Kymolyzer, a Semi-Autonomous Kymography Tool to Analyze Intracellular Motility

scientific article published on 01 June 2020

Kymolyzer, a Semi-Autonomous Kymography Tool to Analyze Intracellular Motility is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1002/CPCB.107
P698PubMed publication ID32530579

P2093author name stringGulcin Pekkurnaz
Thomas L Schwarz
Himanish Basu
Michelle Cronin
Lai Ding
P2860cites workSuper-resolution fluorescence imaging of organelles in live cells with photoswitchable membrane probesQ36212813
Automated Multi-Peak Tracking Kymography (AMTraK): A Tool to Quantify Sub-Cellular Dynamics with Sub-Pixel AccuracyQ36228054
Myosin-driven transport network in plantsQ36252007
Visualization of melanosome dynamics within wild-type and dilute melanocytes suggests a paradigm for myosin V function In vivoQ36328552
Which way to go? Cytoskeletal organization and polarized transport in neuronsQ37785317
Slowing of axonal transport is a very early event in the toxicity of ALS-linked SOD1 mutants to motor neuronsQ41644415
Regulatory ATPase sites of cytoplasmic dynein affect processivity and force generationQ41912774
A novel form of motility in filopodia revealed by imaging myosin-X at the single-molecule levelQ41978648
Microtubule dynamics analysis using kymographs and variable-rate particle filtersQ44305882
Neuropathogenic forms of huntingtin and androgen receptor inhibit fast axonal transportQ44607270
KymoAnalyzer: a software tool for the quantitative analysis of intracellular transport in neurons.Q45972001
Direct visualization of the movement of the monomeric axonal transport motor UNC-104 along neuronal processes in living Caenorhabditis elegans.Q46171793
Disruption of axonal transport and neuronal viability by amyloid precursor protein mutations in Drosophila.Q46959740
How bacteria keep proteins movingQ47097062
Mitostasis in Neurons: Maintaining Mitochondria in an Extended Cellular ArchitectureQ47449361
Comparative analysis of axonal transport markers in primary mammalian neuronsQ48632000
Increased spatiotemporal resolution reveals highly dynamic dense tubular matrices in the peripheral ER.Q51358415
A novel algorithm to generate kymographs from dynamic axons for the quantitative analysis of axonal transport.Q51564002
The cytoplasmic dynein transport machinery and its many cargoes.Q52718934
Mutations in dynein link motor neuron degeneration to defects in retrograde transportQ55984322
KymoButler, a deep learning software for automated kymograph analysisQ83230564
Intracellular transport by active diffusionQ84449528
Myosin-Driven Intracellular TransportQ87929283
A High-Content Screen Identifies TPP1 and Aurora B as Regulators of Axonal Mitochondrial TransportQ90162881
Spatially Stable Mitochondrial Compartments Fuel Local Translation during PlasticityQ90908148
The light-sensitive dimerizer zapalog reveals distinct modes of immobilization for axonal mitochondriaQ91805824
Myosin IIA and formin dependent mechanosensitivity of filopodia adhesionQ92534304
Myosin Va transport of liposomes in three-dimensional actin networks is modulated by actin filament density, position, and polarityQ92986379
QuoVadoPro, an Autonomous Tool for Measuring Intracellular Dynamics using Temporal VarianceQ96617418
Glucose regulates mitochondrial motility via Milton modification by O-GlcNAc transferaseQ24300267
Defective axonal transport in a transgenic mouse model of amyotrophic lateral sclerosisQ24306886
The mechanism of Ca2+ -dependent regulation of kinesin-mediated mitochondrial motilityQ24315540
Axonal transport: cargo-specific mechanisms of motility and regulationQ26827748
The myosin superfamily at a glance.Q27011868
KymographClear and KymographDirect: two tools for the automated quantitative analysis of molecular and cellular dynamics using kymographsQ27305362
Peroxisomes move by hitchhiking on early endosomes using the novel linker protein PxdA.Q27308900
Peroxisomes, lipid droplets, and endoplasmic reticulum "hitchhike" on motile early endosomes.Q27309261
Cytoplasmic dynein is required for the spatial organization of protein aggregates in filamentous fungiQ27320799
Protein particles in Chlamydomonas flagella undergo a transport cycle consisting of four phasesQ27919603
Reconstitution of dynein transport to the microtubule plus end by kinesinQ27934548
Analysis of the kinesin superfamily: insights into structure and functionQ28266160
Mitochondrial trafficking in neuronsQ28291981
Kinesin assembly and movement in cellsQ28305630
Alzheimer's presenilin 1 mutations impair kinesin-based axonal transportQ28512320
Distinct mutants of retrograde intraflagellar transport (IFT) share similar morphological and molecular defectsQ28608953
Kinesin and dynein superfamily proteins and the mechanism of organelle transportQ29620418
Autophagosomes initiate distally and mature during transport toward the cell soma in primary neuronsQ30425491
Kinesin-1 and Dynein are the primary motors for fast transport of mitochondria in Drosophila motor axonsQ30477062
Simple and direct assembly of kymographs from movies using KYMOMAKER.Q30486406
Long-distance endosome trafficking drives fungal effector production during plant infectionQ30595083
Transport of fungal RAB11 secretory vesicles involves myosin-5, dynein/dynactin/p25, and kinesin-1 and is independent of kinesin-3Q30844734
Diffusion in crowded biological environments: applications of Brownian dynamicsQ31011555
Dynein is the motor for retrograde axonal transport of organellesQ33840224
Microtubule-based transport systems in neurons: the roles of kinesins and dyneinsQ33938556
Real-time measurements of actin filament polymerization by total internal reflection fluorescence microscopyQ34188990
Myosin Va and microtubule-based motors are required for fast axonal retrograde transport of tetanus toxin in motor neuronsQ34272092
Connecting the dots: the effects of macromolecular crowding on cell physiology.Q34454279
Altered axonal mitochondrial transport in the pathogenesis of Charcot-Marie-Tooth disease from mitofusin 2 mutationsQ34600251
Quantitative analysis of mitochondrial morphology and membrane potential in living cells using high-content imaging, machine learning, and morphological binningQ34899807
P433issue1
P304page(s)e107
P577publication date2020-06-01
P1433published inCurrent protocols in cell biologyQ27721530
P1476titleKymolyzer, a Semi-Autonomous Kymography Tool to Analyze Intracellular Motility
P478volume87

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Q96617418QuoVadoPro, an Autonomous Tool for Measuring Intracellular Dynamics using Temporal Variancecites workP2860

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