| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/S42003-020-01377-3 |
| P698 | PubMed publication ID | 33168940 |
| P50 | author | Matthew Berriman | Q28025032 |
| John Gilleard | Q70829473 | ||
| Alan Tracey | Q91654104 | ||
| Jennifer D Noonan | Q101476369 | ||
| Janneke Wit | Q101476371 | ||
| Roz Laing | Q61100882 | ||
| Eileen Devaney | Q38304964 | ||
| Stephen R. Doyle | Q42723896 | ||
| Faye H Rodgers | Q56383855 | ||
| P2093 | author name string | James A Cotton | |
| Michael A Quail | |||
| Muhammad Zubair Shabbir | |||
| Elizabeth Redman | |||
| Neil Sargison | |||
| Collette Britton | |||
| Helen Beasley | |||
| Nancy Holroyd | |||
| Michael Paulini | |||
| Guillaume Sallé | |||
| Kirsty Maitland | |||
| Axel Martinelli | |||
| Robin Beech | |||
| Umer Chaudhry | |||
| Kevin L Howe | |||
| Karen Brooks | |||
| Geetha Sankaranarayanan | |||
| David Bartley | |||
| Wojtek Bazant | |||
| P2860 | cites work | Automated generation of heuristics for biological sequence comparison | Q21061202 |
| The genome and transcriptome of Haemonchus contortus, a key model parasite for drug and vaccine discovery | Q21183984 | ||
| REAPR: a universal tool for genome assembly evaluation | Q21999526 | ||
| The genome and transcriptome of the zoonotic hookworm Ancylostoma ceylanicum identify infection-specific gene families | Q22122063 | ||
| Genome of the human hookworm Necator americanus | Q22122067 | ||
| The genomes of four tapeworm species reveal adaptations to parasitism | Q22122155 | ||
| Gap5--editing the billion fragment sequence assembly | Q24625138 | ||
| Versatile and open software for comparing large genomes | Q24807126 | ||
| Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments | Q27486121 | ||
| WebLogo: A Sequence Logo Generator | Q27860646 | ||
| The Sequence Alignment/Map format and SAMtools | Q27860966 | ||
| Operon and non-operon gene clusters in the C. elegans genome | Q28087129 | ||
| Apollo: Democratizing genome annotation | Q64256249 | ||
| Presence of the Caenorhabditis elegans spliced leader on different mRNAs and in different genera of nematodes | Q67990132 | ||
| Minimap2: pairwise alignment for nucleotide sequences | Q88639235 | ||
| The genome of tapeworm Taenia multiceps sheds light on understanding parasitic mechanism and control of coenurosis disease | Q89280556 | ||
| The confounding effects of high genetic diversity on the determination and interpretation of differential gene expression analysis in the parasitic nematode Haemonchus contortus | Q90124466 | ||
| Emodepside has sex-dependent immobilizing effects on adult Brugia malayi due to a differentially spliced binding pocket in the RCK1 region of the SLO-1 K channel | Q90280506 | ||
| The global diversity of Haemonchus contortus is shaped by human intervention and climate | Q90883991 | ||
| OrthoFinder: phylogenetic orthology inference for comparative genomics | Q91284184 | ||
| Genome-wide Approaches to Investigate Anthelmintic Resistance | Q91408191 | ||
| The Genome Sequence of the Anthelmintic-Susceptible New Zealand Haemonchus contortus | Q91536278 | ||
| g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) | Q91845056 | ||
| Recompleting the Caenorhabditis elegans genome | Q92254348 | ||
| Compendium of 4,941 rumen metagenome-assembled genomes for rumen microbiome biology and enzyme discovery | Q92377980 | ||
| Extreme-QTL mapping of monepantel resistance in Haemonchus contortus | Q92621901 | ||
| Ribbon: Intuitive visualization for complex genomic variation | Q98241903 | ||
| De novo assembly of haplotype-resolved genomes with trio binning | Q57804732 | ||
| Chromosome-scale assemblies of plant genomes using nanopore long reads and optical maps | Q58570131 | ||
| Comparative genomics of the major parasitic worms | Q58611501 | ||
| Cytological Polymorphism in the Nematode Haemonchus contortus (Rudolphi 1803) Cobb 1898 | Q58942895 | ||
| Chromosome-level assembly of the water buffalo genome surpasses human and goat genomes in sequence contiguity | Q60907762 | ||
| A High-Quality Genome Assembly from a Single Mosquito Using PacBio Sequencing | Q61813353 | ||
| Ultra-deep, long-read nanopore sequencing of mock microbial community standards | Q64054493 | ||
| Population genomic and evolutionary modelling analyses reveal a single major QTL for ivermectin drug resistance in the pathogenic nematode, Haemonchus contortus | Q64085705 | ||
| IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies | Q28250973 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Haemonchus contortus acetylcholine receptors of the DEG-3 subfamily and their role in sensitivity to monepantel | Q28475244 | ||
| Annotation of two large contiguous regions from the Haemonchus contortus genome using RNA-seq and comparative analysis with Caenorhabditis elegans | Q28476559 | ||
| Poppr: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction | Q28649990 | ||
| Sex-biased gene expression and evolution of the x chromosome in nematodes | Q28655757 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes | Q29547486 | ||
| The variant call format and VCFtools | Q29614172 | ||
| STAR: ultrafast universal RNA-seq aligner | Q29615052 | ||
| Scaffolding pre-assembled contigs using SSPACE | Q29616857 | ||
| Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies | Q29617550 | ||
| Haemonchus contortus: Genome Structure, Organization and Comparative Genomics. | Q30388669 | ||
| LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons | Q33314625 | ||
| Recombinational landscape and population genomics of Caenorhabditis elegans | Q33417666 | ||
| Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation | Q33578293 | ||
| Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation | Q33622593 | ||
| The genome and developmental transcriptome of the strongylid nematode Haemonchus contortus | Q33741666 | ||
| Phased diploid genome assembly with single-molecule real-time sequencing. | Q33887832 | ||
| DREME: motif discovery in transcription factor ChIP-seq data | Q33890212 | ||
| HISAT: a fast spliced aligner with low memory requirements | Q34043398 | ||
| A deep sequencing approach to comparatively analyze the transcriptome of lifecycle stages of the filarial worm, Brugia malayi | Q34105247 | ||
| Integration of mapped RNA-Seq reads into automatic training of eukaryotic gene finding algorithm | Q34115338 | ||
| Schistosoma mansoni: chemotherapy of infections of different ages | Q34165519 | ||
| Dampening of expression oscillations by synchronous regulation of a microRNA and its target | Q34371199 | ||
| BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs | Q34480034 | ||
| Near-optimal probabilistic RNA-seq quantification | Q34520743 | ||
| MultiQC: summarize analysis results for multiple tools and samples in a single report. | Q34531133 | ||
| A global analysis of C. elegans trans-splicing | Q34548280 | ||
| FIMO: scanning for occurrences of a given motif | Q34729603 | ||
| A new class of anthelmintics effective against drug-resistant nematodes | Q34761361 | ||
| Smart-seq2 for sensitive full-length transcriptome profiling in single cells. | Q34993864 | ||
| GenomeTools: a comprehensive software library for efficient processing of structured genome annotations | Q35007572 | ||
| circlize Implements and enhances circular visualization in R. | Q35188401 | ||
| The nature and prospects for gut membrane proteins as vaccine candidates for Haemonchus contortus and other ruminant trichostrongyloids | Q35295051 | ||
| Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement | Q35436695 | ||
| The genomic basis of parasitism in the Strongyloides clade of nematodes | Q35909943 | ||
| LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads. | Q35913741 | ||
| Direct determination of diploid genome sequences | Q36337332 | ||
| Genetics of mating and sex determination in the parasitic nematode Haemonchus contortus | Q37011314 | ||
| Detecting heterozygosity in shotgun genome assemblies: Lessons from obligately outcrossing nematodes | Q37142020 | ||
| Effect of single-dose ivermectin on Onchocerca volvulus: a systematic review and meta-analysis | Q37159863 | ||
| TRA-1 ChIP-seq reveals regulators of sexual differentiation and multilevel feedback in nematode sex determination | Q37218490 | ||
| The genome of Onchocerca volvulus, agent of river blindness | Q37643713 | ||
| Haemonchus contortus as a paradigm and model to study anthelmintic drug resistance | Q38133637 | ||
| WormBase ParaSite - a comprehensive resource for helminth genomics | Q38375438 | ||
| Vaccination of sheep and cattle against haemonchosis. | Q38428738 | ||
| Differential analysis of RNA-seq incorporating quantification uncertainty | Q38743889 | ||
| ModelFinder: fast model selection for accurate phylogenetic estimates | Q38798531 | ||
| Genetic Diversity and Population Structure of Haemonchus contortus | Q38847620 | ||
| Low cost whole-organism screening of compounds for anthelmintic activity. | Q39368368 | ||
| BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS. | Q40331996 | ||
| Bandage: interactive visualization of de novo genome assemblies | Q40811568 | ||
| Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps | Q41018539 | ||
| Genetic evidence for hybridisation between Haemonchus contortus and Haemonchus placei in natural field populations and its implications for interspecies transmission of anthelmintic resistance | Q41634431 | ||
| Identification and analysis of internal promoters in Caenorhabditis elegans operons | Q41735826 | ||
| Unlocking holocentric chromosomes: new perspectives from comparative and functional genomics? | Q42244934 | ||
| ARCS: scaffolding genome drafts with linked reads. | Q42695559 | ||
| cDNA-AFLP analysis in levamisole-resistant Haemonchus contortus reveals alternative splicing in a nicotinic acetylcholine receptor subunit | Q43236974 | ||
| A method for single pair mating in an obligate parasitic nematode | Q46267011 | ||
| Global patterns reveal strong population structure in Haemonchus contortus, a nematode parasite of domesticated ruminants | Q46643286 | ||
| Caenorhabditis elegans DAZ-1 is expressed in proliferating germ cells and directs proper nuclear organization and cytoplasmic core formation during oogenesis | Q47069064 | ||
| A genome resequencing-based genetic map reveals the recombination landscape of an outbred parasitic nematode in the presence of polyploidy and polyandry. | Q47266449 | ||
| Annotation-free quantification of RNA splicing using LeafCutter | Q47327079 | ||
| Genome-wide germline-enriched and sex-biased expression profiles in Caenorhabditis elegans | Q47327774 | ||
| Haemonchus contortus SL2 trans-spliced RNA leader sequence. | Q48343828 | ||
| Nanopore sequencing and assembly of a human genome with ultra-long reads. | Q50066036 | ||
| Parallelization of MAFFT for large-scale multiple sequence alignments. | Q51557070 | ||
| Genome Annotation Generator: a simple tool for generating and correcting WGS annotation tables for NCBI submission. | Q52326284 | ||
| Genetic Diversity on the Sex Chromosomes. | Q53279245 | ||
| Cutadapt removes adapter sequences from high-throughput sequencing reads | Q55953584 | ||
| Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data | Q57785575 | ||
| P433 | issue | 1 | |
| P921 | main subject | Haemonchus contortus | Q1754336 |
| P304 | page(s) | 656 | |
| P577 | publication date | 2020-11-09 | |
| P1433 | published in | Communications Biology | Q60029756 |
| P1476 | title | Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm | |
| P478 | volume | 3 |
Search more.