Characterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha

scientific article published on 06 August 2020

Characterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1038/S41598-020-69941-9
P698PubMed publication ID32764594

P50authorIkuko Hara-NishimuraQ63644015
P2093author name stringHiroshi Kudoh
Shuji Shigenobu
Atsushi J Nagano
Kiwako S Araki
Katsushi Yamaguchi
Ryohei Thomas Nakano
Tatsuya Kitazume
P2860cites workFast and accurate short read alignment with Burrows-Wheeler transformQ24653853
A new non-linear normalization method for reducing variability in DNA microarray experimentsQ24803818
Sequencing of transcriptomes from two Miscanthus species reveals functional specificity in rhizomes, and clarifies evolutionary relationshipsQ28658737
Growth of the plant cell wallQ29616250
A gene expression map of Arabidopsis thaliana developmentQ29617330
PYK10 myrosinase reveals a functional coordination between endoplasmic reticulum bodies and glucosinolates in Arabidopsis thaliana.Q30313880
Identification of rhizome-specific genes by genome-wide differential expression analysis in Oryza longistaminataQ30498137
Functional classification, genomic organization, putatively cis-acting regulatory elements, and relationship to quantitative trait loci, of sorghum genes with rhizome-enriched expressionQ30826779
Weeds of change: Cardamine hirsuta as a new model system for studying dissected leaf developmentQ33348007
Identification of genes related to the development of bamboo rhizome bud.Q33348295
Overexpression of Arabidopsis ECERIFERUM1 promotes wax very-long-chain alkane biosynthesis and influences plant response to biotic and abiotic stressesQ57246486
Priming for JA-dependent defenses using hexanoic acid is an effective mechanism to protect Arabidopsis against B. cinereaQ61287115
Phytochrome A and phytochrome B mediate the hypocotyl-specific downregulation of TUB1 by light in arabidopsisQ71287359
Comparative analysis of the Arabidopsis pollen transcriptomeQ73522003
Reactive oxygen species and root hairs in Arabidopsis root response to nitrogen, phosphorus and potassium deficiencyQ81832315
The overexpression of AtPrx37, an apoplastic peroxidase, reduces growth in ArabidopsisQ82277750
Evolutionary fate of rhizome-specific genes in a non-rhizomatous Sorghum genotypeQ82571190
Constitutive and inducible ER bodies of Arabidopsis thaliana accumulate distinct beta-glucosidasesQ83194520
Arabidopsis root-abundant cytosolic methionine sulfoxide reductase B genes MsrB7 and MsrB8 are involved in tolerance to oxidative stressQ84778058
Regulation of transcription in plants: mechanisms controlling developmental switchesQ33350086
Next-generation sequencing-based transcriptomic and proteomic analysis of the common reed, Phragmites australis (Poaceae), reveals genes involved in invasiveness and rhizome specificityQ33352945
Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genomeQ33364597
De novo Transcriptome Analysis of Miscanthus lutarioriparius Identifies Candidate Genes in Rhizome DevelopmentQ33365298
De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesisQ33563326
The ER body, a new organelle in Arabidopsis thaliana, requires NAI2 for its formation and accumulates specific beta-glucosidases.Q33576091
Long-distance dispersal and high genetic diversity are implicated in the invasive spread of the common reed, Phragmites australis (Poaceae), in northeastern North AmericaQ33945217
Structure and functions of the bacterial microbiota of plantsQ34035373
The weediness of wild plants: molecular analysis of genes influencing dispersal and persistence of johnsongrass, Sorghum halepense (L.) PersQ34095731
Agriculture. Increased food and ecosystem security via perennial grainsQ34122585
Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota.Q34363843
Using the Yeast Three-Hybrid System to Identify Proteins that Interact with a Phloem-Mobile mRNA.Q34411916
A detailed gene expression study of the Miscanthus genus reveals changes in the transcriptome associated with the rejuvenation of spring rhizomesQ35062733
A systems-wide comparison of red rice (Oryza longistaminata) tissues identifies rhizome specific genes and proteins that are targets for cultivated rice improvementQ35093202
A wound-inducible organelle derived from endoplasmic reticulum: a plant strategy against environmental stresses?Q35581438
Transcriptomic Analysis of the Regulation of Rhizome Formation in Temperate and Tropical Lotus (Nelumbo nucifera)Q35960531
Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shootsQ36517137
Differential Gene Expression between Leaf and Rhizome in Atractylodes lancea: A Comparative Transcriptome AnalysisQ36740411
Molecular characterization of the CER1 gene of arabidopsis involved in epicuticular wax biosynthesis and pollen fertilityQ36808864
ER bodies in plants of the Brassicales order: biogenesis and association with innate immunityQ37627497
The Arabidopsis Lipid Transfer Protein 2 (AtLTP2) Is Involved in Cuticle-Cell Wall Interface Integrity and in Etiolated Hypocotyl PermeabilityQ37667403
Unique defense strategy by the endoplasmic reticulum body in plants.Q37958849
Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stressQ39148226
Deep transcriptome sequencing of rhizome and aerial-shoot in Sorghum propinquumQ39337197
Digital Single-Cell Analysis of Plant Organ Development Using 3DCellAtlas.Q40274609
Characterization of organelles in the vacuolar-sorting pathway by visualization with GFP in tobacco BY-2 cellsQ40839390
Variation in plant-mediated interactions between rhizobacteria and caterpillars: potential role of soil composition.Q42001518
A proteinase-storing body that prepares for cell death or stresses in the epidermal cells of ArabidopsisQ43751031
The developmental dynamics of the maize leaf transcriptomeQ44994349
A developmental framework for dissected leaf formation in the Arabidopsis relative Cardamine hirsutaQ46150139
Activation of an ER-body-localized beta-glucosidase via a cytosolic binding partner in damaged tissues of Arabidopsis thalianaQ46513069
Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thalianaQ47234497
NAI1 gene encodes a basic-helix-loop-helix-type putative transcription factor that regulates the formation of an endoplasmic reticulum-derived structure, the ER bodyQ47447158
Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling.Q50804328
Ecology goes underground.Q51203750
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root.Q51553227
Cell- and tissue-specific localization and regulation of the epithiospecifier protein in Arabidopsis thaliana.Q51711266
NAI2 is an endoplasmic reticulum body component that enables ER body formation in Arabidopsis thaliana.Q54516633
Prospects for Developing Perennial Grain CropsQ55921289
Polyploidy, hybridization and reticulate evolution: lessons from the BrassicaceaeQ57206638
P433issue1
P921main subjectCardamine leucanthaQ6747475
P304page(s)13291
P577publication date2020-08-06
P1433published inScientific ReportsQ2261792
P1476titleCharacterization of rhizome transcriptome and identification of a rhizomatous ER body in the clonal plant Cardamine leucantha
P478volume10