| scholarly article | Q13442814 |
| P50 | author | Eric Van Nostrand | Q79781519 |
| P2093 | author name string | Stuart K Kim | |
| P2860 | cites work | Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors | Q21183997 |
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| Alternative splicing of mouse transcription factors affects their DNA-binding domain architecture and is tissue specific | Q24809439 | ||
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| Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response | Q27348311 | ||
| WebLogo: A Sequence Logo Generator | Q27860646 | ||
| Systematic functional analysis of the Caenorhabditis elegans genome using RNAi | Q27860839 | ||
| Genome-wide location and function of DNA binding proteins | Q28131765 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| A statistical framework for modeling gene expression using chromatin features and application to modENCODE datasets | Q28305422 | ||
| The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells | Q28593119 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| Assessing the accuracy of prediction algorithms for classification: an overview | Q29615358 | ||
| Architecture of the human regulatory network derived from ENCODE data | Q29617046 | ||
| Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
| Direct inhibition of the longevity-promoting factor SKN-1 by insulin-like signaling in C. elegans | Q29619580 | ||
| Understanding transcriptional regulation by integrative analysis of transcription factor binding data. | Q30562517 | ||
| Lifespan regulation by evolutionarily conserved genes essential for viability | Q33281293 | ||
| ChEA: transcription factor regulation inferred from integrating genome-wide ChIP-X experiments | Q33658206 | ||
| Variable pathogenicity determines individual lifespan in Caenorhabditis elegans | Q33886588 | ||
| Genetic analysis of tissue aging in Caenorhabditis elegans: a role for heat-shock factor and bacterial proliferation. | Q34140720 | ||
| Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans | Q34148035 | ||
| Identifying a Transcription Factor's Regulatory Targets from its Binding Targets | Q34485370 | ||
| Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans | Q34611226 | ||
| Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans | Q34625961 | ||
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
| A conserved role for a GATA transcription factor in regulating epithelial innate immune responses | Q35080455 | ||
| Defining the transcriptional redundancy of early bodywall muscle development in C. elegans: evidence for a unified theory of animal muscle development | Q35221163 | ||
| A cis-regulatory map of the Drosophila genome. | Q35229726 | ||
| Insight into transcription factor gene duplication from Caenorhabditis elegans Promoterome-driven expression patterns. | Q35616802 | ||
| Enhancer and promoter interactions-long distance calls | Q35928743 | ||
| Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks | Q36093899 | ||
| Transcription factor redundancy and tissue-specific regulation: evidence from functional and physical network connectivity | Q36285399 | ||
| Chromosomal clustering and GATA transcriptional regulation of intestine-expressed genes in C. elegans | Q36480375 | ||
| Cell-specific microarray profiling experiments reveal a comprehensive picture of gene expression in the C. elegans nervous system | Q36570593 | ||
| The embryonic muscle transcriptome of Caenorhabditis elegans | Q36643272 | ||
| Increased age reduces DAF-16 and SKN-1 signaling and the hormetic response of Caenorhabditis elegans to the xenobiotic juglone | Q37188636 | ||
| Caudal-like PAL-1 directly activates the bodywall muscle module regulator hlh-1 in C. elegans to initiate the embryonic muscle gene regulatory network | Q37204828 | ||
| Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions | Q37309445 | ||
| Two Hox cofactors, the Meis/Hth homolog UNC-62 and the Pbx/Exd homolog CEH-20, function together during C. elegans postembryonic mesodermal development | Q37366658 | ||
| Oxidative stress and longevity in Caenorhabditis elegans as mediated by SKN-1. | Q37387918 | ||
| Animal transcription networks as highly connected, quantitative continua | Q37947741 | ||
| Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
| A genome-scale resource for in vivo tag-based protein function exploration in C. elegans | Q38655263 | ||
| Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors | Q39283917 | ||
| SKN-1 links C. elegans mesendodermal specification to a conserved oxidative stress response | Q39896060 | ||
| RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets | Q41576923 | ||
| HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature | Q41766976 | ||
| An elt-3/elt-5/elt-6 GATA transcription circuit guides aging in C. elegans | Q41860377 | ||
| A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals | Q42020759 | ||
| Transcriptional upregulation of the C. elegans Hox gene lin-39 during vulval cell fate specification | Q42166173 | ||
| Cscan: finding common regulators of a set of genes by using a collection of genome-wide ChIP-seq datasets | Q42232920 | ||
| A spatial and temporal map of C. elegans gene expression | Q42588671 | ||
| Restriction of mesendoderm to a single blastomere by the combined action of SKN-1 and a GSK-3beta homolog is mediated by MED-1 and -2 in C. elegans | Q46047227 | ||
| The roles of two C. elegans HOX co-factor orthologs in cell migration and vulva development | Q46497333 | ||
| A fasting-responsive signaling pathway that extends life span in C. elegans | Q46632783 | ||
| skn-1, a maternally expressed gene required to specify the fate of ventral blastomeres in the early C. elegans embryo | Q47068766 | ||
| Trithorax, Hox, and TALE-class homeodomain proteins ensure cell survival through repression of the BH3-only gene egl-1. | Q47068976 | ||
| Identification of thermosensory and olfactory neuron-specific genes via expression profiling of single neuron types | Q47069405 | ||
| Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 in C. elegans embryogenesis. | Q47069472 | ||
| The myogenic potency of HLH-1 reveals wide-spread developmental plasticity in early C. elegans embryos. | Q52054945 | ||
| Expression and function of members of a divergent nuclear receptor family in Caenorhabditis elegans. | Q52173451 | ||
| Identification of genes expressed in C. elegans touch receptor neurons | Q59097360 | ||
| P433 | issue | 6 | |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
| P304 | page(s) | 941-953 | |
| P577 | publication date | 2013-03-26 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions | |
| P478 | volume | 23 |
| Q33717032 | A fast, efficient chromatin immunoprecipitation method for studying protein-DNA binding in Arabidopsis mesophyll protoplasts |
| Q38303263 | A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. |
| Q94554291 | A novel functional cross-interaction between opioid and pheromone signaling may be involved in stress avoidance in Caenorhabditis elegans |
| Q35882855 | ChIP-Seq: Library Preparation and Sequencing |
| Q33746443 | Cooperation between a hierarchical set of recruitment sites targets the X chromosome for dosage compensation |
| Q27308993 | Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans |
| Q34350059 | Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction |
| Q33577722 | Dynamic regulation of genetic pathways and targets during aging in Caenorhabditis elegans |
| Q37343806 | E2F coregulates an essential HSF developmental program that is distinct from the heat-shock response |
| Q90504395 | GLP-1 Notch-LAG-1 CSL control of the germline stem cell fate is mediated by transcriptional targets lst-1 and sygl-1 |
| Q35136984 | Identification and characterization of alternative splicing in parasitic nematode transcriptomes |
| Q36410041 | Inhibition of elongin C promotes longevity and protein homeostasis via HIF-1 in C. elegans |
| Q30699803 | MMDiff: quantitative testing for shape changes in ChIP-Seq data sets |
| Q42696593 | NetProphet 2.0: Mapping Transcription Factor Networks by Exploiting Scalable Data Resources. |
| Q27309712 | Reproductive Aging Drives Protein Accumulation in the Uterus and Limits Lifespan in C. elegans |
| Q35871542 | The Inflammatory Transcription Factors NFκB, STAT1 and STAT3 Drive Age-Associated Transcriptional Changes in the Human Kidney |
| Q92794696 | WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans |
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