Systematic bias in high-throughput sequencing data and its correction by BEADS.

scientific article

Systematic bias in high-throughput sequencing data and its correction by BEADS. is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1093/NAR/GKR425
P932PMC publication ID3159482
P698PubMed publication ID21646344
P5875ResearchGate publication ID51196521

P50authorJulie AhringerQ15709495
Isabel LatorreQ35703615
P2093author name stringThomas A Down
Ming-Sin Cheung
P2860cites workChromatin organization marks exon-intron structureQ57058000
Model-based analysis of ChIP-Seq (MACS)Q21183902
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq dataQ24595121
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsQ24632506
The transcriptional landscape of the yeast genome defined by RNA sequencingQ24633693
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasetsQ24655245
A large genome center's improvements to the Illumina sequencing systemQ24656090
High-resolution profiling of histone methylations in the human genomeQ27860906
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE projectQ28301622
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controlsQ28305773
ChIP-seq: advantages and challenges of a maturing technologyQ29615336
Substantial biases in ultra-short read data sets from high-throughput DNA sequencingQ29617050
An integrated software system for analyzing ChIP-chip and ChIP-seq dataQ33382059
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaksQ33390488
Patterns of exon-intron architecture variation of genes in eukaryotic genomesQ33402670
A clustering approach for identification of enriched domains from histone modification ChIP-Seq dataQ33464035
Extracting transcription factor targets from ChIP-Seq dataQ33474249
Impact of chromatin structures on DNA processing for genomic analysesQ33495181
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny.Q33686906
Computation for ChIP-seq and RNA-seq studiesQ33999125
Mapping accessible chromatin regions using Sono-SeqQ34999369
Caenorhabditis elegans mutant allele identification by whole-genome sequencingQ36952009
Design and analysis of ChIP-seq experiments for DNA-binding proteinsQ37003887
Differential chromatin marking of introns and expressed exons by H3K36me3.Q37111430
Evaluation of next generation sequencing platforms for population targeted sequencing studiesQ37213808
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiationQ37367035
Transcriptome analysis by strand-specific sequencing of complementary DNA.Q37393534
Massively parallel resequencing of the isogenic Drosophila melanogaster strain w(1118); iso-2; iso-3 identifies hotspots for mutations in sensory perception genesQ42870211
P275copyright licenseCreative Commons Attribution-NonCommercial 3.0 UnportedQ18810331
P6216copyright statuscopyrightedQ50423863
P433issue15
P407language of work or nameEnglishQ1860
P921main subjectbiasQ742736
high-throughput sequencingQ112147935
P304page(s)e103
P577publication date2011-06-06
P1433published inNucleic Acids ResearchQ135122
P1476titleSystematic bias in high-throughput sequencing data and its correction by BEADS.
P478volume39

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