scholarly article | Q13442814 |
P8978 | DBLP publication ID | journals/bmcbi/Joshi14 |
P6179 | Dimensions Publication ID | 1014642176 |
P356 | DOI | 10.1186/S12859-014-0412-0 |
P2888 | exact match | https://scigraph.springernature.com/pub.10.1186/s12859-014-0412-0 |
P8608 | Fatcat ID | release_qeulh5s3hvc3xkpiu2c2uone44 |
P932 | PMC publication ID | 4302108 |
P698 | PubMed publication ID | 25547756 |
P5875 | ResearchGate publication ID | 270291668 |
P2093 | author name string | Anagha Joshi | |
P2860 | cites work | A user's guide to the encyclopedia of DNA elements (ENCODE) | Q21092716 |
Model-based analysis of ChIP-Seq (MACS) | Q21183902 | ||
Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors | Q21183997 | ||
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities | Q24617969 | ||
Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 | ||
Negative and positive regulation of gene expression by mouse histone deacetylase 1 | Q24672508 | ||
VISTA Enhancer Browser--a database of tissue-specific human enhancers | Q24676452 | ||
Genome-wide nucleosome positioning during embryonic stem cell development | Q28277658 | ||
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
Oct4 and LIF/Stat3 additively induce Krüppel factors to sustain embryonic stem cell self-renewal. | Q51921401 | ||
Uncovering early response of gene regulatory networks in ESCs by systematic induction of transcription factors | Q28506983 | ||
ES cell pluripotency and germ-layer formation require the SWI/SNF chromatin remodeling component BAF250a | Q28508327 | ||
Wdr5 mediates self-renewal and reprogramming via the embryonic stem cell core transcriptional network | Q28513471 | ||
Esrrb is a pivotal target of the Gsk3/Tcf3 axis regulating embryonic stem cell self-renewal | Q28910178 | ||
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells | Q29547179 | ||
Connecting microRNA genes to the core transcriptional regulatory circuitry of embryonic stem cells | Q29615089 | ||
In vivo enhancer analysis of human conserved non-coding sequences | Q29616554 | ||
Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
Master transcription factors and mediator establish super-enhancers at key cell identity genes | Q29618062 | ||
Gene set control analysis predicts hematopoietic control mechanisms from genome-wide transcription factor binding data | Q30580583 | ||
Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data. | Q31157497 | ||
CpG_MI: a novel approach for identifying functional CpG islands in mammalian genomes | Q33566506 | ||
seqMINER: an integrated ChIP-seq data interpretation platform | Q33777909 | ||
Locus co-occupancy, nucleosome positioning, and H3K4me1 regulate the functionality of FOXA2-, HNF4A-, and PDX1-bound loci in islets and liver | Q34018312 | ||
Probabilistic inference for nucleosome positioning with MNase-based or sonicated short-read data | Q34185764 | ||
Dnmt3a is essential for hematopoietic stem cell differentiation | Q34237926 | ||
Mouse duplicate genes are as essential as singletons | Q34636141 | ||
Extensive low-affinity transcriptional interactions in the yeast genome | Q34881942 | ||
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines | Q35020492 | ||
Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila | Q36504410 | ||
Reduced Oct4 expression directs a robust pluripotent state with distinct signaling activity and increased enhancer occupancy by Oct4 and Nanog | Q36833192 | ||
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions | Q37309445 | ||
Transcriptional networks and chromatin remodeling controlling adipogenesis | Q37955512 | ||
Combinatorial transcriptional control in blood stem/progenitor cells: genome-wide analysis of ten major transcriptional regulators. | Q39649034 | ||
Analysis of multiple genomic sequence alignments: a web resource, online tools, and lessons learned from analysis of mammalian SCL loci. | Q40497945 | ||
HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature | Q41766976 | ||
A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals | Q42020759 | ||
HOT DNAs: a novel class of developmental enhancers | Q42085279 | ||
DNA-binding factors shape the mouse methylome at distal regulatory regions | Q42818364 | ||
DNA methylation and SETDB1/H3K9me3 regulate predominantly distinct sets of genes, retroelements, and chimeric transcripts in mESCs | Q42826399 | ||
A compendium of genome-wide hematopoietic transcription factor maps supports the identification of gene regulatory control mechanisms | Q44891300 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P304 | page(s) | 412 | |
P577 | publication date | 2014-12-30 | |
P1433 | published in | BMC Bioinformatics | Q4835939 |
P1476 | title | Mammalian transcriptional hotspots are enriched for tissue specific enhancers near cell type specific highly expressed genes and are predicted to act as transcriptional activator hubs | |
P478 | volume | 15 |
Q36160675 | Cell type-selective disease-association of genes under high regulatory load |
Q91973465 | Computational Biology Solutions to Identify Enhancers-target Gene Pairs |
Q59330161 | Insights into mammalian transcription control by systematic analysis of ChIP sequencing data |
Q36896396 | Subsets of Visceral Adipose Tissue Nuclei with Distinct Levels of 5-Hydroxymethylcytosine. |
Q34490684 | Transcription factor co-occupied regions in the murine genome constitute T-helper-cell subtype-specific enhancers. |
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