| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/NATURE13497 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1038/nature13497 |
| P932 | PMC publication ID | 4530805 |
| P698 | PubMed publication ID | 25164749 |
| P5875 | ResearchGate publication ID | 265134048 |
| P50 | author | Carlos L Araya | Q40068060 |
| Alan P. Boyle | Q42429614 | ||
| Anshul Kundaje | Q51417778 | ||
| Valerie Reinke | Q57338308 | ||
| Michael P. Snyder | Q28924918 | ||
| P2093 | author name string | Lijia Ma | |
| John I Murray | |||
| Robert H Waterston | |||
| Wei Niu | |||
| Beijing Wu | |||
| Dan Xie | |||
| Trupti Kawli | |||
| Daniel Mace | |||
| Dionne Vafeados | |||
| Lixia Jiang | |||
| Louis Gevirtzman | |||
| Peter Weissdepp | |||
| Robert Terrell | |||
| P2860 | cites work | Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors | Q21183997 |
| Highly expressed loci are vulnerable to misleading ChIP localization of multiple unrelated proteins | Q37319659 | ||
| Emerging properties of animal gene regulatory networks | Q37821745 | ||
| Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
| PRDM1/Blimp-1 controls effector cytokine production in human NK cells | Q38340188 | ||
| RNA Pol II accumulates at promoters of growth genes during developmental arrest. | Q38435681 | ||
| A genome-scale resource for in vivo tag-based protein function exploration in C. elegans | Q38655263 | ||
| Dynamic trans-acting factor colocalization in human cells | Q39062198 | ||
| Multidimensional regulation of gene expression in the C. elegans embryo | Q39628462 | ||
| A high-fidelity cell lineage tracing method for obtaining systematic spatiotemporal gene expression patterns in Caenorhabditis elegans | Q40789186 | ||
| The C. elegans NeuroD homolog cnd-1 functions in multiple aspects of motor neuron fate specification. | Q41759994 | ||
| An effective statistical evaluation of ChIPseq dataset similarity | Q42140243 | ||
| The forkhead gene family of Caenorhabditis elegans | Q47068827 | ||
| An essential role in molting and morphogenesis of Caenorhabditis elegans for ACN-1, a novel member of the angiotensin-converting enzyme family that lacks a metallopeptidase active site | Q47069029 | ||
| MEP-1 and a homolog of the NURD complex component Mi-2 act together to maintain germline-soma distinctions in C. elegans | Q47069337 | ||
| Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 in C. elegans embryogenesis. | Q47069472 | ||
| A C. elegans Hox gene switches on, off, on and off again to regulate proliferation, differentiation and morphogenesis. | Q47069541 | ||
| NXF-2, REF-1, and REF-2 affect the choice of nuclear export pathway for tra-2 mRNA in C. elegans | Q47401595 | ||
| Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation. | Q54294539 | ||
| The C. elegans Hand gene controls embryogenesis and early gonadogenesis | Q73413292 | ||
| The genetics of Caenorhabditis elegans | Q24533408 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| Genome-wide identification of binding sites defines distinct functions for Caenorhabditis elegans PHA-4/FOXA in development and environmental response | Q27348311 | ||
| Quantifying similarity between motifs | Q27499384 | ||
| Blimp1 is a critical determinant of the germ cell lineage in mice | Q28254768 | ||
| The embryonic cell lineage of the nematode Caenorhabditis elegans | Q28271877 | ||
| ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia | Q28274448 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Mutations in DMRT3 affect locomotion in horses and spinal circuit function in mice | Q28586359 | ||
| DNA-binding specificities of human transcription factors | Q28854562 | ||
| MEME SUITE: tools for motif discovery and searching | Q29547204 | ||
| Automated cell lineage tracing in Caenorhabditis elegans | Q30477028 | ||
| Lifespan regulation by evolutionarily conserved genes essential for viability | Q33281293 | ||
| Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing | Q33401685 | ||
| ChIPpeakAnno: a Bioconductor package to annotate ChIP-seq and ChIP-chip data | Q33575507 | ||
| Unlocking the secrets of the genome | Q33745487 | ||
| Transcriptional regulation and its misregulation in disease. | Q34036033 | ||
| Six and Eya promote apoptosis through direct transcriptional activation of the proapoptotic BH3-only gene egl-1 in Caenorhabditis elegans | Q34100473 | ||
| Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution | Q34239260 | ||
| Comparative analysis of regulatory information and circuits across distant species | Q34435561 | ||
| Comparative analysis of metazoan chromatin organization | Q34486035 | ||
| A global analysis of C. elegans trans-splicing | Q34548280 | ||
| Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans | Q34611226 | ||
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
| Endoderm development in Caenorhabditis elegans: the synergistic action of ELT-2 and -7 mediates the specification→differentiation transition | Q35125443 | ||
| A cis-regulatory map of the Drosophila genome. | Q35229726 | ||
| Analysis of cell fate from single-cell gene expression profiles in C. elegans | Q36452051 | ||
| CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors | Q36635707 | ||
| Automated analysis of embryonic gene expression with cellular resolution in C. elegans. | Q36909568 | ||
| Design and analysis of ChIP-seq experiments for DNA-binding proteins | Q37003887 | ||
| Regulatory logic of neuronal diversity: terminal selector genes and selector motifs. | Q37068535 | ||
| P2507 | corrigendum / erratum | Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution | Q57325854 |
| P433 | issue | 7515 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Caenorhabditis elegans | Q91703 |
| P304 | page(s) | 400-405 | |
| P577 | publication date | 2014-08-01 | |
| P1433 | published in | Nature | Q180445 |
| P1476 | title | Regulatory analysis of the C. elegans genome with spatiotemporal resolution | |
| P478 | volume | 512 |
| Q37368943 | A gene-centered C. elegans protein-DNA interaction network provides a framework for functional predictions |
| Q36003584 | A quantitative genome-wide RNAi screen in C. elegans for antifungal innate immunity genes |
| Q89857184 | A spontaneous complex structural variant in rcan-1 increases exploratory behavior and laboratory fitness of Caenorhabditis elegans |
| Q58541925 | Chromatin accessibility dynamics across development and ageing |
| Q45943868 | Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans. |
| Q38750070 | Combinatorial decoding of the invariant C. elegans embryonic lineage in space and time |
| Q42778223 | Comparative Transcriptomics of Steinernema and Caenorhabditis Single Embryos Reveals Orthologous Gene Expression Convergence during Late Embryogenesis |
| Q34139425 | Comparative analysis of the transcriptome across distant species |
| Q36083006 | Comparative genomics of Steinernema reveals deeply conserved gene regulatory networks |
| Q38619221 | Comprehensive single-cell transcriptional profiling of a multicellular organism. |
| Q27329652 | Constructing 3D interaction maps from 1D epigenomes. |
| Q57325854 | Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution |
| Q28388147 | Dopamine signaling promotes the xenobiotic stress response and protein homeostasis |
| Q37343806 | E2F coregulates an essential HSF developmental program that is distinct from the heat-shock response |
| Q37485666 | Enhancer Sharing Promotes Neighborhoods of Transcriptional Regulation Across Eukaryotes. |
| Q30387300 | Functional and phylogenetic characterization of proteins detected in various nematode intestinal compartments |
| Q35784256 | Functional annotation of HOT regions in the human genome: implications for human disease and cancer. |
| Q36134892 | Genome-wide identification and characterisation of HOT regions in the human genome. |
| Q35765049 | Genome-wide target analysis of NEUROD2 provides new insights into regulation of cortical projection neuron migration and differentiation |
| Q50638193 | Genomics: Hiding in plain sight. |
| Q64056478 | HSP-4/BiP expression in secretory cells is regulated by a developmental program and not by the unfolded protein response |
| Q36515529 | Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations |
| Q35134202 | Important biological information uncovered in previously unaligned reads from chromatin immunoprecipitation experiments (ChIP-Seq). |
| Q36407813 | Integration of Genome-Wide TF Binding and Gene Expression Data to Characterize Gene Regulatory Networks in Plant Development |
| Q46349883 | Loss of the Caenorhabditis elegans pocket protein LIN-35 reveals MuvB's innate function as the repressor of DREAM target genes |
| Q40749005 | Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities. |
| Q90407768 | Meta Gene Regulatory Networks in Maize Highlight Functionally Relevant Regulatory Interactions |
| Q47136549 | Nanos promotes epigenetic reprograming of the germline by down-regulation of the THAP transcription factor LIN-15B. |
| Q37548517 | Nucleosome fragility is associated with future transcriptional response to developmental cues and stress in C. elegans |
| Q35939502 | Overlapping cell population expression profiling and regulatory inference in C. elegans |
| Q38858919 | Regulation of Tissue-Specific Alternative Splicing: C. elegans as a Model System |
| Q38666831 | Reverse engineering highlights potential principles of large gene regulatory network design and learning. |
| Q34497793 | Single-cell epigenomics: techniques and emerging applications |
| Q42249894 | Spatial distribution of predicted transcription factor binding sites in Drosophila ChIP peaks |
| Q47069129 | Spatiotemporal control of a novel synaptic organizer molecule |
| Q92254340 | The C. elegans embryonic transcriptome with tissue, time, and alternative splicing resolution |
| Q35588925 | The GATA factor elt-1 regulates C. elegans developmental timing by promoting expression of the let-7 family microRNAs |
| Q47372758 | The Germline-Specific Factor OEF-1 Facilitates Coordinated Progression Through Germ Cell Development in Caenorhabditis elegans |
| Q30385188 | The appeasement of Doug: a synthetic approach to enhancer biology. |
| Q47237663 | The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors |
| Q47435347 | The three-dimensional genome: regulating gene expression during pluripotency and development. |
| Q36113113 | Tissue- and Time-Specific Expression of Otherwise Identical tRNA Genes |
| Q40473877 | Transcription Factor Activity Mapping of a Tissue-Specific in vivo Gene Regulatory Network. |
| Q37091313 | Understanding transcriptional regulatory networks using computational models. |
| Q57325854 | Corrigendum: Regulatory analysis of the C. elegans genome with spatiotemporal resolution | main subject | P921 |
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