| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1031389085 |
| P356 | DOI | 10.1186/GB-2009-10-7-R80 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1186/gb-2009-10-7-r80 |
| P932 | PMC publication ID | 2728534 |
| P698 | PubMed publication ID | 19627575 |
| P5875 | ResearchGate publication ID | 26690896 |
| P50 | author | Michael B. Eisen | Q3308179 |
| Jingyi Jessica Li | Q57003057 | ||
| Peter J. Bickel | Q7174850 | ||
| P2093 | author name string | Mark D Biggin | |
| Xiao-Yong Li | |||
| James B Brown | |||
| David W Knowles | |||
| Aaron Hechmer | |||
| Brandi P Grondona | |||
| Hou Cheng Chu | |||
| Lisa Simirenko | |||
| Lucy Zeng | |||
| Mark Stapleton | |||
| Soile V E Keränen | |||
| Stewart MacArthur | |||
| P2860 | cites work | Expression, modification, and localization of the fushi tarazu protein in Drosophila embryos. | Q54744440 |
| The general affinity of lac repressor for E. coli DNA: Implications for gene regulation in procaryotes and eucaryotes | Q66894591 | ||
| The snail gene required for mesoderm formation in Drosophila is expressed dynamically in derivatives of all three germ layers | Q67956619 | ||
| Expression, function, and regulation of the hairy segmentation protein in the Drosophila embryo | Q68000583 | ||
| Chromatin structure mapping in vivo using methyltransferases | Q71747800 | ||
| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project | Q21061203 | ||
| Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm | Q21563555 | ||
| Gene ontology: tool for the unification of biology | Q23781406 | ||
| Core transcriptional regulatory circuitry in human embryonic stem cells | Q24322016 | ||
| Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome | Q24530466 | ||
| Foxp3 occupancy and regulation of key target genes during T-cell stimulation | Q24623384 | ||
| Computational identification of developmental enhancers: conservation and function of transcription factor binding-site clusters in Drosophila melanogaster and Drosophila pseudoobscura | Q24801531 | ||
| Transcriptional control in the segmentation gene network of Drosophila | Q24803742 | ||
| WebLogo: A Sequence Logo Generator | Q27860646 | ||
| Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs | Q28246401 | ||
| Mutations affecting segment number and polarity in Drosophila | Q28273492 | ||
| An initial blueprint for myogenic differentiation | Q28588060 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| A gene complex controlling segmentation in Drosophila | Q29547506 | ||
| A global map of p53 transcription-factor binding sites in the human genome | Q29614400 | ||
| Transcription factors: structural families and principles of DNA recognition | Q29615317 | ||
| Transcription regulation and animal diversity | Q29618752 | ||
| The daughterless gene product in Drosophila is a nuclear protein that is broadly expressed throughout the organism during development | Q30466688 | ||
| daughterless is essential for neuronal precursor differentiation but not for initiation of neuronal precursor formation in Drosophila embryo | Q46037990 | ||
| Silencers and domains of generalized repression | Q46090173 | ||
| dorsal-twist interactions establish snail expression in the presumptive mesoderm of the Drosophila embryo | Q46340431 | ||
| The Drosophila schnurri gene acts in the Dpp/TGF beta signaling pathway and encodes a transcription factor homologous to the human MBP family | Q46961403 | ||
| The Drosophila fish-hook gene encodes a HMG domain protein essential for segmentation and CNS development | Q47070101 | ||
| The Dichaete gene of Drosophila melanogaster encodes a SOX-domain protein required for embryonic segmentation. | Q47070144 | ||
| Three maternal coordinate systems cooperate in the patterning of the Drosophila head. | Q47070235 | ||
| Establishing neuroblast-specific gene expression in the Drosophila CNS: huckebein is activated by Wingless and Hedgehog and repressed by Engrailed and Gooseberry. | Q47070443 | ||
| The control of cell fate along the dorsal-ventral axis of the Drosophila embryo. | Q47071328 | ||
| Analysis of Krüppel protein distribution during early Drosophila development reveals posttranscriptional regulation | Q47071842 | ||
| Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes | Q47071847 | ||
| Eve and ftz regulate a wide array of genes in blastoderm embryos: the selector homeoproteins directly or indirectly regulate most genes in Drosophila | Q47071953 | ||
| Medea is a Drosophila Smad4 homolog that is differentially required to potentiate DPP responses. | Q47072118 | ||
| Schnurri is required for Drosophila Dpp signaling and encodes a zinc finger protein similar to the mammalian transcription factor PRDII-BF1. | Q47072347 | ||
| The Drosophila segmentation gene runt encodes a novel nuclear regulatory protein that is also expressed in the developing nervous system | Q47072448 | ||
| Stepwise formation of a SMAD activity gradient during dorsal-ventral patterning of the Drosophila embryo | Q47577828 | ||
| Unfolding the mysteries of heterochromatin. | Q48018648 | ||
| Drosophila Paired regulates late even-skipped expression through a composite binding site for the paired domain and the homeodomain. | Q48060768 | ||
| A Drosophila protein related to the human zinc finger transcription factor PRDII/MBPI/HIV-EP1 is required for dpp signaling. | Q48070213 | ||
| The Drosophila sloppy paired locus encodes two proteins involved in segmentation that show homology to mammalian transcription factors | Q48172084 | ||
| Relocalization of the dorsal protein from the cytoplasm to the nucleus correlates with its function | Q48280400 | ||
| Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. | Q50725987 | ||
| Sloppy paired acts as the downstream target of wingless in the Drosophila CNS and interaction between sloppy paired and gooseberry inhibits sloppy paired during neurogenesis. | Q52171808 | ||
| In vivo requirement for the paired domain and homeodomain of the paired segmentation gene product. | Q52200200 | ||
| Positioning adjacent pair-rule stripes in the posterior Drosophila embryo | Q52214149 | ||
| The Drosophila segmentation gene runt has an extended cis-regulatory region that is required for vital expression at other stages of development | Q52229541 | ||
| Temporal and spatial relationships between segmentation and homeotic gene expression in Drosophila embryos: distributions of the fushi tarazu, engrailed, Sex combs reduced, Antennapedia, and Ultrabithorax proteins. | Q52252525 | ||
| Control and function of terminal gap gene activity in the posterior pole region of the Drosophila embryo | Q52445677 | ||
| Spatial regulation of the gap gene giant during Drosophila development. | Q52446989 | ||
| The graded distribution of the dorsal morphogen is initiated by selective nuclear transport in Drosophila. | Q52454014 | ||
| A molecular gradient in early Drosophila embryos and its role in specifying the body pattern. | Q52456264 | ||
| Localization of the fushi tarazu protein during Drosophila embryogenesis. | Q52457512 | ||
| Changing rates of DNA and RNA synthesis in Drosophila embryos | Q52516271 | ||
| Interacting functions of snail, twist and huckebein during the early development of germ layers in Drosophila. | Q52542281 | ||
| The effects of selection against spurious transcription factor binding sites. | Q52950810 | ||
| Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution I: data acquisition pipeline | Q33267397 | ||
| Accessibility of transcriptionally inactive genes is specifically reduced at homeoprotein-DNA binding sites in Drosophila | Q33616371 | ||
| A comparison of in vivo and in vitro DNA-binding specificities suggests a new model for homeoprotein DNA binding in Drosophila embryos | Q33890600 | ||
| Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects | Q34214782 | ||
| The eve stripe 2 enhancer employs multiple modes of transcriptional synergy | Q34371968 | ||
| Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo | Q34378718 | ||
| Transcriptional regulation in Drosophila: the post-genome challenge | Q34495575 | ||
| A gradient of bicoid protein in Drosophila embryos | Q34687844 | ||
| REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila | Q34718350 | ||
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
| Three-dimensional morphology and gene expression in the Drosophila blastoderm at cellular resolution II: dynamics | Q35629798 | ||
| A core transcriptional network for early mesoderm development in Drosophila melanogaster | Q35649396 | ||
| Protein/DNA architecture of the DNase I hypersensitive region of the Drosophila hsp26 promoter | Q35984426 | ||
| Genomic profiling and expression studies reveal both positive and negative activities for the Drosophila Myb MuvB/dREAM complex in proliferating cells | Q36103645 | ||
| Genomic regulatory networks and animal development | Q36273945 | ||
| Global analysis of patterns of gene expression during Drosophila embryogenesis | Q36570645 | ||
| Gap gene properties of the pair-rule gene runt during Drosophila segmentation | Q36736085 | ||
| The origin of pattern and polarity in the Drosophila embryo | Q36749988 | ||
| Transcriptional regulatory networks in embryonic stem cells | Q37331007 | ||
| DNA binding specificity of two homeodomain proteins in vitro and in Drosophila embryos. | Q37671170 | ||
| Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo | Q38304339 | ||
| Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome | Q38314358 | ||
| Binding sites for metabolic disease related transcription factors inferred at base pair resolution by chromatin immunoprecipitation and genomic microarrays | Q38319977 | ||
| Gene regulatory functions of Drosophila fish-hook, a high mobility group domain Sox protein | Q38336749 | ||
| Transcription factor access to chromatin | Q39721189 | ||
| Relationships between p63 binding, DNA sequence, transcription activity, and biological function in human cells | Q40190617 | ||
| Compilation of vertebrate-encoded transcription factors | Q40411319 | ||
| Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila | Q40817691 | ||
| A novel spatial transcription pattern associated with the segmentation gene, giant, of Drosophila | Q40817942 | ||
| The Drosophila gene Medea demonstrates the requirement for different classes of Smads in dpp signaling | Q41033122 | ||
| Regulation and function of the terminal gap gene huckebein in the Drosophila blastoderm. | Q41059868 | ||
| cis-acting control elements for Krüppel expression in the Drosophila embryo | Q41242734 | ||
| From gradients to stripes in Drosophila embryogenesis: filling in the gaps | Q41279366 | ||
| Two homeo domain proteins bind with similar specificity to a wide range of DNA sites in Drosophila embryos. | Q41454917 | ||
| Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients | Q41967488 | ||
| Mapping the chromosomal targets of STAT1 by Sequence Tag Analysis of Genomic Enrichment (STAGE). | Q41977742 | ||
| Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. | Q42573541 | ||
| Sequence of the twist gene and nuclear localization of its protein in endomesodermal cells of early Drosophila embryos | Q42734921 | ||
| The Drosophila gene tailless is expressed at the embryonic termini and is a member of the steroid receptor superfamily | Q43983015 | ||
| A quantitative spatiotemporal atlas of gene expression in the Drosophila blastoderm | Q44427883 | ||
| Gradients of Krüppel and knirps gene products direct pair-rule gene stripe patterning in the posterior region of the Drosophila embryo | Q45287412 | ||
| Krüppel requirement for knirps enhancement reflects overlapping gap gene activities in the Drosophila embryo | Q45757474 | ||
| P433 | issue | 7 | |
| P921 | main subject | Drosophila | Q312154 |
| P304 | page(s) | R80 | |
| P577 | publication date | 2009-07-23 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions | |
| P478 | volume | 10 |
| Q64107553 | A Comprehensive Drosophila melanogaster Transcription Factor Interactome |
| Q34333375 | A Schnurri/Mad/Medea complex attenuates the dorsal-twist gradient readout at vnd. |
| Q46142882 | A catalog of Xenopus tropicalis transcription factors and their regional expression in the early gastrula stage embryo |
| Q35229726 | A cis-regulatory map of the Drosophila genome. |
| Q41845808 | A cluster to remember |
| Q33525010 | A comprehensive map of insulator elements for the Drosophila genome |
| Q34064257 | A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila |
| Q38303263 | A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. |
| Q41333816 | A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles |
| Q34192877 | A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis |
| Q42333586 | A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells |
| Q38534547 | A time of change: Dynamics of chromatin and transcriptional regulation during nuclear programming in early Drosophila development |
| Q27438090 | A widespread distribution of genomic CeMyoD binding sites revealed and cross validated by ChIP-Chip and ChIP-Seq techniques |
| Q64074763 | ATAC-seq reveals regional differences in enhancer accessibility during the establishment of spatial coordinates in the blastoderm |
| Q24614616 | Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data |
| Q36159460 | Activation of Ftz-F1-Responsive Genes through Ftz/Ftz-F1 Dependent Enhancers |
| Q82657415 | Allelic variation in the perennial ryegrass FLOWERING LOCUS T gene is associated with changes in flowering time across a range of populations |
| Q41877697 | An Enhancer's Length and Composition Are Shaped by Its Regulatory Task |
| Q35086669 | An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape |
| Q21061190 | Analysis of variation at transcription factor binding sites in Drosophila and humans |
| Q35247385 | BMPs regulate msx gene expression in the dorsal neuroectoderm of Drosophila and vertebrates by distinct mechanisms |
| Q28473313 | Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species |
| Q38673210 | Broadly expressed repressors integrate patterning across orthogonal axes in embryos |
| Q37631835 | CCAT: Combinatorial Code Analysis Tool for transcriptional regulation |
| Q36185754 | CTCF-dependent co-localization of canonical Smad signaling factors at architectural protein binding sites in D. melanogaster |
| Q37623991 | Challenges for modeling global gene regulatory networks during development: insights from Drosophila. |
| Q34012041 | Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast |
| Q21092435 | Chromatin landscape dictates HSF binding to target DNA elements |
| Q24632812 | Chromatin: constructing the big picture |
| Q37928811 | Circadian epigenomic remodeling and hepatic lipogenesis: lessons from HDAC3. |
| Q34307629 | Co-regulation of invected and engrailed by a complex array of regulatory sequences in Drosophila |
| Q33791354 | Co-regulatory expression quantitative trait loci mapping: method and application to endometrial cancer |
| Q35091271 | Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association |
| Q35011328 | Combinatorial binding predicts spatio-temporal cis-regulatory activity |
| Q36104408 | Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis. |
| Q35607633 | Common binding by redundant group B Sox proteins is evolutionarily conserved in Drosophila |
| Q61442417 | Comparative Genomics of Transcription Factor Binding in Drosophila |
| Q35030499 | Comprehensive analysis of the chromatin landscape in Drosophila melanogaster |
| Q28535025 | Computational identification of diverse mechanisms underlying transcription factor-DNA occupancy |
| Q47117108 | Conserved noncoding transcription and core promoter regulatory code in early Drosophila development. |
| Q36947215 | Context-dependent transcriptional interpretation of mitogen activated protein kinase signaling in the Drosophila embryo. |
| Q35314562 | Control of embryonic stem cell lineage commitment by core promoter factor, TAF3. |
| Q35164635 | Cooperative transcription factor associations discovered using regulatory variation |
| Q34361479 | Cooperativity and rapid evolution of cobound transcription factors in closely related mammals |
| Q36504410 | DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila |
| Q33507991 | Deciphering the genetic code of morphogenesis using functional genomics |
| Q37731441 | Deciphering the genome's regulatory code: the many languages of DNA. |
| Q35042943 | Decoupling of evolutionary changes in transcription factor binding and gene expression in mammals |
| Q34780596 | Defining the replication program through the chromatin landscape |
| Q34979900 | Degringolade, a SUMO-targeted ubiquitin ligase, inhibits Hairy/Groucho-mediated repression |
| Q41853860 | Developmental regulation of chromatin conformation by Hox proteins in Drosophila |
| Q49622066 | Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest. |
| Q26865492 | Disentangling the many layers of eukaryotic transcriptional regulation |
| Q92147748 | Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time |
| Q34988041 | Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. |
| Q33839459 | Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster |
| Q28308228 | Drosophila heat shock system as a general model to investigate transcriptional regulation |
| Q37548513 | Drosophila poised enhancers are generated during tissue patterning with the help of repression |
| Q42619112 | Dynamic CRM occupancy reflects a temporal map of developmental progression |
| Q47844892 | Dynamic genome wide expression profiling of Drosophila head development reveals a novel role of Hunchback in retinal glia cell development and blood-brain barrier integrity. |
| Q35068557 | Dynamic regulation of transcriptional states by chromatin and transcription factors. |
| Q35561152 | Dynamic reprogramming of chromatin accessibility during Drosophila embryo development |
| Q40620169 | Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development |
| Q35914852 | Effects of sequence variation on differential allelic transcription factor occupancy and gene expression |
| Q34505002 | Enhancer Turnover Is Associated with a Divergent Transcriptional Response to Glucocorticoid in Mouse and Human Macrophages |
| Q35942104 | Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo |
| Q42263744 | Enhancer diversity and the control of a simple pattern of Drosophila CNS midline cell expression |
| Q35173164 | Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition |
| Q93012125 | Eukaryotic transcription factors can track and control their target genes using DNA antennas |
| Q49859624 | Evidence for a hierarchical transcriptional circuit in Drosophila male germline involving testis-specific TAF and two gene-specific transcription factors, Mod and Acj6. |
| Q52801348 | Evidence for the temporal regulation of insect segmentation by a conserved sequence of transcription factors. |
| Q34245588 | Evolution of transcription factor binding in metazoans - mechanisms and functional implications |
| Q61453665 | Exploiting regulatory heterogeneity to systematically identify enhancers with high accuracy |
| Q21090201 | Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression |
| Q42362587 | F-MAP: A Bayesian approach to infer the gene regulatory network using external hints. |
| Q22065896 | Five-vertebrate ChIP-seq reveals the evolutionary dynamics of transcription factor binding |
| Q35007952 | Flanking sequence context-dependent transcription factor binding in early Drosophila development |
| Q35784256 | Functional annotation of HOT regions in the human genome: implications for human disease and cancer. |
| Q83876937 | Gene expression: Running to stand still |
| Q40924440 | Gene length may contribute to graded transcriptional responses in the Drosophila embryo |
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| Q28741383 | Genome-wide analysis of the binding of the Hox protein Ultrabithorax and the Hox cofactor Homothorax in Drosophila |
| Q35989390 | Genome-wide errant targeting by Hairy |
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| Q37286069 | Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. |
| Q34831419 | Genome-wide identification of binding sites for NAC and YABBY transcription factors and co-regulated genes during soybean seedling development by ChIP-Seq and RNA-Seq |
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| Q28741387 | Genome-wide tissue-specific occupancy of the Hox protein Ultrabithorax and Hox cofactor Homothorax in Drosophila |
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| Q34614125 | Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants |
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| Q42085279 | HOT DNAs: a novel class of developmental enhancers |
| Q41766976 | HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature |
| Q34803072 | Hairless is a cofactor for Runt-dependent transcriptional regulation |
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| Q37666396 | Impacts of the ubiquitous factor Zelda on Bicoid-dependent DNA binding and transcription in Drosophila |
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| Q64958026 | Inference of Transcription Factor Regulation Patterns Using Gene Expression Covariation in Natural Populations of Drosophila melanogaster. |
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| Q33921190 | Integrated genome-scale prediction of detrimental mutations in transcription networks |
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| Q28301622 | Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project |
| Q36281809 | Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster |
| Q36559698 | Intestinal master transcription factor CDX2 controls chromatin access for partner transcription factor binding |
| Q47558704 | Iterative random forests to discover predictive and stable high-order interactions |
| Q41938134 | Learning the transcriptional regulatory code |
| Q42484493 | Long- and short-range transcriptional repressors induce distinct chromatin states on repressed genes |
| Q35257584 | MARZ: an algorithm to combinatorially analyze gapped n-mer models of transcription factor binding |
| Q35935229 | Making sense of transcription networks |
| Q35535448 | Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs |
| Q34354921 | Massively parallel in vivo enhancer assay reveals that highly local features determine the cis-regulatory function of ChIP-seq peaks. |
| Q37854593 | Mathematical modeling of gene expression: a guide for the perplexed biologist |
| Q36042742 | Measuring gene expression noise in early Drosophila embryos: nucleus-to-nucleus variability |
| Q37252425 | Messenger RNA is a functional component of a chromatin insulator complex |
| Q33553059 | Model-based method for transcription factor target identification with limited data. |
| Q34493715 | Molecular analyses of juvenile granulosa cell tumors bearing AKT1 mutations provide insights into tumor biology and therapeutic leads. |
| Q35457132 | Molecular dissection of cis-regulatory modules at the Drosophila bithorax complex reveals critical transcription factor signature motifs. |
| Q38268538 | New insights in the clockwork mechanism regulating lineage specification: Lessons from the Drosophila nervous system. |
| Q34036908 | Non-additive interactions involving two distinct elements mediate sloppy-paired regulation by pair-rule transcription factors |
| Q37002881 | Nucleotide Interdependency in Transcription Factor Binding Sites in the Drosophila Genome |
| Q28604149 | Only accessible information is useful: insights from gradient-mediated patterning |
| Q38040346 | Packaging the fly genome: domains and dynamics |
| Q53825821 | Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo. |
| Q24625373 | Pioneer transcription factors: establishing competence for gene expression |
| Q34548233 | Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin |
| Q34510126 | Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state |
| Q36093899 | Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks |
| Q34318258 | Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos |
| Q33680989 | Quantitative analysis of the Drosophila segmentation regulatory network using pattern generating potentials |
| Q28477071 | Quantitative models of the mechanisms that control genome-wide patterns of transcription factor binding during early Drosophila development |
| Q34865218 | REACTIN: regulatory activity inference of transcription factors underlying human diseases with application to breast cancer |
| Q57454242 | REDfly: the transcriptional regulatory element database for Drosophila |
| Q47651189 | Recruitment and delivery of the fission yeast Rst2 transcription factor via a local genome structure counteracts repression by Tup1-family corepressors. |
| Q35944760 | Response to the BMP gradient requires highly combinatorial inputs from multiple patterning systems in the Drosophila embryo |
| Q30392982 | Salvador-Warts-Hippo pathway in a developmental checkpoint monitoring helix-loop-helix proteins |
| Q38884770 | Sex combs reduced (Scr) regulatory region of Drosophila revisited |
| Q33791177 | Shape-based peak identification for ChIP-Seq |
| Q24617969 | Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities |
| Q41328427 | SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete |
| Q42249894 | Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks |
| Q34548340 | Spatial promoter recognition signatures may enhance transcription factor specificity in yeast |
| Q43003988 | Spurious transcription factor binding: non-functional or genetically redundant? |
| Q39070457 | Stable Binding of the Conserved Transcription Factor Grainy Head to its Target Genes Throughout Drosophila melanogaster Development |
| Q37341006 | Stepwise Progression of Embryonic Patterning |
| Q33756401 | Strategies for exploring TGF-β signaling in Drosophila |
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| Q36596534 | The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan |
| Q35062020 | The role of Dichaete in transcriptional regulation during Drosophila embryonic development |
| Q35557755 | The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding |
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| Q35746833 | Transcription factor binding site redundancy in embryonic enhancers of the Drosophila bithorax complex |
| Q35267846 | Transcription factor networks in Drosophila melanogaster |
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