scholarly article | Q13442814 |
P50 | author | Julie Ahringer | Q15709495 |
Ni Huang | Q89147437 | ||
Jürgen Jänes | Q92580051 | ||
Przemyslaw Stempor | Q42209223 | ||
P2093 | author name string | Yan Dong | |
Annette Steward | |||
Sascha Sauer | |||
Ron Chen | |||
Carolina Gemma | |||
Chiara Cerrato | |||
Alex Appert | |||
Carson Woodbury | |||
Djem Kissiov | |||
Eva Zeiser | |||
Jacques Serizay | |||
Michael Schoof | |||
P2860 | cites work | Uncoupling transcription from covalent histone modification | Q21144875 |
A large fraction of extragenic RNA pol II transcription sites overlap enhancers | Q21145794 | ||
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RNA exosome depletion reveals transcription upstream of active human promoters | Q24321777 | ||
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Antisense RNA polymerase II divergent transcripts are P-TEFb dependent and substrates for the RNA exosome | Q24600491 | ||
Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities | Q24617969 | ||
A fasting-responsive signaling pathway that extends life span in C. elegans | Q46632783 | ||
Nuclear stability and transcriptional directionality separate functionally distinct RNA species | Q46815592 | ||
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The GATA-factor elt-2 is essential for formation of the Caenorhabditis elegans intestine | Q47069157 | ||
nhr-25, the Caenorhabditis elegans ortholog of ftz-f1, is required for epidermal and somatic gonad development | Q47069538 | ||
The modERN Resource: Genome-Wide Binding Profiles for Hundreds of Drosophila and Caenorhabditis elegans Transcription Factors | Q47237663 | ||
The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription | Q48148100 | ||
Widespread transcriptional pausing and elongation control at enhancers. | Q49598111 | ||
Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. | Q50725987 | ||
Transcription start site analysis reveals widespread divergent transcription in D. melanogaster and core promoter-encoded enhancer activities. | Q55263322 | ||
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Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
Architectural and Functional Commonalities between Enhancers and Promoters | Q26796369 | ||
Deactivation of the GATA Transcription Factor ELT-2 Is a Major Driver of Normal Aging in C. elegans | Q27308993 | ||
Fatty acid desaturation links germ cell loss to longevity through NHR-80/HNF4 in C. elegans | Q27322410 | ||
High-throughput in vivo analysis of gene expression in Caenorhabditis elegans | Q27334278 | ||
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Q28131828 | ||
Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters | Q28302903 | ||
BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 | Q29547403 | ||
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Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
Discovery and characterization of chromatin states for systematic annotation of the human genome | Q29614411 | ||
Integrative analysis of 111 reference human epigenomes | Q29615565 | ||
Single-copy insertion of transgenes in Caenorhabditis elegans | Q29617695 | ||
Regulation of the Caenorhabditis elegans longevity protein DAF-16 by insulin/IGF-1 and germline signaling | Q29619762 | ||
Age-dependent response of CCAAT/enhancer binding proteins following traumatic brain injury in mice | Q33624728 | ||
DRE-1/FBXO11-dependent degradation of BLMP-1/BLIMP-1 governs C. elegans developmental timing and maturation | Q33693747 | ||
Stress-induced activation of heterochromatic transcription. | Q33742118 | ||
MosSCI and gateway compatible plasmid toolkit for constitutive and inducible expression of transgenes in the C. elegans germline | Q33921384 | ||
Systematic bias in high-throughput sequencing data and its correction by BEADS. | Q33925015 | ||
The Caenorhabditis elegans GATA factor ELT-1 works through the cell proliferation regulator BRO-1 and the Fusogen EFF-1 to maintain the seam stem-like fate | Q33987582 | ||
BigWig and BigBed: enabling browsing of large distributed datasets | Q34070727 | ||
Comparative analysis of the transcriptome across distant species | Q34139425 | ||
Transcription initiation platforms and GTF recruitment at tissue-specific enhancers and promoters. | Q34201243 | ||
Intragenic enhancers act as alternative promoters | Q34248670 | ||
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position | Q34375601 | ||
Snakemake--a scalable bioinformatics workflow engine | Q34386337 | ||
Comparative analysis of regulatory information and circuits across distant species | Q34435561 | ||
Aging. Lysosomal signaling molecules regulate longevity in Caenorhabditis elegans | Q34456343 | ||
Integrative annotation of chromatin elements from ENCODE data | Q34503932 | ||
A global analysis of C. elegans trans-splicing | Q34548280 | ||
xnd-1 regulates the global recombination landscape in Caenorhabditis elegans. | Q34610168 | ||
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers | Q34626036 | ||
Divergent transcription of long noncoding RNA/mRNA gene pairs in embryonic stem cells | Q34647935 | ||
A comparative encyclopedia of DNA elements in the mouse genome | Q34700119 | ||
Comprehensive analysis of the chromatin landscape in Drosophila melanogaster | Q35030499 | ||
WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis | Q35074245 | ||
H3K4 tri-methylation provides an epigenetic signature of active enhancers | Q35422275 | ||
Dynamic reprogramming of chromatin accessibility during Drosophila embryo development | Q35561152 | ||
Integrative analysis of haplotype-resolved epigenomes across human tissues. | Q35665495 | ||
g:Profiler-a web server for functional interpretation of gene lists (2016 update) | Q35995136 | ||
ElemeNT: a computational tool for detecting core promoter elements | Q36088813 | ||
Absence of canonical marks of active chromatin in developmentally regulated genes | Q36223102 | ||
Genome-wide mapping of autonomous promoter activity in human cells | Q36233375 | ||
CapSeq and CIP-TAP identify Pol II start sites and reveal capped small RNAs as C. elegans piRNA precursors | Q36635707 | ||
Nicotinamide mononucleotide adenylyltransferase promotes hypoxic survival by activating the mitochondrial unfolded protein response | Q36847553 | ||
Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation. | Q36942407 | ||
Mitochondrial Stress Induces Chromatin Reorganization to Promote Longevity and UPR(mt). | Q36956834 | ||
L1 arrest, daf-16/FoxO and nonautonomous control of post-embryonic development | Q37016032 | ||
The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures | Q37061192 | ||
The transcription start site landscape of C. elegans | Q37061196 | ||
High-throughput functional comparison of promoter and enhancer activities | Q37148610 | ||
Co-transcriptional splicing of constitutive and alternative exons | Q37344492 | ||
Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes | Q37417986 | ||
A systematic comparison reveals substantial differences in chromosomal versus episomal encoding of enhancer activity. | Q37548504 | ||
Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model. | Q38275663 | ||
SL1 trans-splicing specified by AU-rich synthetic RNA inserted at the 5' end of Caenorhabditis elegans pre-mRNA | Q38297227 | ||
A unified architecture of transcriptional regulatory elements | Q38527586 | ||
Comprehensive single-cell transcriptional profiling of a multicellular organism. | Q38619221 | ||
Extreme HOT regions are CpG-dense promoters in C. elegans and humans | Q42209149 | ||
Regulatory analysis of the C. elegans genome with spatiotemporal resolution | Q42429601 | ||
PQM-1 complements DAF-16 as a key transcriptional regulator of DAF-2-mediated development and longevity | Q42585902 | ||
3' UTRs are the primary regulators of gene expression in the C. elegans germline | Q43241207 | ||
Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans. | Q45943868 | ||
Genome-wide discovery of active regulatory elements and transcription factor footprints in Caenorhabditis elegans using DNase-seq. | Q46336976 | ||
P4510 | describes a project that uses | DESeq2 | Q113018293 |
P407 | language of work or name | English | Q1860 |
P577 | publication date | 2018-10-26 | |
P1433 | published in | eLife | Q2000008 |
P1476 | title | Chromatin accessibility dynamics across C. elegans development and ageing | |
P478 | volume | 7 |
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Q89946693 | Chromosome-Level Assembly of the Caenorhabditis remanei Genome Reveals Conserved Patterns of Nematode Genome Organization |
Q83224291 | Combinatorial chromatin dynamics foster accurate cardiopharyngeal fate choices |
Q64054739 | Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis |
Q90644667 | Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans |
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