| P50 | author | Karen M Arndt | Q87982513 |
| | Mitchell A Ellison | Q88020864 |
| | A Elizabeth Hildreth | Q89719297 |
| | Alex M Francette | Q98729619 |
| P2093 | author name string | Julia M Seraly | |
| | Lauren M Lotka | |
| P2860 | cites work | Crystal structure of the nucleosome core particle at 2.8 A resolution | Q22122355 |
| | Transcriptome sequencing to detect gene fusions in cancer | Q24653386 |
| | Molecular dynamics of histone H1 | Q26784617 |
| | The Nrd1–Nab3–Sen1 termination complex interacts with the Ser5-phosphorylated RNA polymerase II C-terminal domain | Q27651366 |
| | Molecular Basis for Coordinating Transcription Termination with Noncoding RNA Degradation | Q27684832 |
| | The Sequence Alignment/Map format and SAMtools | Q27860966 |
| | Set2 methylation of histone H3 lysine 36 suppresses histone exchange on transcribed genes | Q27929868 |
| | A bacterial-like mechanism for transcription termination by the Sen1p helicase in budding yeast | Q27930332 |
| | Effects of the Paf1 complex and histone modifications on snoRNA 3'-end formation reveal broad and locus-specific regulation | Q27931099 |
| | Transcription elongation factors repress transcription initiation from cryptic sites. | Q27931897 |
| | Awk — a pattern scanning and processing language | Q56135120 |
| | Transcript Buffering: A Balancing Act between mRNA Synthesis and mRNA Degradation | Q57029673 |
| | Structural basis of the nucleosome transition during RNA polymerase II passage | Q57032078 |
| | Structure of transcribing RNA polymerase II-nucleosome complex | Q60300334 |
| | Isolation of genes by complementation in yeast | Q69807914 |
| | SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat | Q70234995 |
| | Mechanism of protein access to specific DNA sequences in chromatin: a dynamic equilibrium model for gene regulation | Q71566510 |
| | Nucleosomes can form a polar barrier to transcript elongation by RNA polymerase II | Q79326024 |
| | Multisite Substrate Recognition in Asf1-Dependent Acetylation of Histone H3 K56 by Rtt109 | Q90596842 |
| | Contrasting roles of the RSC and ISW1/CHD1 chromatin remodelers in RNA polymerase II elongation and termination | Q91228856 |
| | The Paf1 Complex Broadly Impacts the Transcriptome of Saccharomyces cerevisiae | Q92049400 |
| | Nucleosome and ubiquitin position Set2 to methylate H3K36 | Q92797104 |
| | Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription | Q27932406 |
| | Roadblock termination by reb1p restricts cryptic and readthrough transcription. | Q27934946 |
| | Eaf3 chromodomain interaction with methylated H3-K36 links histone deacetylation to Pol II elongation | Q27935250 |
| | Cotranscriptional set2 methylation of histone H3 lysine 36 recruits a repressive Rpd3 complex | Q27935315 |
| | A role for chromatin remodeling in transcriptional termination by RNA polymerase II. | Q27938776 |
| | Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C | Q28131625 |
| | Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration | Q28264933 |
| | deepTools2: a next generation web server for deep-sequencing data analysis | Q28597770 |
| | Influenza virus NS1 protein interacts with the cellular 30 kDa subunit of CPSF and inhibits 3'end formation of cellular pre-mRNAs | Q28609836 |
| | Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome | Q28756588 |
| | BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 |
| | Bidirectional promoters generate pervasive transcription in yeast | Q29614766 |
| | Rapid and reliable protein extraction from yeast | Q29617781 |
| | In vitro mutagenesis and plasmid shuffling: from cloned gene to mutant yeast | Q29618550 |
| | Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae | Q29620841 |
| | A high-resolution map of transcription in the yeast genome | Q30014822 |
| | BEDTools: The Swiss-Army Tool for Genome Feature Analysis. | Q30370926 |
| | An evolutionarily 'young' lysine residue in histone H3 attenuates transcriptional output in Saccharomyces cerevisiae | Q30429288 |
| | Histone H3 Thr 45 phosphorylation is a replication-associated post-translational modification in S. cerevisiae | Q30436419 |
| | Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast | Q30498341 |
| | A comprehensive library of histone mutants identifies nucleosomal residues required for H3K4 methylation | Q33351290 |
| | A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription. | Q33799865 |
| | Recurrent read-through fusion transcripts in breast cancer | Q33858203 |
| | deepTools: a flexible platform for exploring deep-sequencing data. | Q33860863 |
| | Identification of histone mutants that are defective for transcription-coupled nucleosome occupancy | Q33951438 |
| | Global analysis of core histones reveals nucleosomal surfaces required for chromosome bi-orientation. | Q33965829 |
| | HISAT: a fast spliced aligner with low memory requirements | Q34043398 |
| | BigWig and BigBed: enabling browsing of large distributed datasets | Q34070727 |
| | Nucleosome surface containing nucleosomal DNA entry/exit site regulates H3-K36me3 via association with RNA polymerase II and Set2. | Q34115619 |
| | Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution | Q34239260 |
| | Identification of cis elements directing termination of yeast nonpolyadenylated snoRNA transcripts | Q34330195 |
| | Nucleosomes facilitate their own invasion | Q34333992 |
| | Rapid spontaneous accessibility of nucleosomal DNA. | Q34373646 |
| | Transcriptome surveillance by selective termination of noncoding RNA synthesis. | Q34383897 |
| | featureCounts: an efficient general purpose program for assigning sequence reads to genomic features | Q34384848 |
| | Poly(A) signals control both transcriptional termination and initiation between the tandem GAL10 and GAL7 genes of Saccharomyces cerevisiae | Q42651921 |
| | DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing | Q43123146 |
| | Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II. | Q44658575 |
| | The Ground State and Evolution of Promoter Region Directionality | Q46321733 |
| | Preparation of yeast RNA. | Q46761146 |
| | Emerging Insights into the Roles of the Paf1 Complex in Gene Regulation | Q47859224 |
| | High-resolution transcription maps reveal the widespread impact of roadblock termination in yeast. | Q48205304 |
| | Quantitative ChIP-Seq normalization reveals global modulation of the epigenome. | Q51504155 |
| | XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. | Q51547969 |
| | Structural basis for ATP-dependent chromatin remodelling by the INO80 complex. | Q52324400 |
| | Structure and regulation of the human INO80-nucleosome complex. | Q52324408 |
| | Manipulation of cloned yeast DNA. | Q52585086 |
| | A posttranscriptional role for the yeast Paf1-RNA polymerase II complex is revealed by identification of primary targets. | Q53652090 |
| | Mechanistic interpretation of promoter-proximal peaks and RNAPII density maps. | Q54414311 |
| | Genome-wide mapping of nucleosome positions in yeast using high-resolution MNase ChIP-Seq | Q34396868 |
| | Comprehensive polyadenylation site maps in yeast and human reveal pervasive alternative polyadenylation | Q34498318 |
| | The Snf1 protein kinase and Sit4 protein phosphatase have opposing functions in regulating TATA-binding protein association with the Saccharomyces cerevisiae INO1 promoter | Q34572737 |
| | The unfolded protein response coordinates the production of endoplasmic reticulum protein and endoplasmic reticulum membrane | Q34673029 |
| | An effect of DNA sequence on nucleosome occupancy and removal | Q34768303 |
| | Phosphorylation of histone H3 Thr-45 is linked to apoptosis | Q34975324 |
| | Kinetochore function and chromosome segregation rely on critical residues in histones H3 and H4 in budding yeast | Q34987501 |
| | Recurrent chimeric RNAs enriched in human prostate cancer identified by deep sequencing | Q35022099 |
| | Identification of a role for histone H2B ubiquitylation in noncoding RNA 3'-end formation through mutational analysis of Rtf1 in Saccharomyces cerevisiae | Q35065497 |
| | Suppression of pervasive noncoding transcription in embryonic stem cells by esBAF. | Q35104148 |
| | Interaction of yeast RNA-binding proteins Nrd1 and Nab3 with RNA polymerase II terminator elements | Q35641224 |
| | AKT phosphorylates H3-threonine 45 to facilitate termination of gene transcription in response to DNA damage. | Q35786083 |
| | Histone tails and the H3 alphaN helix regulate nucleosome mobility and stability | Q35857015 |
| | PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation | Q35893857 |
| | Widespread Inducible Transcription Downstream of Human Genes | Q35931430 |
| | Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry | Q36030212 |
| | In vivo SELEX reveals novel sequence and structural determinants of Nrd1-Nab3-Sen1-dependent transcription termination | Q36296252 |
| | The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states | Q36522035 |
| | Common genomic elements promote transcriptional and DNA replication roadblocks | Q37313708 |
| | Termination of Transcription of Short Noncoding RNAs by RNA Polymerase II. | Q37407640 |
| | Modulation of mRNA and lncRNA expression dynamics by the Set2-Rpd3S pathway | Q37465086 |
| | Selective suppression of antisense transcription by Set2-mediated H3K36 methylation | Q37465099 |
| | Histone chaperone networks shaping chromatin function | Q37656813 |
| | Pervasive transcription read-through promotes aberrant expression of oncogenes and RNA chimeras in renal carcinoma | Q38273214 |
| | H3K4 trimethylation by Set1 promotes efficient termination by the Nrd1-Nab3-Sen1 pathway | Q38284764 |
| | Amino acid substitutions in the structured domains of histones H3 and H4 partially relieve the requirement of the yeast SWI/SNF complex for transcription | Q38289206 |
| | DYRK1A phoshorylates histone H3 to differentially regulate the binding of HP1 isoforms and antagonize HP1-mediated transcriptional repression | Q38307139 |
| | Transcription termination and the control of the transcriptome: why, where and how to stop | Q38343842 |
| | Lateral Thinking: How Histone Modifications Regulate Gene Expression | Q38679432 |
| | Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner. | Q38808036 |
| | Effects of Transcription Elongation Rate and Xrn2 Exonuclease Activity on RNA Polymerase II Termination Suggest Widespread Kinetic Competition. | Q38827412 |
| | Mechanisms of action and regulation of ATP-dependent chromatin-remodelling complexes | Q39312199 |
| | Transcriptome-wide RNA processing kinetics revealed using extremely short 4tU labeling. | Q40199664 |
| | Widespread disruption of host transcription termination in HSV-1 infection. | Q40967543 |
| | Comparative analysis of linker histone H1, MeCP2, and HMGD1 on nucleosome stability and target site accessibility | Q41083933 |
| | A map of nucleosome positions in yeast at base-pair resolution | Q41968064 |
| | Kinetic competition between RNA Polymerase II and Sen1-dependent transcription termination | Q42276193 |
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| | RStudio | Q4798119 |
| P577 | publication date | 2020-08-26 | |
| P1433 | published in | eLife | Q2000008 |
| P1476 | title | The nucleosome DNA entry-exit site is important for transcription termination and prevention of pervasive transcription | |
| P478 | volume | 9 | |