| scholarly article | Q13442814 |
| P50 | author | Mark Bender Gerstein | Q6766711 |
| Hugo J. Bellen | Q22003355 | ||
| Robert Lee Grossman | Q24248214 | ||
| Steven W Miller | Q64979641 | ||
| Jennifer Zieba | Q89693975 | ||
| Parantu K Shah | Q114340057 | ||
| A Jason Grundstad | Q114340528 | ||
| Carolyn A Morrison | Q116997102 | ||
| Rebecca F Spokony | Q116997103 | ||
| Sarah Suchy | Q116997105 | ||
| Alec Victorsen | Q116997106 | ||
| Manolis Kellis | Q28050827 | ||
| Mattias Mannervik | Q38549090 | ||
| Steven Russell | Q42277880 | ||
| Nicolas Nègre | Q42745762 | ||
| Koen Venken | Q58812020 | ||
| Pouya Kheradpour | Q64871734 | ||
| P2093 | author name string | Chao Cheng | |
| Lijia Ma | |||
| Bing Ren | |||
| Kevin P White | |||
| Zirong Li | |||
| Jia Chen | |||
| David M MacAlpine | |||
| Matthew L Eaton | |||
| James W Posakony | |||
| Melissa B Davis | |||
| Christopher D Brown | |||
| Robert White | |||
| Ulrich Wagner | |||
| Rachel Sealfon | |||
| Lindsay Hwang | |||
| Lionel Senderowicz | |||
| Haruhiko Ishii | |||
| Paul Loriaux | |||
| Richard P Auburn | |||
| David Hanley | |||
| Marc Domanus | |||
| Christopher Aaron Bristow | |||
| Nicholas A Bild | |||
| P2860 | cites work | Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm | Q21563555 |
| Central role of Drosophila SU(VAR)3-9 in histone H3-K9 methylation and heterochromatic gene silencing | Q24536235 | ||
| RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo | Q24645367 | ||
| Genome-wide location and function of DNA binding proteins | Q28131765 | ||
| Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Q28131828 | ||
| ChIP-seq accurately predicts tissue-specific activity of enhancers | Q28235102 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| Genome regulation by polycomb and trithorax proteins | Q28289984 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Genome-wide mapping of in vivo protein-DNA interactions | Q29547162 | ||
| Drosophila brakeless interacts with atrophin and is required for tailless-mediated transcriptional repression in early embryos | Q33284704 | ||
| Stability and dynamics of polycomb target sites in Drosophila development. | Q33367118 | ||
| Versatile P[acman] BAC libraries for transgenesis studies in Drosophila melanogaster | Q33451657 | ||
| A comprehensive map of insulator elements for the Drosophila genome | Q33525010 | ||
| Senseless, a Zn finger transcription factor, is necessary and sufficient for sensory organ development in Drosophila | Q33916848 | ||
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells | Q34141226 | ||
| Genome-wide analysis of promoter architecture in Drosophila melanogaster. | Q34548248 | ||
| Metamorphosis of the central nervous system of Drosophila | Q34659169 | ||
| Combinatorial binding predicts spatio-temporal cis-regulatory activity | Q35011328 | ||
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
| The emerging functions of histone demethylases | Q37087004 | ||
| Differential chromatin marking of introns and expressed exons by H3K36me3. | Q37111430 | ||
| Genome-wide profiling of salt fractions maps physical properties of chromatin | Q37142037 | ||
| Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions | Q37309445 | ||
| Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites. | Q41954417 | ||
| SNR1 is an essential subunit in a subset of Drosophila brm complexes, targeting specific functions during development | Q48025730 | ||
| Direct integration of Hox and segmentation gene inputs during Drosophila development. | Q52086921 | ||
| Activation of posterior gap gene expression in the Drosophila blastoderm. | Q52207140 | ||
| P433 | issue | 7339 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Drosophila | Q312154 |
| P304 | page(s) | 527-531 | |
| P577 | publication date | 2011-03-01 | |
| P1433 | published in | Nature | Q180445 |
| P1476 | title | A cis-regulatory map of the Drosophila genome | |
| P478 | volume | 471 |
| Q92884554 | A Cut/cohesin axis alters the chromatin landscape to facilitate neuroblast death |
| Q37163070 | A Genetic Mosaic Screen Reveals Ecdysone-Responsive Genes Regulating Drosophila Oogenesis |
| Q33860440 | A cell cycle-independent, conditional gene inactivation strategy for differentially tagging wild-type and mutant cells. |
| Q34315688 | A chromatin link to caste identity in the carpenter ant Camponotus floridanus |
| Q28661061 | A common set of DNA regulatory elements shapes Drosophila appendages |
| Q38303263 | A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. |
| Q41333816 | A graphical modelling approach to the dissection of highly correlated transcription factor binding site profiles |
| Q34109795 | A high-resolution whole-genome map of key chromatin modifications in the adult Drosophila melanogaster |
| Q42020759 | A high-throughput chromatin immunoprecipitation approach reveals principles of dynamic gene regulation in mammals |
| Q35536556 | A hyper-dynamic nature of bivalent promoter states underlies coordinated developmental gene expression modules |
| Q35238267 | A large-scale, in vivo transcription factor screen defines bivalent chromatin as a key property of regulatory factors mediating Drosophila wing development |
| Q34469395 | A library of MiMICs allows tagging of genes and reversible, spatial and temporal knockdown of proteins in Drosophila |
| Q34192877 | A machine learning approach for identifying novel cell type-specific transcriptional regulators of myogenesis |
| Q37551772 | A novel role for the 3'-5' exoribonuclease Dis3L2 in controlling cell proliferation and tissue growth |
| Q36869955 | A positive role for polycomb in transcriptional regulation via H4K20me1. |
| Q37107582 | A selective sweep across species boundaries in Drosophila. |
| Q35230885 | A set of structural features defines the cis-regulatory modules of antenna-expressed genes in Drosophila melanogaster |
| Q36613972 | A subset of Drosophila Myc sites remain associated with mitotic chromosomes colocalized with insulator proteins |
| Q41791001 | A synthetic biology approach to the development of transcriptional regulatory models and custom enhancer design |
| Q38534547 | A time of change: Dynamics of chromatin and transcriptional regulation during nuclear programming in early Drosophila development |
| Q34111752 | Absence of a simple code: how transcription factors read the genome |
| Q36223102 | Absence of canonical marks of active chromatin in developmentally regulated genes |
| Q30404787 | Active promoters give rise to false positive 'Phantom Peaks' in ChIP-seq experiments. |
| Q42560139 | Active transcription without histone modifications |
| Q50799519 | Akt is negatively regulated by Hippo signaling for growth inhibition in Drosophila. |
| Q37747079 | Alcohol-Induced Neuroadaptation Is Orchestrated by the Histone Acetyltransferase CBP |
| Q41322926 | An embryonic system to assess direct and indirect Wnt transcriptional targets |
| Q56395821 | An expanded toolkit for gene tagging based on MiMIC and scarless CRISPR tagging in |
| Q37734422 | An improved predictive recognition model for Cys(2)-His(2) zinc finger proteins |
| Q36119908 | An integrated regulatory network reveals pervasive cross-regulation among transcription and splicing factors |
| Q35086669 | An integrative analysis of TFBS-clustered regions reveals new transcriptional regulation models on the accessible chromatin landscape |
| Q35856682 | An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. |
| Q21061190 | Analysis of variation at transcription factor binding sites in Drosophila and humans |
| Q37228819 | Architectural proteins Pita, Zw5,and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila |
| Q36816531 | Beyond antioxidant genes in the ancient Nrf2 regulatory network. |
| Q36638578 | Bilaterian-like promoters in the highly compact Amphimedon queenslandica genome |
| Q47620096 | CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II. |
| Q34507907 | CBS: an open platform that integrates predictive methods and epigenetics information to characterize conserved regulatory features in multiple Drosophila genomes |
| Q37631835 | CCAT: Combinatorial Code Analysis Tool for transcriptional regulation |
| Q36596478 | Captured segment exchange: a strategy for custom engineering large genomic regions in Drosophila melanogaster |
| Q35101555 | Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data |
| Q37077899 | Cellular resolution models for even skipped regulation in the entire Drosophila embryo |
| Q48139993 | Centrosomin represses dendrite branching by orienting microtubule nucleation |
| Q51083207 | ChIP-seq for the Identification of Functional Elements in the Human Genome. |
| Q30000291 | ChIPBase v2.0: decoding transcriptional regulatory networks of non-coding RNAs and protein-coding genes from ChIP-seq data |
| Q30577864 | ChIPBase: a database for decoding the transcriptional regulation of long non-coding RNA and microRNA genes from ChIP-Seq data |
| Q93073871 | Changes in chromatin accessibility ensure robust cell cycle exit in terminally differentiated cells |
| Q33771757 | Chemical mutagens, transposons, and transgenes to interrogate gene function in Drosophila melanogaster |
| Q56810631 | ChromTime: modeling spatio-temporal dynamics of chromatin marks |
| Q27640577 | Chromatin Insulator Factors Involved in Long-Range DNA Interactions and Their Role in the Folding of the Drosophila Genome |
| Q60919328 | Chromatin changes in Anopheles gambiae induced by Plasmodium falciparum infection |
| Q36044832 | Chromatin domain boundary element search tool for Drosophila |
| Q37983891 | Chromatin insulator elements: establishing barriers to set heterochromatin boundaries |
| Q38161276 | Chromatin insulators and long-distance interactions in Drosophila |
| Q42352275 | Chromatin signature discovery via histone modification profile alignments. |
| Q38725419 | Cis- and Trans-regulatory Effects on Gene Expression in a Natural Population of Drosophila melanogaster |
| Q90261197 | Cis-Regulatory Code for Predicting Plant Cell-Type Transcriptional Response to High Salinity |
| Q39346590 | Classification of Promoters Based on the Combination of Core Promoter Elements Exhibits Different Histone Modification Patterns. |
| Q33751432 | Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes |
| Q28589026 | Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules |
| Q38485000 | Collaborative regulation of development but independent control of metabolism by two epidermis-specific transcription factors in Caenorhabditis elegans |
| Q28594222 | Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family |
| Q47249202 | Comparative Genomics in Drosophila |
| Q34435561 | Comparative analysis of regulatory information and circuits across distant species |
| Q30834511 | Comparative validation of the D. melanogaster modENCODE transcriptome annotation. |
| Q41627089 | Complex cis-regulatory landscape of the insulin receptor gene underlies the broad expression of a central signaling regulator. |
| Q38367824 | Computational methodology for ChIP-seq analysis |
| Q55278602 | Conserved Noncoding Elements Influence the Transposable Element Landscape in Drosophila. |
| Q38155311 | Control of Drosophila embryo patterning by transcriptional co-regulators. |
| Q47448307 | Control of nerve cord formation by Engrailed and Gooseberry-Neuro: A multi-step, coordinated process. |
| Q41861562 | Coordinate redeployment of PRC1 proteins suppresses tumor formation during Drosophila development |
| Q35668888 | DELTA: A Distal Enhancer Locating Tool Based on AdaBoost Algorithm and Shape Features of Chromatin Modifications |
| Q55092265 | DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP. |
| Q35569780 | DNA methylation and chromatin organization in insects: insights from the Ant Camponotus floridanus |
| Q36160604 | DNA sequence templates adjacent nucleosome and ORC sites at gene amplification origins in Drosophila |
| Q55491443 | DamID profiling of dynamic Polycomb-binding sites in Drosophila imaginal disc development and tumorigenesis. |
| Q60309640 | Damage-responsive elements in regeneration |
| Q34695037 | De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets |
| Q34636525 | Deciphering miRNA transcription factor feed-forward loops to identify drug repurposing candidates for cystic fibrosis |
| Q35896285 | Developmental enhancers are marked independently of zygotic Nodal signals in Xenopus |
| Q37669961 | Different modes of enhancer-specific regulation by Runt and Even-skipped during Drosophila segmentation |
| Q30692715 | Discover context-specific combinatorial transcription factor interactions by integrating diverse ChIP-Seq data sets |
| Q38529152 | Discovering enhancers by mapping chromatin features in primary tissue |
| Q26865492 | Disentangling the many layers of eukaryotic transcriptional regulation |
| Q93334853 | Disparate expression specificities coded by a shared Hox-C enhancer |
| Q34026313 | Dissecting the transcriptional regulatory properties of human chromosome 16 highly conserved non-coding regions |
| Q36677303 | Distinct Roles of Chromatin Insulator Proteins in Control of the Drosophila Bithorax Complex |
| Q34988041 | Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. |
| Q33839459 | Diverse patterns of genomic targeting by transcriptional regulators in Drosophila melanogaster |
| Q47292080 | Dosage-Dependent Expression Variation Suppressed on the Drosophila Male X Chromosome |
| Q36354873 | Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains |
| Q34764038 | Drosophila functional elements are embedded in structurally constrained sequences |
| Q34301719 | Dynamic epigenetic control of highly conserved noncoding elements |
| Q47844892 | Dynamic genome wide expression profiling of Drosophila head development reveals a novel role of Hunchback in retinal glia cell development and blood-brain barrier integrity. |
| Q39657214 | Dynamic regulation of histone H3K9 is linked to the switch between replication and transcription at the Dbf4 origin-promoter locus |
| Q42121025 | ELAV links paused Pol II to alternative polyadenylation in the Drosophila nervous system. |
| Q34825042 | Effective blocking of the white enhancer requires cooperation between two main mechanisms suggested for the insulator function |
| Q35996008 | Engrailed cooperates directly with Extradenticle and Homothorax on a distinct class of homeodomain binding sites to repress sloppy paired |
| Q47897565 | Enhanced dissection of the regulatory genome |
| Q42263744 | Enhancer diversity and the control of a simple pattern of Drosophila CNS midline cell expression |
| Q50647626 | Enhancer loops appear stable during development and are associated with paused polymerase. |
| Q26861197 | Enhancer malfunction in cancer |
| Q34266848 | Enhancers as information integration hubs in development: lessons from genomics. |
| Q26830614 | Epigenetic inheritance: a contributor to species differentiation? |
| Q35906087 | Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states |
| Q50059984 | Epigenomic and genomic landscape of Drosophila melanogaster heterochromatic genes |
| Q110951440 | Episodes of Rapid Recovery of the Functional Activity of the ras85D Gene in the Evolutionary History of Phylogenetically Distant Drosophila Species |
| Q35173164 | Establishment of regions of genomic activity during the Drosophila maternal to zygotic transition |
| Q38365224 | Eukaryotic enhancers: common features, regulation, and participation in diseases |
| Q45900284 | Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs. |
| Q49859624 | Evidence for a hierarchical transcriptional circuit in Drosophila male germline involving testis-specific TAF and two gene-specific transcription factors, Mod and Acj6. |
| Q33839416 | Evolution of H3K27me3-marked chromatin is linked to gene expression evolution and to patterns of gene duplication and diversification |
| Q36032955 | Evolutionary conservation of histone modifications in mammals |
| Q37683468 | Evolutionary conservation of the eumetazoan gene regulatory landscape |
| Q36363430 | Exploring spatially adjacent TFBS-clustered regions with Hi-C data |
| Q34343663 | Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data |
| Q34270920 | Extensive transcriptional regulation of chromatin modifiers during human neurodevelopment |
| Q42209149 | Extreme HOT regions are CpG-dense promoters in C. elegans and humans |
| Q35563825 | Eye selector logic for a coordinated cell cycle exit. |
| Q35631039 | FlyBase 101--the basics of navigating FlyBase |
| Q35244063 | Frequent recent origination of brain genes shaped the evolution of foraging behavior in Drosophila |
| Q35784256 | Functional annotation of HOT regions in the human genome: implications for human disease and cancer. |
| Q37129691 | GAGA factor, a positive regulator of global gene expression, modulates transcriptional pausing and organization of upstream nucleosomes |
| Q46431518 | GRID-seq reveals the global RNA-chromatin interactome. |
| Q42371057 | Gene Tagging Strategies To Assess Protein Expression, Localization, and Function in Drosophila. |
| Q91619703 | Gene activation by dCas9-CBP and the SAM system differ in target preference |
| Q36198219 | Gene-expression changes caused by inbreeding protect against inbreeding depression in Drosophila |
| Q38913659 | Genome distribution of replication-independent histone H1 variants shows H1.0 associated with nucleolar domains and H1X associated with RNA polymerase II-enriched regions |
| Q34331255 | Genome organization and long-range regulation of gene expression by enhancers |
| Q35708538 | Genome-Wide Mapping of Collier In Vivo Binding Sites Highlights Its Hierarchical Position in Different Transcription Regulatory Networks. |
| Q40594631 | Genome-wide analyses of Shavenbaby target genes reveals distinct features of enhancer organization. |
| Q39130339 | Genome-wide chemical mapping of O-GlcNAcylated proteins in Drosophila melanogaster |
| Q35989390 | Genome-wide errant targeting by Hairy |
| Q36134892 | Genome-wide identification and characterisation of HOT regions in the human genome. |
| Q37286069 | Genome-wide identification of Drosophila dorso-ventral enhancers by differential histone acetylation analysis. |
| Q34590382 | Genome-wide map of regulatory interactions in the human genome |
| Q34994228 | Genome-wide mapping of matrix attachment regions in Drosophila melanogaster |
| Q40967119 | Genome-wide search for Zelda-like chromatin signatures identifies GAF as a pioneer factor in early fly development. |
| Q35922815 | Genome-wide studies reveal novel and distinct biological pathways regulated by SIN3 isoforms. |
| Q42745731 | Genomic data integration for ecological and evolutionary traits in non-model organisms |
| Q38058189 | Genomic occupancy of the transcriptional co-activators p300 and CBP. |
| Q26786615 | Getting Down to Specifics: Profiling Gene Expression and Protein-DNA Interactions in a Cell Type-Specific Manner |
| Q34614125 | Global analysis of Drosophila Cys₂-His₂ zinc finger proteins reveals a multitude of novel recognition motifs and binding determinants |
| Q36165327 | Global chromatin state analysis reveals lineage-specific enhancers during the initiation of human T helper 1 and T helper 2 cell polarization |
| Q36328467 | Groucho restricts rhomboid expression and couples EGFR activation with R8 selection during Drosophila photoreceptor differentiation |
| Q34069772 | H3K27 modifications define segmental regulatory domains in the Drosophila bithorax complex |
| Q91973493 | HIPP1 stabilizes the interaction between CP190 and Su(Hw) in the Drosophila insulator complex |
| Q42085279 | HOT DNAs: a novel class of developmental enhancers |
| Q41766976 | HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature |
| Q34296849 | High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression |
| Q38963694 | Highly conserved ENY2/Sus1 protein binds to Drosophila CTCF and is required for barrier activity |
| Q44031180 | Hox transcriptional specificity despite a single class of cofactors: are flexible interaction modes the key? Plasticity in Hox/PBC interaction modes as a common molecular strategy for shaping Hox transcriptional activities |
| Q36325007 | Identification of Candidate Functional Elements in the Genome from ChIP-seq Data |
| Q35806459 | Identification of Predictive Cis-Regulatory Elements Using a Discriminative Objective Function and a Dynamic Search Space. |
| Q26787215 | Identification of the Drosophila X chromosome: The long and short of it |
| Q34536871 | Identifying targets of the Sox domain protein Dichaete in the Drosophila CNS via targeted expression of dominant negative proteins |
| Q35117066 | Identifying transcriptional cis-regulatory modules in animal genomes. |
| Q35791237 | Impact of chromatin structure on PR signaling: transition from local to global analysis |
| Q34048842 | Insights into the epigenomic landscape of the human malaria vector Anopheles gambiae |
| Q34485099 | Insulator function and topological domain border strength scale with architectural protein occupancy |
| Q26775263 | Insulators and domains of gene expression |
| Q30912655 | Integrating motif, DNA accessibility and gene expression data to build regulatory maps in an organism |
| Q34518118 | Integration of Orthogonal Signaling by the Notch and Dpp Pathways in Drosophila |
| Q30607520 | Integrative analysis of C. elegans modENCODE ChIP-seq data sets to infer gene regulatory interactions. |
| Q35130969 | Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape |
| Q34489479 | Integrative analysis of the zinc finger transcription factor Lame duck in the Drosophila myogenic gene regulatory network |
| Q99574662 | Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo |
| Q47758021 | Interactions between BTB domain of CP190 and two adjacent regions in Su(Hw) are required for the insulator complex formation. |
| Q28680737 | Interplay between chromatin state, regulator binding, and regulatory motifs in six human cell types |
| Q27313416 | Interplay of dFOXO and two ETS-family transcription factors determines lifespan in Drosophila melanogaster |
| Q36281809 | Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster |
| Q47336653 | Investigate Global Chromosomal Interaction by Hi-C in Human Naive CD4 T Cells |
| Q33675663 | Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. |
| Q90386322 | Learning causal networks using inducible transcription factors and transcriptome-wide time series |
| Q89176327 | Loci-specific histone acetylation profiles associated with transcriptional coactivator p300 during early myoblast differentiation |
| Q92296143 | MAPCap allows high-resolution detection and differential expression analysis of transcription start sites |
| Q21184004 | MAnorm: a robust model for quantitative comparison of ChIP-Seq data sets |
| Q35185318 | Making connections: insulators organize eukaryotic chromosomes into independent cis-regulatory networks |
| Q46558029 | Mapping genome-wide transcription-factor binding sites using DAP-seq. |
| Q36293078 | Mechanisms of Groucho-mediated repression revealed by genome-wide analysis of Groucho binding and activity |
| Q90407768 | Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions |
| Q34222706 | MiMIC: a highly versatile transposon insertion resource for engineering Drosophila melanogaster genes |
| Q43984796 | Molecular biology: A fly in the face of genomics |
| Q33784387 | Molecular hyperdiversity and evolution in very large populations |
| Q33860830 | Motif enrichment tool |
| Q47160441 | Multiple interactions are involved in a highly specific association of the Mod(mdg4)-67.2 isoform with the Su(Hw) sites in Drosophila. |
| Q38042890 | Multiple layers of complexity in cis-regulatory regions of developmental genes |
| Q35613455 | Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism |
| Q36354877 | Nature and function of insulator protein binding sites in the Drosophila genome. |
| Q30779594 | Navigating and mining modENCODE data |
| Q34701947 | New properties of Drosophila scs and scs' insulators |
| Q48224361 | Non-specificity of transcription factor function in Drosophila melanogaster. |
| Q35748969 | Nonconsensus Protein Binding to Repetitive DNA Sequence Elements Significantly Affects Eukaryotic Genomes |
| Q42110668 | Nonspecific protein-DNA binding is widespread in the yeast genome |
| Q33884842 | Nuclear receptors connect progenitor transcription factors to cell cycle control. |
| Q34356274 | One Hand Clapping: detection of condition-specific transcription factor interactions from genome-wide gene activity data |
| Q47129959 | Opbp is a new architectural/insulator protein required for ribosomal gene expression. |
| Q39018235 | Origin and evolution of the metazoan non-coding regulatory genome |
| Q38040346 | Packaging the fly genome: domains and dynamics |
| Q36754746 | Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects |
| Q40984243 | Pervasive epigenetic effects of Drosophila euchromatic transposable elements impact their evolution. |
| Q58227153 | Phenotypically distinct female castes in honey bees are defined by alternative chromatin states during larval development |
| Q30915238 | Pitfalls of mapping high-throughput sequencing data to repetitive sequences: Piwi's genomic targets still not identified. |
| Q41613292 | Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviors. |
| Q36642242 | PolyCat: a resource for genome categorization of sequencing reads from allopolyploid organisms |
| Q37294202 | Positive and negative design for nonconsensus protein-DNA binding affinity in the vicinity of functional binding sites |
| Q36093899 | Predictive regulatory models in Drosophila melanogaster by integrative inference of transcriptional networks |
| Q34318258 | Preferential genome targeting of the CBP co-activator by Rel and Smad proteins in early Drosophila melanogaster embryos |
| Q34661144 | Protein-DNA binding in the absence of specific base-pair recognition |
| Q35113491 | Quantitative modeling of a gene's expression from its intergenic sequence. |
| Q33578947 | RNAi screen in Drosophila larvae identifies histone deacetylase 3 as a positive regulator of the hsp70 heat shock gene expression during heat shock |
| Q34954489 | Recombinant antibodies to histone post-translational modifications |
| Q50448934 | Recombination rate plasticity: revealing mechanisms by design |
| Q37883698 | Reconstructing regulatory network transitions |
| Q36762686 | Regional control of histone H3 lysine 27 methylation in Neurospora |
| Q40641364 | Regulation of a duplicated locus: Drosophila sloppy paired is replete with functionally overlapping enhancers |
| Q36199609 | Regulation of alternative splicing in Drosophila by 56 RNA binding proteins |
| Q37655069 | Regulation of gene expression in the genomic context |
| Q42429601 | Regulatory analysis of the C. elegans genome with spatiotemporal resolution |
| Q36049555 | Reshaping of global gene expression networks and sex-biased gene expression by integration of a young gene |
| Q36000831 | Robust intestinal homeostasis relies on cellular plasticity in enteroblasts mediated by miR-8-Escargot switch |
| Q37230309 | Roles of chromatin insulator proteins in higher-order chromatin organization and transcription regulation |
| Q38884770 | Sex combs reduced (Scr) regulatory region of Drosophila revisited |
| Q34767750 | Sex- and tissue-specific functions of Drosophila doublesex transcription factor target genes |
| Q39298013 | Sin3a acts through a multi-gene module to regulate invasion in Drosophila and human tumors |
| Q47129420 | Software for rapid time dependent ChIP-sequencing analysis (TDCA). |
| Q41328427 | SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete |
| Q33741892 | Spatial expression of transcription factors in Drosophila embryonic organ development |
| Q90950275 | Structural variants exhibit widespread allelic heterogeneity and shape variation in complex traits |
| Q42021558 | Subtype-specific neuronal remodeling during Drosophila metamorphosis |
| Q34241267 | Systematic evaluation of factors influencing ChIP-seq fidelity |
| Q47260442 | TAD-free analysis of architectural proteins and insulators. |
| Q35997321 | TEMPLE: analysing population genetic variation at transcription factor binding sites |
| Q34145702 | Tempo and mode in evolution of transcriptional regulation |
| Q36354881 | The BEAF-32 insulator coordinates genome organization and function during the evolution of Drosophila species |
| Q37620996 | The Brm-HDAC3-Erm repressor complex suppresses dedifferentiation in Drosophila type II neuroblast lineages |
| Q90239343 | The Dm-Myb Oncoprotein Contributes to Insulator Function and Stabilizes Repressive H3K27me3 PcG Domains |
| Q35034322 | The Drosophila eve insulator Homie promotes eve expression and protects the adjacent gene from repression by polycomb spreading |
| Q30361905 | The Drosophila speciation factor HMR localizes to genomic insulator sites. |
| Q57898920 | The Function of DNA Methylation Marks in Social Insects |
| Q35233511 | The Groucho co-repressor is primarily recruited to local target sites in active chromatin to attenuate transcription |
| Q40206242 | The Histone Demethylase KDM5 Activates Gene Expression by Recognizing Chromatin Context through Its PHD Reader Motif |
| Q42733384 | The Little Fly that Could: Wizardry and Artistry of Drosophila Genomics. |
| Q35652808 | The Role of piRNA-Mediated Epigenetic Silencing in the Population Dynamics of Transposable Elements in Drosophila melanogaster |
| Q42560558 | The TAGteam motif facilitates binding of 21 sequence-specific transcription factors in the Drosophila embryo |
| Q38323419 | The Tbx20 homolog Midline represses wingless in conjunction with Groucho during the maintenance of segment polarity |
| Q39945896 | The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification |
| Q35126171 | The bHLH factors extramacrochaetae and daughterless control cell cycle in Drosophila imaginal discs through the transcriptional regulation of the Cdc25 phosphatase string. |
| Q36580995 | The comprehensive epigenome map of piRNA clusters |
| Q90742985 | The conserved regulatory basis of mRNA contributions to the early Drosophila embryo differs between the maternal and zygotic genomes |
| Q35095539 | The evolutionary panorama of organ-specifically expressed or repressed orthologous genes in nine vertebrate species |
| Q50753040 | The function of intragenic DNA methylation: insights from insect epigenomes. |
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