observations from SIV infected monkeys are informative with regard to pathogenic mechanisms of HIV infection in humans | Q37968178 | ||
HIV-1 latency in monocytes/macrophages | Q38206643 | ||
Phylogenetics and Phyloanatomy of HIV/SIV Intra-Host Compartments and Reservoirs: The Key Role of the Central Nervous System | Q38618760 | ||
Exploring the temporal structure of heterochronous sequences using TempEst (formerly Path-O-Gen). | Q39256490 | ||
Monocyte differentiation and antigen-presenting functions | Q39258320 | ||
tipdatingbeast: an r package to assist the implementation of phylogenetic tip-dating tests using beast | Q39311471 | ||
Increased replication of non-syncytium-inducing HIV type 1 isolates in monocyte-derived macrophages is linked to advanced disease in infected children | Q39539214 | ||
Phenotypic studies on recombinant human immunodeficiency virus type 1 (HIV-1) containing CRF01_AE env gene derived from HIV-1-infected patient, residing in central Thailand | Q39544569 | ||
Blood monocytes harbor HIV type 1 strains with diversified phenotypes including macrophage-specific CCR5 virus | Q39609207 | ||
Evidence for human immunodeficiency virus type 1 replication in vivo in CD14(+) monocytes and its potential role as a source of virus in patients on highly active antiretroviral therapy | Q39685944 | ||
The effect of genetic structure on molecular dating and tests for temporal signal | Q39825674 | ||
Persistence of distinct HIV-1 populations in blood monocytes and naive and memory CD4 T cells during prolonged suppressive HAART. | Q40380996 | ||
Quantitation of Productively Infected Monocytes and Macrophages of Simian Immunodeficiency Virus-Infected Macaques | Q40734962 | ||
Fast, accurate and simulation-free stochastic mapping | Q43136863 | ||
Identification of Genetically Intact HIV-1 Proviruses in Specific CD4+ T Cells from Effectively Treated Participants. | Q46281767 | ||
HIV-1 infection of monocytes is directly related to the success of HAART. | Q48078114 | ||
DensiTree: making sense of sets of phylogenetic trees | Q48223302 | ||
Application of phylogenetic networks in evolutionary studies | Q28276801 | ||
Assignment of intrachain disulfide bonds and characterization of potential glycosylation sites of the type 1 recombinant human immunodeficiency virus envelope glycoprotein (gp120) expressed in Chinese hamster ovary cells | Q28288205 | ||
Not so different after all: a comparison of methods for detecting amino acid sites under selection | Q28306719 | ||
Bayesian coalescent inference of past population dynamics from molecular sequences | Q28306728 | ||
Molecular clock of HIV-1 envelope genes under early immune selection | Q28601925 | ||
Ancient hybridization and an Irish origin for the modern polar bear matriline | Q28606394 | ||
HyPhy: hypothesis testing using phylogenies | Q29013475 | ||
APE: Analyses of Phylogenetics and Evolution in R language | Q29546513 | ||
Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data | Q29547401 | ||
The Performance of the Date-Randomization Test in Phylogenetic Analyses of Time-Structured Virus Data | Q30909861 | ||
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis | Q33592278 | ||
Macrophages and HIV-1: An Unhealthy Constellation | Q33751356 | ||
Characterization of human immunodeficiency virus type 1 (HIV-1) envelope variation and neutralizing antibody responses during transmission of HIV-1 subtype B. | Q33780595 | ||
Host hindrance to HIV-1 replication in monocytes and macrophages | Q33846376 | ||
Molecular mechanisms of HIV-1 persistence in the monocyte-macrophage lineage | Q33864438 | ||
Detecting small amounts of gene flow from phylogenies of alleles | Q33955171 | ||
HIV evolutionary dynamics within and among hosts | Q34000621 | ||
Effects of metapopulation processes on measures of genetic diversity | Q34155346 | ||
Tissue myeloid cells in SIV-infected primates acquire viral DNA through phagocytosis of infected T cells | Q34561884 | ||
Macrophage infection via selective capture of HIV-1-infected CD4+ T cells | Q34742795 | ||
Successful isolation of infectious and high titer human monocyte-derived HIV-1 from two subjects with discontinued therapy | Q34761139 | ||
Impact of CCR5delta32 host genetic background and disease progression on HIV-1 intrahost evolutionary processes: efficient hypothesis testing through hierarchical phylogenetic models | Q34823713 | ||
HIV DNA reservoir increases risk for cognitive disorders in cART-naïve patients | Q34922069 | ||
Large number of rebounding/founder HIV variants emerge from multifocal infection in lymphatic tissues after treatment interruption | Q35190018 | ||
Significant genetic heterogeneity of the SIVmac251 viral swarm derived from different sources | Q35581953 | ||
Compartmentalization of human immunodeficiency virus type 1 between blood monocytes and CD4+ T cells during infection | Q35704022 | ||
New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation | Q35744008 | ||
Comparative study of methods for detecting sequence compartmentalization in human immunodeficiency virus type 1. | Q35857191 | ||
Immature monocytes acquire antigens from other cells in the bone marrow and present them to T cells after maturing in the periphery | Q36228368 | ||
Deciphering human immunodeficiency virus type 1 transmission and early envelope diversification by single-genome amplification and sequencing | Q36540055 | ||
Phylogenetically resolving epidemiologic linkage. | Q36684805 | ||
Macrophages sustain HIV replication in vivo independently of T cells | Q36737917 | ||
Persistent HIV-1 replication maintains the tissue reservoir during therapy | Q36897321 | ||
Graph hierarchies for phylogeography | Q36918037 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 1 | |
P304 | page(s) | veaa005 | |
P577 | publication date | 2020-01-01 | |
P1433 | published in | Virus Evolution | Q27726722 |
P1476 | title | Phyloanatomic characterization of the distinct T cell and monocyte contributions to the peripheral blood HIV population within the host | |
P478 | volume | 6 |
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