| scholarly article | Q13442814 |
| P50 | author | Bob Waterston | Q1111128 |
| Nikolaus Rajewsky | Q1991647 | ||
| Eran Segal | Q5384865 | ||
| Mark Bender Gerstein | Q6766711 | ||
| Suzanna Lewis | Q7650732 | ||
| Jim Kent | Q6196102 | ||
| Ladeana Hillier | Q6469365 | ||
| Lincoln Stein | Q6551037 | ||
| Eric C Lai | Q52431492 | ||
| Paul Lloyd | Q55155131 | ||
| Reto Gassmann | Q55155132 | ||
| Roger P Alexander | Q56514997 | ||
| Andreas Rechtsteiner | Q56515002 | ||
| Valerie Reinke | Q57338308 | ||
| Koon-Kiu Yan | Q57413296 | ||
| Hiram Clawson | Q62673866 | ||
| Yaniv Lubling | Q63386606 | ||
| Rachel Lyne | Q63434919 | ||
| Sebastian D Mackowiak | Q63434934 | ||
| Vishal Khivansara | Q63953167 | ||
| Susan Strome | Q65088229 | ||
| David M. Miller III | Q77516124 | ||
| Lucas Lochovsky | Q82994902 | ||
| Michael J MacCoss | Q87441179 | ||
| Ekta Khurana | Q88419114 | ||
| Jiang He | Q89556699 | ||
| Jason D Lieb | Q109084133 | ||
| Ellen T. Kephart | Q112256031 | ||
| Elise A Feingold | Q114294288 | ||
| Jorja G Henikoff | Q125087503 | ||
| Rajkumar Sasidharan | Q125268585 | ||
| Judith Janette | Q125268587 | ||
| Masaomi Kato | Q125268686 | ||
| Dionne Vafeados | Q125268770 | ||
| Brent Ewing | Q125268786 | ||
| Julie Ahringer | Q15709495 | ||
| Steven Henikoff | Q28033746 | ||
| Michael P. Snyder | Q28924918 | ||
| Tao Liu | Q30347456 | ||
| Gos Micklem | Q30347699 | ||
| Angie S. Hinrichs | Q30503184 | ||
| Marco Mangone | Q43105180 | ||
| Abby Dernburg | Q43167372 | ||
| Sheldon McKay | Q48039068 | ||
| Joel Rozowsky | Q37390171 | ||
| Kim Rutherford | Q37391636 | ||
| Frank J. Slack | Q37392148 | ||
| Galt Barber | Q38159064 | ||
| Gunnar Rätsch | Q41047394 | ||
| Paulina Kolasinska-Zwierz | Q42458264 | ||
| Georg Zeller | Q42588750 | ||
| Andrea Sboner | Q42869291 | ||
| Isabel Latorre | Q35703615 | ||
| P2093 | author name string | Jennifer Brennan | |
| Nicole L Washington | |||
| Chao Cheng | |||
| X Shirley Liu | |||
| Arshad Desai | |||
| Richard Smith | |||
| Stuart K Kim | |||
| Fabio Piano | |||
| Ashish Agarwal | |||
| John I Murray | |||
| Mei Zhong | |||
| Mihail Sarov | |||
| Wei Niu | |||
| Zhi John Lu | |||
| Heidi Rosenbaum | |||
| John K Kim | |||
| Ghia Euskirchen | |||
| Adrian Carr | |||
| Phil Green | |||
| Sergio Contrino | |||
| Ting Han | |||
| Beijing Wu | |||
| Andréa C Dosé | |||
| Kristin C Gunsalus | |||
| Kahn Rhrissorrakrai | |||
| Xin Feng | |||
| Eric L Van Nostrand | |||
| Christina M Whittle | |||
| Sevinc Ercan | |||
| Gennifer Merrihew | |||
| Peter J Good | |||
| Raymond K Auerbach | |||
| Ming-Sin Cheung | |||
| Jing Leng | |||
| Stefan R Henz | |||
| Kevin Y Yip | |||
| Hoang Pham | |||
| Rebecca F Lowdon | |||
| Lukas Habegger | |||
| Guilin Wang | |||
| Pedro Alves | |||
| Marc Perry | |||
| Cindie Slightam | |||
| Chong Shou | |||
| Morten Jensen | |||
| Andrew Muroyama | |||
| Cathleen M Brdlik | |||
| Anne Vielle | |||
| Xingliang Zhou | |||
| Tony Hyman | |||
| Teruaki Takasaki | |||
| Rebecca Robilotto | |||
| Mark S Guyer | |||
| Peter Ruzanov | |||
| Luke O Dannenberg | |||
| Hyunjin Shin | |||
| E O Stinson | |||
| Desirea Mecenas | |||
| Kohta Ikegami | |||
| Amber Leahey | |||
| Zheng Zha | |||
| Bradley I Arshinoff | |||
| Paul Scheid | |||
| Heather Holster | |||
| William C Spencer | |||
| Siew-Loon Ooi | |||
| Mitzi Morris | |||
| Thea Egelhofer | |||
| Scott Taing | |||
| Michelle Gutwein | |||
| A Leo Iniguez | |||
| Aurelien Chateigner | |||
| Elicia A Preston | |||
| Francois Gullier | |||
| Jeremy Jean Brouillet | |||
| Ksenia Voronina | |||
| Lindsay Dick | |||
| Taryn Phippen | |||
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| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
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| P577 | publication date | 2010-12-24 | |
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| Q38401337 | Dynamic changes of histone H3 marks during Caenorhabditis elegans lifecycle revealed by middle-down proteomics |
| Q39062198 | Dynamic trans-acting factor colocalization in human cells |
| Q37343806 | E2F coregulates an essential HSF developmental program that is distinct from the heat-shock response |
| Q36263760 | Effect of mutation mechanisms on variant composition and distribution in Caenorhabditis elegans |
| Q55283557 | Effect of the diet type and temperature on the C. elegans transcriptome. |
| Q57173895 | Effects of liquid cultivation on gene expression and phenotype of C. elegans |
| Q90437354 | Electron microscopy snapshots of single particles from single cells |
| Q36485473 | Embryonic priming of a miRNA locus predetermines postmitotic neuronal left/right asymmetry in C. elegans |
| Q34505555 | Embryonic transcription is controlled by maternally defined chromatin state. |
| Q34758207 | Endogenous nuclear RNAi mediates behavioral adaptation to odor. |
| Q30569839 | Engineering the Caenorhabditis elegans genome using Cas9-triggered homologous recombination |
| Q37485666 | Enhancer Sharing Promotes Neighborhoods of Transcriptional Regulation Across Eukaryotes. |
| Q26861197 | Enhancer malfunction in cancer |
| Q34046402 | Enhancers as non-coding RNA transcription units: recent insights and future perspectives |
| Q36012704 | Enrichment of H3K9me2 on Unsynapsed Chromatin in Caenorhabditis elegans Does Not Target de Novo Sites |
| Q37871545 | Epigenetics in C. elegans: facts and challenges |
| Q47137449 | Evaluation of Sox2 binding affinities for distinct DNA patterns using steered molecular dynamics simulation |
| Q36622852 | Evidence for compensatory upregulation of expressed X-linked genes in mammals, Caenorhabditis elegans and Drosophila melanogaster |
| Q34362921 | Evidence for sequence biases associated with patterns of histone methylation |
| Q37495767 | Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors |
| Q33744951 | Evidence for the biogenesis of more than 1,000 novel human microRNAs |
| Q38808801 | Evolution of Epigenetic Regulation in Vertebrate Genomes |
| Q28730461 | Evolution of biological interaction networks: from models to real data |
| Q36032955 | Evolutionary conservation of histone modifications in mammals |
| Q37683468 | Evolutionary conservation of the eumetazoan gene regulatory landscape |
| Q41849996 | Evolutionary insights into T-type Ca2+ channel structure, function, and ion selectivity from the Trichoplax adhaerens homologue. |
| Q33923485 | Experimental and Computational Considerations in the Study of RNA-Binding Protein-RNA Interactions |
| Q36363430 | Exploring spatially adjacent TFBS-clustered regions with Hi-C data |
| Q34343663 | Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data |
| Q36056550 | Extensive identification and analysis of conserved small ORFs in animals |
| Q37224364 | Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network |
| Q42209149 | Extreme HOT regions are CpG-dense promoters in C. elegans and humans |
| Q40986137 | FEATnotator: A tool for integrated annotation of sequence features and variation, facilitating interpretation in genomics experiments. |
| Q46178236 | FMRFamide-like peptides expand the behavioral repertoire of a densely connected nervous system. |
| Q64900195 | Fast genetic mapping of complex traits in C. elegans using millions of individuals in bulk. |
| Q36306108 | Fast, scalable prediction of deleterious noncoding variants from functional and population genomic data |
| Q40863378 | Fast, sensitive discovery of conserved genome-wide motifs |
| Q36266443 | Filarial and Wolbachia genomics |
| Q35910252 | Finding a balance: how diverse dosage compensation strategies modify histone h4 to regulate transcription |
| Q35079239 | Fine mapping of Rcr1 and analyses of its effect on transcriptome patterns during infection by Plasmodiophora brassicae |
| Q36109601 | First insights into the nature and evolution of antisense transcription in nematodes |
| Q92921156 | FisherMP: fully parallel algorithm for detecting combinatorial motifs from large ChIP-seq datasets |
| Q40626323 | FlyVar: a database for genetic variation in Drosophila melanogaster |
| Q39177202 | Fully automated high-throughput chromatin immunoprecipitation for ChIP-seq: identifying ChIP-quality p300 monoclonal antibodies |
| Q37661957 | FunCoup 3.0: database of genome-wide functional coupling networks |
| Q56889474 | Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant |
| Q35784256 | Functional annotation of HOT regions in the human genome: implications for human disease and cancer. |
| Q34632366 | Functional consequences of developmentally regulated alternative splicing |
| Q83232700 | Functional genomics: the modENCODE guide to the genome |
| Q38300188 | Functional transcription factor target discovery via compendia of binding and expression profiles. |
| Q40627472 | GATA transcription factor as a likely key regulator of the Caenorhabditis elegans innate immune response against gut pathogens |
| Q38438110 | GExplore 1.4: An expanded web interface for queries on Caenorhabditis elegans protein and gene function |
| Q90504395 | GLP-1 Notch-LAG-1 CSL control of the germline stem cell fate is mediated by transcriptional targets lst-1 and sygl-1 |
| Q46710963 | Gametic selection, developmental trajectories, and extrinsic heterogeneity in Haldane's rule |
| Q38812334 | Gene Function Prediction Based on Developmental Transcriptomes of the Two Sexes in C. elegans |
| Q39780720 | Gene networks and developmental context: the importance of understanding complex gene expression patterns in evolution |
| Q93047701 | Genetic markers enable the verification and manipulation of the dauer entry decision |
| Q38828884 | Genetic sources of population epigenomic variation |
| Q52713285 | Genetics. Revealing the dark matter of the genome. |
| Q59043845 | Genome 'census' reveals hidden riches |
| Q33741805 | Genome-wide analysis links emerin to neuromuscular junction activity in Caenorhabditis elegans. |
| Q38709880 | Genome-wide analysis of condensin binding in Caenorhabditis elegans |
| Q46336976 | Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq. |
| Q30561820 | Genome-wide epigenetic data facilitate understanding of disease susceptibility association studies |
| Q35989390 | Genome-wide errant targeting by Hairy |
| Q36134892 | Genome-wide identification and characterisation of HOT regions in the human genome. |
| Q30525712 | Genome-wide in silico prediction of gene expression. |
| Q34215626 | Genome-wide localization of replication factors |
| Q34590382 | Genome-wide map of regulatory interactions in the human genome |
| Q35534936 | Genome-wide profiling of the C. elegans dsRNAome |
| Q38384099 | Genomic Database Searching |
| Q50020655 | Genomic Identification and Functional Characterization of Essential Genes in Caenorhabditis elegans. |
| Q21144925 | Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides |
| Q37135787 | Genomic and expression analysis of transition proteins in Drosophila |
| Q101476372 | Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm |
| Q38019305 | Genomic approaches towards finding cis-regulatory modules in animals |
| Q42745731 | Genomic data integration for ecological and evolutionary traits in non-model organisms |
| Q59793212 | Genomic identification and functional analysis of essential genes in Caenorhabditis elegans |
| Q42623177 | Genomics and transcriptomics across the diversity of the Nematoda |
| Q60321312 | Genomics of Phenotypic Plasticity in Aphids |
| Q50638193 | Genomics: Hiding in plain sight. |
| Q83529110 | Genotyping gastric cancer |
| Q38032802 | Germ cell specification |
| Q26786615 | Getting Down to Specifics: Profiling Gene Expression and Protein-DNA Interactions in a Cell Type-Specific Manner |
| Q34332382 | Global characterization of the oocyte-to-embryo transition in Caenorhabditis elegans uncovers a novel mRNA clearance mechanism |
| Q64121194 | Global transcriptional regulation of innate immunity by ATF-7 in C. elegans |
| Q36676559 | H3K23me2 is a new heterochromatic mark in Caenorhabditis elegans |
| Q64092600 | H3K9me3 is required for inheritance of small RNAs that target a unique subset of newly evolved genes |
| Q48115090 | HOP-1 Presenilin Deficiency Causes a Late-Onset Notch Signaling Phenotype That Affects Adult Germline Function in Caenorhabditis elegans |
| Q42085279 | HOT DNAs: a novel class of developmental enhancers |
| Q92203183 | HOT or not: examining the basis of high-occupancy target regions |
| Q41766976 | HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature |
| Q64056478 | HSP-4/BiP expression in secretory cells is regulated by a developmental program and not by the unfolded protein response |
| Q36137610 | Hepatic Bmal1 Regulates Rhythmic Mitochondrial Dynamics and Promotes Metabolic Fitness |
| Q34590445 | Heritable variation of mRNA decay rates in yeast |
| Q64234767 | Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood () |
| Q89820747 | Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors |
| Q42588662 | High nucleosome occupancy is encoded at X-linked gene promoters in C. elegans |
| Q38843513 | High-confidence coding and noncoding transcriptome maps |
| Q38258264 | High-resolution digital profiling of the epigenome |
| Q36833441 | High-resolution mapping of H4K16 and H3K23 acetylation reveals conserved and unique distribution patterns in Arabidopsis and rice |
| Q35634495 | High-resolution mapping of open chromatin in the rice genome |
| Q95818134 | High-throughput capturing and characterization of mutations in essential genes of Caenorhabditis elegans |
| Q26823498 | High-throughput sequencing for biology and medicine |
| Q36660143 | High-throughput sequencing reveals extraordinary fluidity of miRNA, piRNA, and siRNA pathways in nematodes |
| Q50278958 | Histone H3K9 methylation is dispensable for Caenorhabditis elegans development but suppresses RNA:DNA hybrid-associated repeat instability. |
| Q38064095 | Histone lysine methylation dynamics: establishment, regulation, and biological impact |
| Q37016028 | Hitting two birds with one stone: The unforeseen consequences of nested gene knockouts in Caenorhabditis elegans |
| Q34414322 | Holocentromeres are dispersed point centromeres localized at transcription factor hotspots |
| Q37591542 | Homeland security in the C. elegans germ line: insights into the biogenesis and function of piRNAs |
| Q35018004 | Human genome replication proceeds through four chromatin states. |
| Q42083354 | IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC. |
| Q34125015 | IQSeq: integrated isoform quantification analysis based on next-generation sequencing |
| Q91858157 | Identification and Conservation Analysis of Cis-Regulatory Elements in Pig Liver |
| Q36325007 | Identification of Candidate Functional Elements in the Genome from ChIP-seq Data |
| Q35806459 | Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space. |
| Q37719263 | Identification of an RNA Polymerase III Regulator Linked to Disease-Associated Protein Aggregation |
| Q63649330 | Identification of functional long non-coding RNAs in C. elegans |
| Q35117066 | Identifying transcriptional cis-regulatory modules in animal genomes. |
| Q35134202 | Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq). |
| Q35659976 | In vivo and transcriptome-wide identification of RNA binding protein target sites |
| Q41221947 | Increased mitochondrial fusion allows the survival of older animals in diverse C. elegans longevity pathways. |
| Q37681037 | Increased sensitivity and accuracy of a single-stranded DNA splint-mediated ligation assay (sPAT) reveals poly(A) tail length dynamics of developmentally regulated mRNAs |
| Q36971902 | Inference of natural selection from interspersed genomic elements based on polymorphism and divergence |
| Q36280574 | Inferring direct DNA binding from ChIP-seq |
| Q36410041 | Inhibition of elongin C promotes longevity and protein homeostasis via HIF-1 in C. elegans |
| Q64055201 | Innovative strategies for annotating the "relationSNP" between variants and molecular phenotypes |
| Q27334849 | Insulin/IGF-1 and hypoxia signaling act in concert to regulate iron homeostasis in Caenorhabditis elegans |
| Q31150517 | Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes |
| Q40776762 | Integrative Analysis Reveals Regulatory Programs in Endometriosis |
| Q30607520 | Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions. |
| Q95933345 | Integrative analysis of reference epigenomes in 20 rice varieties |
| Q22065599 | Integrative annotation of variants from 1092 humans: application to cancer genomics |
| Q24632836 | Integrative epigenomic mapping defines four main chromatin states in Arabidopsis |
| Q28513559 | Interplay between structure-specific endonucleases for crossover control during Caenorhabditis elegans meiosis |
| Q42373224 | Intricate and Cell Type-Specific Populations of Endogenous Circular DNA (eccDNA) in Caenorhabditis elegans and Homo sapiens. |
| Q35396163 | Isolation of specific neurons from C. elegans larvae for gene expression profiling |
| Q30486475 | JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles |
| Q36793546 | JBrowse: a dynamic web platform for genome visualization and analysis |
| Q33675663 | Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. |
| Q90386322 | Learning causal networks using inducible transcription factors and transcriptome-wide time series |
| Q35970467 | Lipid-mediated regulation of SKN-1/Nrf in response to germ cell absence |
| Q33698066 | Locking the genome: nuclear organization and cell fate |
| Q36446242 | Long noncoding RNAs in C. elegans |
| Q35148864 | Long-read sequencing of chicken transcripts and identification of new transcript isoforms |
| Q33606421 | Loss-of-function of β-catenin bar-1 slows development and activates the Wnt pathway in Caenorhabditis elegans |
| Q64976065 | MRG-1/MRG15 Is a Barrier for Germ Cell to Neuron Reprogramming in Caenorhabditis elegans. |
| Q33566414 | MUT-14 and SMUT-1 DEAD box RNA helicases have overlapping roles in germline RNAi and endogenous siRNA formation |
| Q33741943 | Machine learning and genome annotation: a match meant to be? |
| Q33352054 | Making sense of chromatin states |
| Q35535448 | Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs |
| Q40749005 | Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. |
| Q37142704 | Mapping yeast transcriptional networks |
| Q37401098 | Maps of context-dependent putative regulatory regions and genomic signal interactions. |
| Q37366544 | Mated progeny production is a biomarker of aging in Caenorhabditis elegans |
| Q33799118 | Measuring the evolutionary rewiring of biological networks |
| Q37371435 | Meiotic recombination and the crossover assurance checkpoint in Caenorhabditis elegans |
| Q50487885 | Meis/UNC-62 isoform dependent regulation of CoupTF-II/UNC-55 and GABAergic motor neuron subtype differentiation. |
| Q34179638 | Membrane protein insertion at the endoplasmic reticulum |
| Q35868771 | Membrane-associated collagens with interrupted triple-helices (MACITs): evolution from a bilaterian common ancestor and functional conservation in C. elegans |
| Q64100385 | Meta-analysis suggests evidence of novel stress-related pathway components in Orsay virus - Caenorhabditis elegans viral model |
| Q35952766 | Metazoan tRNA introns generate stable circular RNAs in vivo |
| Q34400878 | MicroRNAs mediate dietary-restriction-induced longevity through PHA-4/FOXA and SKN-1/Nrf transcription factors |
| Q37242006 | Microsporidia Intracellular Development Relies on Myc Interaction Network Transcription Factors in the Host |
| Q34115510 | Modeling epigenome folding: formation and dynamics of topologically associated chromatin domains. |
| Q35672244 | Modeling the relative relationship of transcription factor binding and histone modifications to gene expression levels in mouse embryonic stem cells |
| Q36243202 | Modular combinatorial binding among human trans-acting factors reveals direct and indirect factor binding |
| Q103836777 | Molecular and evolutionary processes generating variation in gene expression |
| Q43984796 | Molecular biology: A fly in the face of genomics |
| Q92463016 | Molecular evolution across developmental time reveals rapid divergence in early embryogenesis |
| Q33784387 | Molecular hyperdiversity and evolution in very large populations |
| Q37624780 | Molecular neuroanatomy: a generation of progress |
| Q40524322 | Molluscs as models for translational medicine. |
| Q36719136 | Mondo complexes regulate TFEB via TOR inhibition to promote longevity in response to gonadal signals |
| Q39628462 | Multidimensional regulation of gene expression in the C. elegans embryo |
| Q40025370 | Multiple cis elements and GATA factors regulate a cuticle collagen gene in Caenorhabditis elegans |
| Q34276681 | Multiple insert size paired-end sequencing for deconvolution of complex transcriptomes |
| Q33732230 | Multiple transcription factors directly regulate Hox gene lin-39 expression in ventral hypodermal cells of the C. elegans embryo and larva, including the hypodermal fate regulators LIN-26 and ELT-6. |
| Q36746435 | Mutagenesis of GATA motifs controlling the endoderm regulator elt-2 reveals distinct dominant and secondary cis-regulatory elements |
| Q33883789 | Nematodes: the worm and its relatives |
| Q34807839 | Networking in a global world: establishing functional connections between neural splicing regulators and their target transcripts |
| Q26764829 | Neurogenomics: An opportunity to integrate neuroscience, genomics and bioinformatics research in Africa |
| Q30593939 | New insights from existing sequence data: generating breakthroughs without a pipette |
| Q28548688 | New links between protein N-terminal acetylation, dauer diapause, and the insulin/IGF-1 signaling pathway in Caenorhabditis elegans |
| Q37889135 | Non-coding RNAs in schistosomes: an unexplored world |
| Q38071050 | Non-random mutation: the evolution of targeted hypermutation and hypomutation |
| Q35748969 | Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes |
| Q42110668 | Nonspecific protein-DNA binding is widespread in the yeast genome |
| Q33575741 | Nuclear RNAi contributes to the silencing of off-target genes and repetitive sequences in Caenorhabditis elegans |
| Q47217714 | Nuclear receptors in cancer - uncovering new and evolving roles through genomic analysis. |
| Q36285402 | Nutritional control of mRNA isoform expression during developmental arrest and recovery in C. elegans |
| Q92914364 | ORSO (Online Resource for Social Omics): A data-driven social network connecting scientists to genomics datasets |
| Q98164632 | Occupancy maps of 208 chromatin-associated proteins in one human cell type |
| Q36739541 | Oct4 switches partnering from Sox2 to Sox17 to reinterpret the enhancer code and specify endoderm |
| Q38840634 | Omicseq: a web-based search engine for exploring omics datasets. |
| Q34356274 | One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data |
| Q37832806 | Operating on chromatin, a colorful language where context matters |
| Q55432540 | Opposing roles of microRNA Argonautes during Caenorhabditis elegans aging. |
| Q35926030 | Organotellurium and organoselenium compounds attenuate Mn-induced toxicity in Caenorhabditis elegans by preventing oxidative stress. |
| Q35007364 | OrthoList: a compendium of C. elegans genes with human orthologs |
| Q35939502 | Overlapping cell population expression profiling and regulatory inference in C. elegans |
| Q34246915 | PIWI associated siRNAs and piRNAs specifically require the Caenorhabditis elegans HEN1 ortholog henn-1. |
| Q54603099 | PLX4032 and melanoma: resistance, expectations and uncertainty. |
| Q34397259 | Pancreatic islet enhancer clusters enriched in type 2 diabetes risk-associated variants |
| Q38976283 | Past Roadblocks and New Opportunities in Transcription Factor Network Mapping. |
| Q34332378 | Paternal RNA contributions in the Caenorhabditis elegans zygote |
| Q33893293 | PeakRanger: a cloud-enabled peak caller for ChIP-seq data |
| Q98164639 | Perspectives on ENCODE |
| Q35343622 | Physiological roles for mafr-1 in reproduction and lipid homeostasis |
| Q46250095 | Piecing together cis-regulatory networks: insights from epigenomics studies in plants |
| Q34548233 | Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin |
| Q33631279 | Pol II docking and pausing at growth and stress genes in C. elegans |
| Q35248792 | Pol III binding in six mammals shows conservation among amino acid isotypes despite divergence among tRNA genes. |
| Q36072539 | Poly-acetylated chromatin signatures are preferred epitopes for site-specific histone H4 acetyl antibodies |
| Q37294202 | Positive and negative design for nonconsensus protein-DNA binding affinity in the vicinity of functional binding sites |
| Q35044479 | Predicting tissue specific transcription factor binding sites |
| Q33777987 | Prediction and characterization of noncoding RNAs in C. elegans by integrating conservation, secondary structure, and high-throughput sequencing and array data |
| Q40776050 | Predominant contribution of cis-regulatory divergence in the evolution of mouse alternative splicing |
| Q91857984 | Primary transcripts: From the discovery of RNA processing to current concepts of gene expression - Review |
| Q30385682 | Principles of metadata organization at the ENCODE data coordination center. |
| Q36549002 | Probabilistic modelling of chromatin code landscape reveals functional diversity of enhancer-like chromatin states |
| Q34489707 | Profiling the transcription factor regulatory networks of human cell types |
| Q49790105 | Proliferation of regulatory DNA elements derived from transposable elements in the maize genome. |
| Q30537180 | Promoter- and RNA polymerase II-dependent hsp-16 gene association with nuclear pores in Caenorhabditis elegans |
| Q28084330 | Protein-DNA binding in high-resolution |
| Q30651736 | Proteogenomic database construction driven from large scale RNA-seq data |
| Q33676153 | Proteolytic processing of the extracellular scaffolding protein LEV-9 is required for clustering acetylcholine receptors. |
| Q36731839 | Pseudo-Reference-Based Assembly of Vertebrate Transcriptomes |
| Q36208949 | Quantitative analysis of the chromatin proteome in disease reveals remodeling principles and identifies high mobility group protein B2 as a regulator of hypertrophic growth |
| Q34046663 | RNA polymerase II transcription elongation and Pol II CTD Ser2 phosphorylation: A tail of two kinases |
| Q28710204 | RNA sequencing reveals a diverse and dynamic repertoire of the Xenopus tropicalis transcriptome over development |
| Q35146258 | RNA structure and the mechanisms of alternative splicing. |
| Q34711458 | RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain. |
| Q51549182 | RNA-Seq unleashed. |
| Q30558102 | RNA-binding protein GLD-1/quaking genetically interacts with the mir-35 and the let-7 miRNA pathways in Caenorhabditis elegans. |
| Q27322512 | RSR-2, the Caenorhabditis elegans ortholog of human spliceosomal component SRm300/SRRM2, regulates development by influencing the transcriptional machinery |
| Q47231192 | Rapid genome shrinkage in a self-fertile nematode reveals sperm competition proteins |
| Q41383342 | Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans |
| Q37883698 | Reconstructing regulatory network transitions |
| Q37651849 | Recurrently deregulated lncRNAs in hepatocellular carcinoma |
| Q52617079 | Regulation of C. elegans L4 cuticle collagen genes by the heterochronic protein LIN-29. |
| Q27322896 | Regulation of C. elegans neuronal differentiation by the ZEB-family factor ZAG-1 and the NK-2 homeodomain factor CEH-28 |
| Q46244949 | Regulation of Crossover Frequency and Distribution during Meiotic Recombination. |
| Q27316903 | Regulation of DCC localization by HTZ-1/H2A.Z and DPY-30 does not correlate with H3K4 methylation levels |
| Q38858919 | Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System |
| Q42359773 | Regulation of UNC-130/FOXD-mediated mesodermal patterning in C. elegans |
| Q37158599 | Regulation of chromatin structure by long noncoding RNAs: focus on natural antisense transcripts |
| Q28286686 | Regulation of nucleosome dynamics by histone modifications |
| Q42429601 | Regulatory analysis of the C. elegans genome with spatiotemporal resolution |
| Q34396347 | Regulatory elements of Caenorhabditis elegans ribosomal protein genes |
| Q28084486 | Regulatory roles of RNA binding proteins in the nervous system of C. elegans |
| Q48148054 | Repressive Chromatin in Caenorhabditis elegans: Establishment, Composition, and Function |
| Q41454253 | Robust Identification of Developmentally Active Endothelial Enhancers in Zebrafish Using FANS-Assisted ATAC-Seq. |
| Q35955737 | Roles for microRNAs in conferring robustness to biological processes |
| Q34611226 | Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans |
| Q90237766 | SL-quant: a fast and flexible pipeline to quantify spliced leader trans-splicing events from RNA-seq data |
| Q34395310 | SLX-1 is required for maintaining genomic integrity and promoting meiotic noncrossovers in the Caenorhabditis elegans germline |
| Q38482819 | SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. |
| Q50528439 | Securing Neuronal Cell Fate in C. elegans. |
| Q27001247 | Seeing elegance in gene regulatory networks of the worm |
| Q90242569 | Selection and gene flow shape niche-associated variation in pheromone response |
| Q37589376 | Sex-specific chromatin landscapes in an ultra-compact chordate genome. |
| Q26863643 | Short linear motifs - ex nihilo evolution of protein regulation |
| Q101166072 | Single-cell RNA profiling links ncRNAs to spatiotemporal gene expression during C. elegans embryogenesis |
| Q26766140 | Single-cell Transcriptome Study as Big Data |
| Q34497793 | Single-cell epigenomics: techniques and emerging applications |
| Q34089210 | Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation |
| Q33741892 | Spatial expression of transcription factors in Drosophila embryonic organ development |
| Q34229982 | Spatial proximity and similarity of the epigenetic state of genome domains. |
| Q30930652 | Spatial reconstruction of single-cell gene expression data |
| Q39069162 | Spatiotemporal coupling and decoupling of gene transcription with DNA replication origins during embryogenesis in C. elegans |
| Q33899196 | Spatiotemporal expression profiling of long intervening noncoding RNAs in Caenorhabditis elegans |
| Q43003988 | Spurious transcription factor binding: non-functional or genetically redundant? |
| Q37417986 | Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes |
| Q35047843 | Strategic approaches to unraveling genetic causes of cardiovascular diseases |
| Q33974916 | Structural and functional evaluation of C. elegans filamins FLN-1 and FLN-2. |
| Q34340507 | Studying and modelling dynamic biological processes using time-series gene expression data |
| Q33810396 | Superresolution microscopy reveals the three-dimensional organization of meiotic chromosome axes in intact Caenorhabditis elegans tissue |
| Q38185356 | Synthetic chromatin approaches to probe the writing and erasing of histone modifications |
| Q33982410 | Synthetic spike-in standards for RNA-seq experiments |
| Q91595498 | Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues |
| Q33925015 | Systematic bias in high-throughput sequencing data and its correction by BEADS. |
| Q38996854 | Systems-level quantification of division timing reveals a common genetic architecture controlling asynchrony and fate asymmetry |
| Q35571086 | TIP: a probabilistic method for identifying transcription factor target genes from ChIP-seq binding profiles |
| Q37218490 | TRA-1 ChIP-seq reveals regulators of sexual differentiation and multilevel feedback in nematode sex determination |
| Q34145702 | Tempo and mode in evolution of transcriptional regulation |
| Q42984279 | The C. elegans SNAPc component SNPC-4 coats piRNA domains and is globally required for piRNA abundance |
| Q30498221 | The C. elegans SoxC protein SEM-2 opposes differentiation factors to promote a proliferative blast cell fate in the postembryonic mesoderm |
| Q34727141 | The C. elegans gene pan-1 encodes novel transmembrane and cytoplasmic leucine-rich repeat proteins and promotes molting and the larva to adult transition |
| Q39298926 | The Caenorhabditis elegans homeobox gene ceh-19 is required for MC motorneuron function |
| Q35088043 | The Caenorhabditis elegans intermediate-size transcriptome shows high degree of stage-specific expression |
| Q27312444 | The DAF-16 FOXO transcription factor regulates natc-1 to modulate stress resistance in Caenorhabditis elegans, linking insulin/IGF-1 signaling to protein N-terminal acetylation |
| Q27311093 | The Developmental Intestinal Regulator ELT-2 Controls p38-Dependent Immune Responses in Adult C. elegans |
| Q91372436 | The ENCODE Portal as an Epigenomics Resource |
| Q34079187 | The ERI-6/7 helicase acts at the first stage of an siRNA amplification pathway that targets recent gene duplications |
| Q47109257 | The Encyclopedia of DNA elements (ENCODE): data portal update |
| Q35588925 | The GATA factor elt-1 regulates C. elegans developmental timing by promoting expression of the let-7 family microRNAs |
| Q34524678 | The GATA transcription factor egl-27 delays aging by promoting stress resistance in Caenorhabditis elegans |
| Q90074266 | The Hox Gene egl-5 Acts as a Terminal Selector for VD13 Development via Wnt Signaling |
| Q35871542 | The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney |
| Q45819556 | The LIM homeobox gene ceh-14 is required for phasmid function and neurite outgrowth |
| Q39045655 | The Lipocalin LPR-1 Cooperates with LIN-3/EGF Signaling To Maintain Narrow Tube Integrity in Caenorhabditis elegans |
| Q42733384 | The Little Fly that Could: Wizardry and Artistry of Drosophila Genomics. |
| Q26849595 | The Mediator complex: a central integrator of transcription |
| Q36397272 | The Oxidative Stress Response in Caenorhabditis elegans Requires the GATA Transcription Factor ELT-3 and SKN-1/Nrf2. |
| Q28593995 | The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation |
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