Extensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages

scientific article published on 27 August 2020

Extensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages is …
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scholarly articleQ13442814

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P356DOI10.3389/FPUBH.2020.00455
P932PMC publication ID7481465
P698PubMed publication ID32974265

P50authorVitali SintchenkoQ61083122
Peter JelfsQ114358274
Qinning WangQ114358326
P2093author name stringGrant A Hill-Cawthorne
Ben J Marais
Nadine McCallum
Alexander C Outhred
Ulziijargal Gurjav
P2860cites workProposal for standardization of optimized mycobacterial interspersed repetitive unit-variable-number tandem repeat typing of Mycobacterium tuberculosisQ24672664
Impact of homoplasy on variable numbers of tandem repeats and spoligotypes in Mycobacterium tuberculosis.Q51556968
Epidemiological links between tuberculosis cases identified twice as efficiently by whole genome sequencing than conventional molecular typing: A population-based study.Q52332313
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Variable human minisatellite-like regions in the Mycobacterium tuberculosis genomeQ56834474
A Quantitative Evaluation of MIRU-VNTR Typing Against Whole-Genome Sequencing for Identifying Mycobacterium tuberculosis Transmission: A Prospective Observational Cohort StudyQ58805098
Evolution of short sequence repeats in Mycobacterium tuberculosisQ82654548
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Identifying Likely Transmission Pathways within a 10-Year Community Outbreak of Tuberculosis by High-Depth Whole Genome SequencingQ28550507
MIRU-VNTR Genotyping of Mycobacterium tuberculosis Strains Using QIAxcel Technology: A Multicentre Evaluation StudyQ28550511
Two new rapid SNP-typing methods for classifying mycobacterium tuberculosis complex into the main phylogenetic lineagesQ28728992
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Genotyping of genetically monomorphic bacteria: DNA sequencing in Mycobacterium tuberculosis highlights the limitations of current methodologies.Q30885956
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Genomic analysis of globally diverse Mycobacterium tuberculosis strains provides insights into the emergence and spread of multidrug resistanceQ33595994
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Automated high-throughput genotyping for study of global epidemiology of Mycobacterium tuberculosis based on mycobacterial interspersed repetitive unitsQ33973632
Discriminatory power and reproducibility of novel DNA typing methods for Mycobacterium tuberculosis complex strainsQ34143606
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Evolutionary history and global spread of the Mycobacterium tuberculosis Beijing lineageQ35544538
Combination of single nucleotide polymorphism and variable-number tandem repeats for genotyping a homogenous population of Mycobacterium tuberculosis Beijing strains in ChinaQ35806873
Whole Genome Sequencing Demonstrates Limited Transmission within Identified Mycobacterium tuberculosis Clusters in New South Wales, AustraliaQ36162949
Standard Genotyping Overestimates Transmission of Mycobacterium tuberculosis among Immigrants in a Low-Incidence CountryQ37040514
Mycobacterium tuberculosis mutation rate estimates from different lineages predict substantial differences in the emergence of drug-resistant tuberculosisQ37184072
Proposal of a consensus set of hypervariable mycobacterial interspersed repetitive-unit-variable-number tandem-repeat loci for subtyping of Mycobacterium tuberculosis Beijing isolatesQ37546578
Mycobacterium tuberculosis lineage 4 comprises globally distributed and geographically restricted sublineagesQ37588147
NATURAL SELECTION AND RANDOM GENETIC DRIFT IN PHENOTYPIC EVOLUTION.Q38400597
BFC: correcting Illumina sequencing errorsQ40962354
Evaluation of mycobacterial interspersed repetitive-unit-variable-number tandem-repeat genotyping as performed in laboratories in Canada, France, and the United StatesQ43165697
Evolutionary robust SNPs reveal the misclassification of Mycobacterium tuberculosis Beijing family strains into sublineagesQ44770312
STABILIZING SELECTION AND THE COMPARATIVE ANALYSIS OF ADAPTATION.Q47779727
Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosisQ48190673
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P921main subjectMycobacterium tuberculosisQ130971
convergent evolutionQ200312
P304page(s)455
P577publication date2020-08-27
P1433published inFrontiers in Public HealthQ27725050
P1476titleExtensive Homoplasy but No Evidence of Convergent Evolution of Repeat Numbers at MIRU Loci in Modern Mycobacterium tuberculosis Lineages
P478volume8

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