scholarly article | Q13442814 |
P50 | author | Julie Ahringer | Q15709495 |
Isabel Latorre | Q35703615 | ||
P2093 | author name string | Thomas A Down | |
Ming-Sin Cheung | |||
P2860 | cites work | Chromatin organization marks exon-intron structure | Q57058000 |
Model-based analysis of ChIP-Seq (MACS) | Q21183902 | ||
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data | Q24595121 | ||
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells | Q24632506 | ||
The transcriptional landscape of the yeast genome defined by RNA sequencing | Q24633693 | ||
Mapping short DNA sequencing reads and calling variants using mapping quality scores | Q24644612 | ||
The Integrated Genome Browser: free software for distribution and exploration of genome-scale datasets | Q24655245 | ||
A large genome center's improvements to the Illumina sequencing system | Q24656090 | ||
High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls | Q28305773 | ||
ChIP-seq: advantages and challenges of a maturing technology | Q29615336 | ||
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing | Q29617050 | ||
An integrated software system for analyzing ChIP-chip and ChIP-seq data | Q33382059 | ||
Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks | Q33390488 | ||
Patterns of exon-intron architecture variation of genes in eukaryotic genomes | Q33402670 | ||
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data | Q33464035 | ||
Extracting transcription factor targets from ChIP-Seq data | Q33474249 | ||
Impact of chromatin structures on DNA processing for genomic analyses | Q33495181 | ||
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny. | Q33686906 | ||
Computation for ChIP-seq and RNA-seq studies | Q33999125 | ||
Mapping accessible chromatin regions using Sono-Seq | Q34999369 | ||
Caenorhabditis elegans mutant allele identification by whole-genome sequencing | Q36952009 | ||
Design and analysis of ChIP-seq experiments for DNA-binding proteins | Q37003887 | ||
Differential chromatin marking of introns and expressed exons by H3K36me3. | Q37111430 | ||
Evaluation of next generation sequencing platforms for population targeted sequencing studies | Q37213808 | ||
X chromosome repression by localization of the C. elegans dosage compensation machinery to sites of transcription initiation | Q37367035 | ||
Transcriptome analysis by strand-specific sequencing of complementary DNA. | Q37393534 | ||
Massively parallel resequencing of the isogenic Drosophila melanogaster strain w(1118); iso-2; iso-3 identifies hotspots for mutations in sensory perception genes | Q42870211 | ||
P275 | copyright license | Creative Commons Attribution-NonCommercial 3.0 Unported | Q18810331 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 15 | |
P407 | language of work or name | English | Q1860 |
P921 | main subject | bias | Q742736 |
high-throughput sequencing | Q112147935 | ||
P304 | page(s) | e103 | |
P577 | publication date | 2011-06-06 | |
P1433 | published in | Nucleic Acids Research | Q135122 |
P1476 | title | Systematic bias in high-throughput sequencing data and its correction by BEADS. | |
P478 | volume | 39 |
Q30594568 | A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data |
Q33574854 | A team of heterochromatin factors collaborates with small RNA pathways to combat repetitive elements and germline stress |
Q47652803 | Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data |
Q40056915 | An Alternative STAT Signaling Pathway Acts in Viral Immunity in Caenorhabditis elegans |
Q21266653 | An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies |
Q34985052 | Analysis of Phakopsora pachyrhizi transcript abundance in critical pathways at four time-points during infection of a susceptible soybean cultivar using deep sequencing |
Q34126519 | Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae |
Q38689385 | B cell differentiation is associated with reprogramming the CCCTC binding factor-dependent chromatin architecture of the murine MHC class II locus |
Q30994950 | BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates. |
Q30573512 | CHANCE: comprehensive software for quality control and validation of ChIP-seq data |
Q26771372 | Can all heritable biology really be reduced to a single dimension? |
Q34024936 | ChIP-Seq: technical considerations for obtaining high-quality data |
Q34644399 | ChIP-seq and beyond: new and improved methodologies to detect and characterize protein-DNA interactions |
Q34368738 | ChIPnorm: a statistical method for normalizing and identifying differential regions in histone modification ChIP-seq libraries. |
Q21132673 | Chromatin accessibility data sets show bias due to sequence specificity of the DNase I enzyme |
Q58541925 | Chromatin accessibility dynamics across development and ageing |
Q35598507 | Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq). |
Q34641823 | Common distal elements orchestrate CIITA isoform-specific expression in multiple cell types |
Q49353419 | Compositional Bias in Naïve and Chemically-modified Phage-Displayed Libraries uncovered by Paired-end Deep Sequencing |
Q50251343 | Comprehensive transcriptome and improved genome annotation of Bacillus licheniformis WX-02. |
Q34373648 | Copy-number-aware differential analysis of quantitative DNA sequencing data |
Q34776833 | Coverage bias and sensitivity of variant calling for four whole-genome sequencing technologies |
Q30935536 | Detecting non-allelic homologous recombination from high-throughput sequencing data |
Q64075063 | Detection of False-Positive Deletions from the Database of Genomic Variants |
Q39532756 | Differential peak calling of ChIP-seq signals with replicates with THOR |
Q31125424 | Directional RNA-seq reveals highly complex condition-dependent transcriptomes in E. coli K12 through accurate full-length transcripts assembling |
Q36012704 | Enrichment of H3K9me2 on Unsynapsed Chromatin in Caenorhabditis elegans Does Not Target de Novo Sites |
Q37587714 | Epigenetic regulation of Plasmodium falciparum clonally variant gene expression during development in Anopheles gambiae |
Q60913075 | Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing |
Q36543281 | Evidence classification of high-throughput protocols and confidence integration in RegulonDB. |
Q42209149 | Extreme HOT regions are CpG-dense promoters in C. elegans and humans |
Q36379862 | GLANET: Genomic Loci ANnotation and Enrichment Tool. |
Q34465988 | Gene expression. Statistics requantitates the central dogma |
Q41660716 | Genome Survey Sequencing of Luffa Cylindrica L. and Microsatellite High Resolution Melting (SSR-HRM) Analysis for Genetic Relationship of Luffa Genotypes |
Q34298088 | Genome sequencing of Mycobacterium abscessus isolates from patients in the united states and comparisons to globally diverse clinical strains |
Q36214379 | Genome survey of pistachio (Pistacia vera L.) by next generation sequencing: Development of novel SSR markers and genetic diversity in Pistacia species. |
Q34854692 | Genome survey sequencing and genetic background characterization of Gracilariopsis lemaneiformis (Rhodophyta) based on next-generation sequencing |
Q37597374 | Genomic characterization of the mouse ribosomal DNA locus |
Q90198922 | Genomic loci susceptible to systematic sequencing bias in clinical whole genomes |
Q52591846 | Global characterization of copy number variants in epilepsy patients from whole genome sequencing. |
Q64092600 | H3K9me3 is required for inheritance of small RNAs that target a unique subset of newly evolved genes |
Q27331824 | H4K20me1 contributes to downregulation of X-linked genes for C. elegans dosage compensation |
Q30826585 | Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization |
Q64067903 | Hierarchical Reconstruction of High-Resolution 3D Models of Large Chromosomes |
Q56894047 | Human copy number variants are enriched in regions of low mappability |
Q39337607 | Improving accuracy of DNA diet estimates using food tissue control materials and an evaluation of proxies for digestion bias. |
Q30412372 | Investigation into the annotation of protocol sequencing steps in the sequence read archive. |
Q30560716 | Iterative correction of Hi-C data reveals hallmarks of chromosome organization |
Q27304509 | Modified screening and ranking algorithm for copy number variation detection |
Q35600008 | Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes. |
Q30440990 | Non-random DNA fragmentation in next-generation sequencing. |
Q34193463 | Non-targeted transcription factors motifs are a systemic component of ChIP-seq datasets |
Q34496747 | Noninvasive Fetal Trisomy (NIFTY) test: an advanced noninvasive prenatal diagnosis methodology for fetal autosomal and sex chromosomal aneuploidies |
Q34442765 | Nucleosomal occupancy changes locally over key regulatory regions during cell differentiation and reprogramming |
Q33768883 | OccuPeak: ChIP-Seq peak calling based on internal background modelling |
Q92205128 | PattRec: An easy-to-use CNV detection tool optimized for targeted NGS assays with diagnostic purposes |
Q33805165 | Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria |
Q90644667 | Physical and functional interaction between SET1/COMPASS complex component CFP-1 and a Sin3S HDAC complex in C. elegans |
Q21563477 | Practical guidelines for the comprehensive analysis of ChIP-seq data |
Q34439703 | Predicting the human epigenome from DNA motifs |
Q30559360 | Predictive models of gene regulation from high-throughput epigenomics data |
Q30743735 | Prevention, diagnosis and treatment of high-throughput sequencing data pathologies |
Q34670234 | Quantifying sequence proportions in a DNA-based diet study using Ion Torrent amplicon sequencing: which counts count? |
Q28950947 | Quantitative analysis of ChIP-seq data uncovers dynamic and sustained H3K4me3 and H3K27me3 modulation in cancer cells under hypoxia |
Q39600191 | RNA editing generates cellular subsets with diverse sequence within populations |
Q34580821 | Robust Detection and Identification of Sparse Segments in Ultra-High Dimensional Data Analysis |
Q35328717 | SORTCERY-A High-Throughput Method to Affinity Rank Peptide Ligands |
Q38816948 | Sequencing on the SOLiD 5500xl System - in-depth characterization of the GC bias |
Q51542428 | Single-tube linear DNA amplification for genome-wide studies using a few thousand cells. |
Q37469459 | Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast |
Q37417986 | Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes |
Q28728245 | Summarizing and correcting the GC content bias in high-throughput sequencing |
Q37613848 | System wide analyses have underestimated protein abundances and the importance of transcription in mammals |
Q28484453 | Systematic identification of rhythmic genes reveals camk1gb as a new element in the circadian clockwork |
Q34465541 | The DREAM complex promotes gene body H2A.Z for target repression |
Q60922622 | The USTC co-opts an ancient machinery to drive piRNA transcription in |
Q37061192 | The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures |
Q57903255 | Umap and Bismap: quantifying genome and methylome mappability |
Q34408727 | Universal count correction for high-throughput sequencing |
Q58741660 | Using controls to limit false discovery in the era of big data |
Q60922627 | Widespread roles of enhancer-like transposable elements in cell identity and long-range genomic interactions |
Q33860863 | deepTools: a flexible platform for exploring deep-sequencing data. |
Search more.