| scholarly article | Q13442814 |
| P2093 | author name string | Dohm JC | |
| Himmelbauer H | |||
| Borodina T | |||
| Lottaz C | |||
| P2860 | cites work | DNA sequencing with chain-terminating inhibitors | Q22066207 |
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| Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines | Q28768291 | ||
| Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning | Q29615977 | ||
| Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing | Q29618021 | ||
| Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction | Q29618837 | ||
| Accuracy and quality of massively parallel DNA pyrosequencing | Q29622857 | ||
| Identification and prevention of a GC content bias in SAGE libraries | Q30993273 | ||
| Sequence biases in large scale gene expression profiling data | Q31048727 | ||
| Multiplex sequencing of paired-end ditags (MS-PET): a strategy for the ultra-high-throughput analysis of transcriptomes and genomes | Q33250141 | ||
| Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology | Q33261408 | ||
| 454 sequencing put to the test using the complex genome of barley | Q33261654 | ||
| Gene discovery and annotation using LCM-454 transcriptome sequencing. | Q33263183 | ||
| Polony multiplex analysis of gene expression (PMAGE) in mouse hypertrophic cardiomyopathy | Q33287095 | ||
| PCR bias in amplification of androgen receptor alleles, a trinucleotide repeat marker used in clonality studies | Q34747077 | ||
| Whole-genome sequencing and variant discovery in C. elegans. | Q47595683 | ||
| Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing | Q48080987 | ||
| P433 | issue | 16 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | DNA sequencing | Q380546 |
| bias | Q742736 | ||
| P304 | page(s) | e105 | |
| P577 | publication date | 2008-09-01 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Substantial biases in ultra-short read data sets from high-throughput DNA sequencing | |
| P478 | volume | 36 |
| Q36099019 | A Cost-Effective Approach to Sequence Hundreds of Complete Mitochondrial Genomes |
| Q22065895 | A Draft Sequence of the Neandertal Genome |
| Q99726119 | A Pan-Genome Guided Metabolic Network Reconstruction of Five Propionibacterium Species Reveals Extensive Metabolic Diversity |
| Q30594568 | A Poisson hierarchical modelling approach to detecting copy number variation in sequence coverage data |
| Q57536768 | A Post-Hoc Comparison of the Utility of Sanger Sequencing and Exome Sequencing for the Diagnosis of Heterogeneous Diseases |
| Q35798971 | A Retrospective Study on Genetic Heterogeneity within Treponema Strains: Subpopulations Are Genetically Distinct in a Limited Number of Positions. |
| Q33519472 | A SNP discovery method to assess variant allele probability from next-generation resequencing data |
| Q31007638 | A Statistical Framework for the Analysis of ChIP-Seq Data |
| Q27006381 | A bumpy ride on the diagnostic bench of massive parallel sequencing, the case of the mitochondrial genome |
| Q37121864 | A comparative analysis of algorithms for somatic SNV detection in cancer. |
| Q28742310 | A comparison of single molecule and amplification based sequencing of cancer transcriptomes |
| Q31109005 | A comparison of tools for the simulation of genomic next-generation sequencing data |
| Q21142653 | A complete mitochondrial genome sequence from a mesolithic wild aurochs (Bos primigenius) |
| Q47401086 | A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model |
| Q29547262 | A framework for variation discovery and genotyping using next-generation DNA sequencing data |
| Q35530102 | A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes |
| Q34518411 | A genome-wide view of microsatellite instability: old stories of cancer mutations revisited with new sequencing technologies |
| Q37532834 | A guide for the design of evolve and resequencing studies |
| Q28748815 | A metagenomic analysis of pandemic influenza A (2009 H1N1) infection in patients from North America |
| Q38741312 | A molecular portrait of microsatellite instability across multiple cancers |
| Q34123440 | A myriad of miRNA variants in control and Huntington's disease brain regions detected by massively parallel sequencing |
| Q36032689 | A new amplicon based approach of whole mitogenome sequencing for phylogenetic and phylogeographic analysis: An example of East African white-eyes (Aves, Zosteropidae). |
| Q34279191 | A new approach for detecting low-level mutations in next-generation sequence data |
| Q31054927 | A new approach for the joint analysis of multiple ChIP-seq libraries with application to histone modification |
| Q35861626 | A new approach to bias correction in RNA-Seq |
| Q34703740 | A new framework to accurately quantify soil bacterial community diversity from DGGE. |
| Q33912933 | A novel and well-defined benchmarking method for second generation read mapping |
| Q34299351 | A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE. |
| Q34004487 | A powerful and flexible statistical framework for testing hypotheses of allele-specific gene expression from RNA-seq data |
| Q33812542 | A short survey of computational analysis methods in analysing ChIP-seq data |
| Q33523803 | A statistical method for the detection of alternative splicing using RNA-seq |
| Q33896309 | A statistical method for the detection of variants from next-generation resequencing of DNA pools |
| Q38001613 | A survey of error-correction methods for next-generation sequencing |
| Q34557864 | A survey of tools for variant analysis of next-generation genome sequencing data |
| Q33673643 | A three-caller pipeline for variant analysis of cancer whole-exome sequencing data |
| Q34055287 | A wide extent of inter-strain diversity in virulent and vaccine strains of alphaherpesviruses |
| Q31050545 | ADEPT, a dynamic next generation sequencing data error-detection program with trimming |
| Q61444158 | Accessible molecular phylogenomics at no cost: obtaining 14 new mitogenomes for the ant subfamily Pseudomyrmecinae from public data |
| Q47652803 | Accounting for GC-content bias reduces systematic errors and batch effects in ChIP-seq data |
| Q30501204 | Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. |
| Q34548839 | Accuracy of RNA-Seq and its dependence on sequencing depth |
| Q33530810 | Accurate detection and genotyping of SNPs utilizing population sequencing data |
| Q35804768 | Accurate, rapid taxonomic classification of fungal large-subunit rRNA genes |
| Q34277532 | Activation of the carbon concentrating mechanism by CO2 deprivation coincides with massive transcriptional restructuring in Chlamydomonas reinhardtii. |
| Q37808675 | Advances in analysis of transcriptional regulatory networks |
| Q28079766 | Advantages of Array-Based Technologies for Pre-Emptive Pharmacogenomics Testing |
| Q34873285 | Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes |
| Q38726211 | Affinity Maturation of a Cyclic Peptide Handle for Therapeutic Antibodies Using Deep Mutational Scanning |
| Q34179097 | All Your Base: a fast and accurate probabilistic approach to base calling |
| Q31046453 | Altools: a user friendly NGS data analyser. |
| Q33418269 | Amplification-free Illumina sequencing-library preparation facilitates improved mapping and assembly of (G+C)-biased genomes |
| Q47552849 | An Evolutionary/Biochemical Connection Between Promoter- and Primer-Dependent Polymerases Revealed by Selective Evolution of Ligands by Exponential Enrichment (SELEX). |
| Q92877054 | An Internal Control for Evaluating Bisulfite Conversion in the Analysis of Short Stature Homeobox 2 Methylation in Lung Cancer |
| Q31077769 | An NGS Workflow Blueprint for DNA Sequencing Data and Its Application in Individualized Molecular Oncology. |
| Q34647373 | An RNA-seq protocol to identify mRNA expression changes in mouse diaphyseal bone: applications in mice with bone property altering Lrp5 mutations |
| Q34086128 | An efficient procedure for plant organellar genome assembly, based on whole genome data from the 454 GS FLX sequencing platform |
| Q30597080 | An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data |
| Q35003488 | An evaluation of the PacBio RS platform for sequencing and de novo assembly of a chloroplast genome |
| Q34126519 | Analysis of biological features associated with meiotic recombination hot and cold spots in Saccharomyces cerevisiae |
| Q33659736 | Analysis of plant microbe interactions in the era of next generation sequencing technologies |
| Q35574887 | Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing |
| Q33825803 | Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries |
| Q34355270 | Application of next generation qPCR and sequencing platforms to mRNA biomarker analysis |
| Q37739034 | Application of second-generation sequencing to cancer genomics |
| Q38047634 | Argonaute CLIP--a method to identify in vivo targets of miRNAs |
| Q33538377 | Assembly algorithms for next-generation sequencing data |
| Q37761251 | Assembly of large genomes using second-generation sequencing |
| Q37157786 | Assessing the reproducibility of exome copy number variations predictions |
| Q34590503 | Assessment of clinical analytical sensitivity and specificity of next-generation sequencing for detection of simple and complex mutations |
| Q47245767 | Assessment of mitochondrial DNA heteroplasmy detected on commercial panel using MPS system with artificial mixture samples |
| Q41595566 | Atropos: specific, sensitive, and speedy trimming of sequencing reads |
| Q30994950 | BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates. |
| Q30500790 | BIPES, a cost-effective high-throughput method for assessing microbial diversity. |
| Q34399477 | BLESS: bloom filter-based error correction solution for high-throughput sequencing reads. |
| Q30950479 | BOAT: Basic Oligonucleotide Alignment Tool |
| Q33563291 | BS Seeker: precise mapping for bisulfite sequencing |
| Q31053878 | Balanced codon usage optimizes eukaryotic translational efficiency |
| Q33958976 | Barcoding bias in high-throughput multiplex sequencing of miRNA. |
| Q35697267 | Bayesian Hierarchical Model for Differential Gene Expression Using RNA-seq Data |
| Q50862043 | Bayexer: an accurate and fast Bayesian demultiplexer for Illumina sequences. |
| Q55715465 | Benchmarking differential expression analysis tools for RNA-Seq: normalization-based vs. log-ratio transformation-based methods. |
| Q34768286 | Benchmarking short sequence mapping tools |
| Q26798433 | Best practices for evaluating single nucleotide variant calling methods for microbial genomics |
| Q33965458 | Bias detection and correction in RNA-Sequencing data |
| Q38701117 | Biased selection of propagation-related TUPs from phage display peptide libraries |
| Q24620975 | Biases in Illumina transcriptome sequencing caused by random hexamer priming |
| Q34248231 | Biases in read coverage demonstrated by interlaboratory and interplatform comparison of 117 mRNA and genome sequencing experiments. |
| Q37623244 | Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing |
| Q30731247 | BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution |
| Q41000676 | CGAL: computing genome assembly likelihoods |
| Q33725108 | CNAseg--a novel framework for identification of copy number changes in cancer from second-generation sequencing data. |
| Q30887163 | CNOGpro: detection and quantification of CNVs in prokaryotic whole-genome sequencing data |
| Q96765578 | CONY: A Bayesian procedure for detecting copy number variations from sequencing read depths |
| Q35842534 | Canonical A-to-I and C-to-U RNA editing is enriched at 3'UTRs and microRNA target sites in multiple mouse tissues |
| Q40908945 | Carrier frequency of guanidinoacetate methyltransferase deficiency in the general population by functional characterization of missense variants in the GAMT gene |
| Q30397652 | Cell-Based Systems Biology Analysis of Human AS03-Adjuvanted H5N1 Avian Influenza Vaccine Responses: A Phase I Randomized Controlled Trial |
| Q28274448 | ChIP-seq guidelines and practices of the ENCODE and modENCODE consortia |
| Q28727944 | Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data |
| Q33922681 | Characterization of background noise in capture-based targeted sequencing data |
| Q35899157 | Characterization of sequence-specific errors in various next-generation sequencing systems |
| Q30635784 | Characterizing and measuring bias in sequence data |
| Q38346030 | Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). |
| Q33872269 | Chromatin organization in sperm may be the major functional consequence of base composition variation in the human genome |
| Q57058000 | Chromatin organization marks exon-intron structure |
| Q33822037 | Chromatin profiling by directly sequencing small quantities of immunoprecipitated DNA. |
| Q31041831 | ClinQC: a tool for quality control and cleaning of Sanger and NGS data in clinical research. |
| Q57789633 | Clinical Metagenomic Next-Generation Sequencing for Pathogen Detection |
| Q39824867 | Clinical exome performance for reporting secondary genetic findings |
| Q30720040 | Combining DGE and RNA-sequencing data to identify new polyA+ non-coding transcripts in the human genome |
| Q34526801 | Coming of age: ten years of next-generation sequencing technologies |
| Q30455450 | Comparative RNA-Seq and microarray analysis of gene expression changes in B-cell lymphomas of Canis familiaris. |
| Q30771291 | Comparative analysis of methods for identifying somatic copy number alterations from deep sequencing data |
| Q39449644 | Comparative analysis of whole genome sequencing-based telomere length measurement techniques |
| Q21562139 | Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing |
| Q38958195 | Comparative genomic analysis of Xanthomonas axonopodis pv. citrumelo F1, which causes citrus bacterial spot disease, and related strains provides insights into virulence and host specificity |
| Q34765422 | Comparative polygenic analysis of maximal ethanol accumulation capacity and tolerance to high ethanol levels of cell proliferation in yeast |
| Q28659832 | Comparative transcriptome of wild type and selected strains of the microalgae Tisochrysis lutea provides insights into the genetic basis, lipid metabolism and the life cycle |
| Q35133686 | Comparison of CAGE and RNA-seq transcriptome profiling using clonally amplified and single-molecule next-generation sequencing |
| Q30580412 | Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data. |
| Q31035102 | Comparison of normalization and differential expression analyses using RNA-Seq data from 726 individual Drosophila melanogaster |
| Q33911299 | Comparison of sequence reads obtained from three next-generation sequencing platforms |
| Q34584099 | Comparison of sequencing platforms for single nucleotide variant calls in a human sample |
| Q60921590 | Complete Genome Sequence and Comparative Analysis of sp. CS-601 (SynAce01), a Cold-Adapted Cyanobacterium from an Oligotrophic Antarctic Habitat |
| Q37529440 | Comprehensive analysis to improve the validation rate for single nucleotide variants detected by next-generation sequencing |
| Q37598116 | Comprehensive molecular diagnosis of 179 Leber congenital amaurosis and juvenile retinitis pigmentosa patients by targeted next generation sequencing |
| Q36025771 | Computational analysis of fitness landscapes and evolutionary networks from in vitro evolution experiments. |
| Q37618538 | Computational methods for discovering structural variation with next-generation sequencing |
| Q21134992 | ConDeTri--a content dependent read trimmer for Illumina data |
| Q35081199 | Consistent errors in first strand cDNA due to random hexamer mispriming |
| Q35981240 | Copy number polymorphism in plant genomes |
| Q35551381 | Copy number variation in the speciation of pigs: a possible prominent role for olfactory receptors |
| Q48143718 | Correcting errors in short reads by multiple alignments |
| Q33530932 | Correction: High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera |
| Q41898563 | DARIO: a ncRNA detection and analysis tool for next-generation sequencing experiments |
| Q98735850 | DINTD: Detection and Inference of Tandem Duplications From Short Sequencing Reads |
| Q90290875 | DNA Mini-Barcoding: A Derived Barcoding Method for Herbal Molecular Identification |
| Q100515583 | DNA methylation methods: global DNA methylation and methylomic analyses |
| Q41983212 | DNA polymerase preference determines PCR priming efficiency |
| Q30630961 | DRISEE overestimates errors in metagenomic sequencing data. |
| Q30625844 | DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data |
| Q38616674 | De Novo Assembly of Complete Chloroplast Genomes from Non-model Species Based on a K-mer Frequency-Based Selection of Chloroplast Reads from Total DNA Sequences. |
| Q33965730 | De novo assembly of expressed transcripts and global analysis of the Phalaenopsis aphrodite transcriptome |
| Q37448365 | Deep Sequencing of Influenza A Virus from a Human Challenge Study Reveals a Selective Bottleneck and Only Limited Intrahost Genetic Diversification |
| Q37516950 | Deep sequencing of evolving pathogen populations: applications, errors, and bioinformatic solutions |
| Q33874217 | Deep sequencing of grapevine flower and berry short RNA library for discovery of novel microRNAs and validation of precise sequences of grapevine microRNAs deposited in miRBase |
| Q44639856 | Deep sequencing to reveal new variants in pooled DNA samples |
| Q41597733 | Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms |
| Q53081074 | Deep-Coverage MPS Analysis of Heteroplasmic Variants within the mtGenome Allows for Frequent Differentiation of Maternal Relatives. |
| Q64109111 | DegNorm: normalization of generalized transcript degradation improves accuracy in RNA-seq analysis |
| Q34478586 | Denoising DNA deep sequencing data-high-throughput sequencing errors and their correction |
| Q34178885 | Design and validation issues in RNA-seq experiments |
| Q57783644 | Detecting Copy Number Variation via Next Generation Technology |
| Q88582770 | Detecting Somatic Mutations in Normal Cells |
| Q41815975 | Detecting copy number variation with mated short reads |
| Q35828069 | Detecting false-positive signals in exome sequencing |
| Q41789320 | Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes |
| Q39429363 | Detecting horizontal gene transfer by mapping sequencing reads across species boundaries. |
| Q36179858 | Detecting selective sweeps from pooled next-generation sequencing samples. |
| Q34831573 | Detecting structural variations in the human genome using next generation sequencing |
| Q38068938 | Detection and interpretation of genomic structural variation in health and disease. |
| Q30472217 | Detection and quantification of rare mutations with massively parallel sequencing |
| Q33815482 | Detection and removal of biases in the analysis of next-generation sequencing reads |
| Q64075063 | Detection of False-Positive Deletions from the Database of Genomic Variants |
| Q33568113 | Detection of Histone H3 mutations in cerebrospinal fluid-derived tumor DNA from children with diffuse midline glioma |
| Q35885444 | Detection of base substitution-type somatic mosaicism of the NLRP3 gene with >99.9% statistical confidence by massively parallel sequencing |
| Q34196484 | Detection of heterozygous mutations in the genome of mismatch repair defective diploid yeast using a Bayesian approach |
| Q35420623 | Detection theory in identification of RNA-DNA sequence differences using RNA-sequencing |
| Q34251415 | Determination of RET Sequence Variation in an MEN2 Unaffected Cohort Using Multiple-Sample Pooling and Next-Generation Sequencing |
| Q41807657 | Development and assessment of an optimized next-generation DNA sequencing approach for the mtgenome using the Illumina MiSeq |
| Q42206019 | Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites |
| Q36328650 | Development of a genus-specific next generation sequencing approach for sensitive and quantitative determination of the Legionella microbiome in freshwater systems |
| Q34797900 | Developmental regulation of human cortex transcription and its clinical relevance at single base resolution |
| Q35820352 | DiSNPindel: improved intra-individual SNP and InDel detection in direct amplicon sequencing of a diploid |
| Q57899034 | Diagnostic applications of next generation sequencing: working towards quality standards/Diagnostische Anwendung von Next Generation Sequencing: Auf dem Weg zu Qualitätsstandards |
| Q28647202 | Differential and coherent processing patterns from small RNAs |
| Q35709067 | Digital RNA sequencing minimizes sequence-dependent bias and amplification noise with optimized single-molecule barcodes |
| Q64275346 | Direct sequencing of 2'-deoxy-2'-fluoroarabinonucleic acid (FANA) using nanopore-induced phase-shift sequencing (NIPSS) |
| Q34756561 | Discovering motifs that induce sequencing errors |
| Q33967929 | Discovering transcription factor binding sites in highly repetitive regions of genomes with multi-read analysis of ChIP-Seq data |
| Q34376375 | Discovery and characterization of new transcripts from RNA-seq data in mouse CD4(+) T cells |
| Q33830167 | Discovery of barley miRNAs through deep sequencing of short reads. |
| Q54367173 | Discovery of polymorphisms in starch-related genes in rice germplasm by amplification of pooled DNA and deeply parallel sequencing. |
| Q30935585 | Distinguishing low frequency mutations from RT-PCR and sequence errors in viral deep sequencing data |
| Q34366435 | Distribution-based clustering: using ecology to refine the operational taxonomic unit |
| Q38839110 | Drug discovery in advanced prostate cancer: translating biology into therapy |
| Q33742574 | EXCAVATOR: detecting copy number variants from whole-exome sequencing data |
| Q33757200 | Effect of PCR extension temperature on high-throughput sequencing |
| Q54319458 | Effect of the metabolic environment at key stages of follicle development in cattle: focus on steroid biosynthesis. |
| Q30620847 | Effects of GC bias in next-generation-sequencing data on de novo genome assembly |
| Q31017318 | Effects of short read quality and quantity on a de novo vertebrate transcriptome assembly |
| Q38368810 | Efficiency of ddRAD target enriched sequencing across spiny rock lobster species (Palinuridae: Jasus). |
| Q34416621 | Efficient experimental design and analysis strategies for the detection of differential expression using RNA-Sequencing |
| Q42100658 | Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing |
| Q64962178 | Elimination of PCR duplicates in RNA-seq and small RNA-seq using unique molecular identifiers. |
| Q34557113 | Empirical assessment of sequencing errors for high throughput pyrosequencing data. |
| Q33748256 | Empirical bayes analysis of sequencing-based transcriptional profiling without replicates |
| Q33905450 | Epigenetic profiling of heterochromatic satellite DNA. |
| Q42063710 | Error analysis of deep sequencing of phage libraries: peptides censored in sequencing |
| Q33645217 | Error correction of next-generation sequencing data and reliable estimation of HIV quasispecies |
| Q30659610 | Estimating DNA polymorphism from next generation sequencing data with high error rate by dual sequencing applications |
| Q33892632 | Estimating Phred scores of Illumina base calls by logistic regression and sparse modeling |
| Q30859169 | Estimating genotype error rates from high-coverage next-generation sequence data |
| Q30773501 | Estimating telomere length from whole genome sequence data |
| Q34537820 | Estimation of Gene Expression at Isoform Level from mRNA-Seq Data by Bayesian Hierarchical Modeling |
| Q28713966 | Estimation of sequencing error rates in short reads |
| Q35202622 | Evaluating bias-reducing protocols for RNA sequencing library preparation |
| Q33916131 | Evaluating the fidelity of de novo short read metagenomic assembly using simulated data |
| Q28691860 | Evaluation of genome sequencing quality in selected plant species using expressed sequence tags |
| Q34070099 | Evaluation of genomic high-throughput sequencing data generated on Illumina HiSeq and genome analyzer systems |
| Q37213808 | Evaluation of next generation sequencing platforms for population targeted sequencing studies |
| Q29614452 | Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments |
| Q36543281 | Evidence classification of high-throughput protocols and confidence integration in RegulonDB. |
| Q38940663 | Exploring genome characteristics and sequence quality without a reference |
| Q60919447 | Exploring the Human Microbiome: The Potential Future Role of Next-Generation Sequencing in Disease Diagnosis and Treatment |
| Q36008201 | FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads |
| Q21563491 | Fast mapping of short sequences with mismatches, insertions and deletions using index structures |
| Q92085639 | ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest |
| Q37519997 | Frequency and type of inheritable mutations induced by γ rays in rice as revealed by whole genome sequencing |
| Q31137675 | From next-generation resequencing reads to a high-quality variant data set. |
| Q33520380 | G+C content dominates intrinsic nucleosome occupancy |
| Q30915634 | G-CNV: A GPU-Based Tool for Preparing Data to Detect CNVs with Read-Depth Methods. |
| Q31036264 | GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data |
| Q34104119 | GC-content normalization for RNA-Seq data |
| Q34159528 | GemSIM: general, error-model based simulator of next-generation sequencing data |
| Q50211505 | Gene Duplication and Dosage Effects During The Early Emergence of C4 Photosynthesis in The Grass Genus Alloteropsis. |
| Q24618283 | Gene prediction with Glimmer for metagenomic sequences augmented by classification and clustering |
| Q41537361 | Genetic Bases of Bicuspid Aortic Valve: The Contribution of Traditional and High-Throughput Sequencing Approaches on Research and Diagnosis |
| Q42174828 | Genome measures used for quality control are dependent on gene function and ancestry |
| Q35646216 | Genome-Wide Characterization of RNA Editing in Chicken Embryos Reveals Common Features among Vertebrates |
| Q37690994 | Genome-Wide Prediction of DNA Methylation Using DNA Composition and Sequence Complexity in Human |
| Q38650694 | Genome-Wide SNP Discovery and Analysis of Genetic Diversity in Farmed Sika Deer (Cervus nippon) in Northeast China Using Double-Digest Restriction-Site Associated DNA Sequencing |
| Q39283161 | Genome-scale analysis of the non-cultivable Treponema pallidum reveals extensive within-patient genetic variation |
| Q54116677 | Genome-wide (ChIP-seq) identification of target genes regulated by BdbZIP10 during paraquat-induced oxidative stress. |
| Q31134050 | Genome-wide analysis reveals coating of the mitochondrial genome by TFAM. |
| Q21133925 | Genome-wide chromatin remodeling identified at GC-rich long nucleosome-free regions |
| Q35493806 | Genome-wide depletion of replication initiation events in highly transcribed regions |
| Q34356312 | Genome-wide localization of protein-DNA binding and histone modification by a Bayesian change-point method with ChIP-seq data |
| Q28751288 | Genome-wide mutational diversity in an evolving population of Escherichia coli |
| Q34187406 | Genomic mutation rates: what high-throughput methods can tell us |
| Q34575710 | Global and disease-associated genetic variation in the human Fanconi anemia gene family |
| Q34074180 | Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping |
| Q42326267 | Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium |
| Q55120679 | Gut Dysbiosis and Muscle Aging: Searching for Novel Targets against Sarcopenia. |
| Q28545256 | HCV genotyping from NGS short reads and its application in genotype detection from HCV mixed infected plasma |
| Q35834559 | HIV-1 and HIV-2 exhibit similar mutation frequencies and spectra in the absence of G-to-A hypermutation |
| Q30666001 | HMCan: a method for detecting chromatin modifications in cancer samples using ChIP-seq data. |
| Q33747633 | HMMSplicer: a tool for efficient and sensitive discovery of known and novel splice junctions in RNA-Seq data |
| Q30586783 | HTQC: a fast quality control toolkit for Illumina sequencing data |
| Q33531768 | High nucleosome occupancy is encoded at human regulatory sequences |
| Q33393410 | High quality draft sequences for prokaryotic genomes using a mix of new sequencing technologies |
| Q30918239 | High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera |
| Q64071709 | High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis |
| Q35657974 | High-Throughput, Amplicon-Based Sequencing of the CREBBP Gene as a Tool to Develop a Universal Platform-Independent Assay |
| Q31075558 | High-dimensional genomic data bias correction and data integration using MANCIE |
| Q37072451 | High-resolution mapping of copy-number alterations with massively parallel sequencing |
| Q37222784 | High-throughput genotyping by whole-genome resequencing. |
| Q43105164 | High-throughput identification of genetic markers using representational oligonucleotide microarray analysis |
| Q28647379 | High-throughput sequencing technologies |
| Q28069401 | Host-Microbiome Interaction and Cancer: Potential Application in Precision Medicine |
| Q43494882 | How novel molecular diagnostic technologies and biomarkers are revolutionizing genetic testing and patient care |
| Q93332893 | Human Brain Single Nucleotide Polymorphism: Validation of DNA Sequencing |
| Q39177049 | Human RECQ Helicase Pathogenic Variants, Population Variation and "Missing" Diseases |
| Q22162505 | Human housekeeping genes, revisited |
| Q28270032 | Hybrid error correction and de novo assembly of single-molecule sequencing reads |
| Q30478597 | Hybrid selection of discrete genomic intervals on custom-designed microarrays for massively parallel sequencing |
| Q35634815 | IMSEQ--a fast and error aware approach to immunogenetic sequence analysis |
| Q21999522 | IVT-seq reveals extreme bias in RNA sequencing |
| Q57817195 | Identification and Quantification of Genomic Repeats and Sample Contamination in Assemblies of 454 Pyrosequencing Reads |
| Q35845732 | Identification and annotation of conserved promoters and macrophage-expressed genes in the pig genome |
| Q31041859 | Identification and correction of systematic error in high-throughput sequence data |
| Q45737762 | Identification of Novel Alleles Conferring Superior Production of Rose Flavor Phenylethyl Acetate Using Polygenic Analysis in Yeast. |
| Q34210718 | Identification of microRNAs from Amur grape (Vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics |
| Q54413738 | Identification of novel FMR1 variants by massively parallel sequencing in developmentally delayed males |
| Q42098919 | Identification of novel causative genes determining the complex trait of high ethanol tolerance in yeast using pooled-segregant whole-genome sequence analysis. |
| Q42665464 | Identifying ChIP-seq enrichment using MACS. |
| Q35617337 | Identifying TF-MiRNA Regulatory Relationships Using Multiple Features |
| Q34259456 | Identifying differentially expressed transcripts from RNA-seq data with biological variation |
| Q99554953 | Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird-of-paradise |
| Q39434293 | Identifying wrong assemblies in de novo short read primary sequence assembly contigs |
| Q49229074 | Illumina Library Preparation for Sequencing the GC-Rich Fraction of Heterogeneous Genomic DNA. |
| Q30382558 | Illumina MiSeq sequencing disfavours a sequence motif in the GFP reporter gene. |
| Q31057133 | Illumina error profiles: resolving fine-scale variation in metagenomic sequencing data |
| Q33495181 | Impact of chromatin structures on DNA processing for genomic analyses |
| Q34249667 | Impact of next-generation sequencing error on analysis of barcoded plasmid libraries of known complexity and sequence. |
| Q35534620 | Impact of three Illumina library construction methods on GC bias and HLA genotype calling. |
| Q35579962 | Impacts of degraded DNA on restriction enzyme associated DNA sequencing (RADSeq). |
| Q38262952 | Implementation of whole genome massively parallel sequencing for noninvasive prenatal testing in laboratories |
| Q42411189 | Improved canine exome designs, featuring ncRNAs and increased coverage of protein coding genes |
| Q35563550 | Improved lower bounds of DNA tags based on a modified genetic algorithm |
| Q36363939 | Improvement of genome assembly completeness and identification of novel full-length protein-coding genes by RNA-seq in the giant panda genome. |
| Q36111300 | Improving alignment accuracy on homopolymer regions for semiconductor-based sequencing technologies |
| Q34389977 | Improving mapping and SNP-calling performance in multiplexed targeted next-generation sequencing |
| Q33527204 | Incorporating sequence quality data into alignment improves DNA read mapping |
| Q38668670 | Increased sequencing depth does not increase captured diversity of arbuscular mycorrhizal fungi |
| Q38841549 | Increased taxon sampling reveals thousands of hidden orthologs in flatworms. |
| Q34382728 | Index-free de novo assembly and deconvolution of mixed mitochondrial genomes. |
| Q33430252 | Inherent signals in sequencing-based Chromatin-ImmunoPrecipitation control libraries |
| Q35542373 | Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform |
| Q36449342 | Integrating next-generation sequencing and traditional tongue diagnosis to determine tongue coating microbiome |
| Q30824606 | Integrative RNA-seq and microarray data analysis reveals GC content and gene length biases in the psoriasis transcriptome |
| Q35502599 | Introduction to bioinformatics: sequencing technology |
| Q30412372 | Investigation into the annotation of protocol sequencing steps in the sequence read archive. |
| Q61815754 | Ion Torrent and lllumina, two complementary RNA-seq platforms for constructing the holm oak (Quercus ilex) transcriptome |
| Q52806484 | Large scale variation in the rate of germ-line de novo mutation, base composition, divergence and diversity in humans. |
| Q42639402 | Large-scale DNA Barcode Library Generation for Biomolecule Identification in High-throughput Screens. |
| Q42545258 | Large-scale detection and analysis of RNA editing in grape mtDNA by RNA deep-sequencing |
| Q37655097 | Leveraging biological replicates to improve analysis in ChIP-seq experiments |
| Q35195373 | Library preparation for highly accurate population sequencing of RNA viruses |
| Q33947883 | Linear amplification for deep sequencing |
| Q41038954 | Liquid-phase sequence capture and targeted re-sequencing revealed novel polymorphisms in tomato genes belonging to the MEP carotenoid pathway. |
| Q64098292 | Long fragments achieve lower base quality in Illumina paired-end sequencing |
| Q55192719 | MERIT reveals the impact of genomic context on sequencing error rate in ultra-deep applications. |
| Q33487686 | Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling |
| Q37104903 | Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing |
| Q38583365 | Mapping the non-standardized biases of ribosome profiling |
| Q37142704 | Mapping yeast transcriptional networks |
| Q61940376 | Measurement, Summary, and Methodological Variation in RNA-sequencing |
| Q30853974 | Measuring differential gene expression with RNA-seq: challenges and strategies for data analysis |
| Q33697612 | MetMap enables genome-scale Methyltyping for determining methylation states in populations |
| Q35928950 | MetaCRAM: an integrated pipeline for metagenomic taxonomy identification and compression |
| Q40046282 | MetaCRAST: reference-guided extraction of CRISPR spacers from unassembled metagenomes |
| Q42281181 | MetaGen: reference-free learning with multiple metagenomic samples |
| Q45293759 | MicroRNA expression profiling in blood from fragile X-associated tremor/ataxia syndrome patients |
| Q34750470 | Microarray and deep sequencing cross-platform analysis of the mirRNome and isomiR variation in response to epidermal growth factor |
| Q38578772 | Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform |
| Q46764258 | Mitochondrial genome of Caenorhabditis nigoni (Rhabditida: Rhabditidae). |
| Q30494947 | Model-based quality assessment and base-calling for second-generation sequencing data |
| Q33575558 | Modeling non-uniformity in short-read rates in RNA-Seq data |
| Q92066492 | Modelling RNA-Seq data with a zero-inflated mixture Poisson linear model |
| Q34409647 | Modelling and simulating generic RNA-Seq experiments with the flux simulator |
| Q37696776 | Molecular techniques for the personalised management of patients with chronic myeloid leukaemia |
| Q37262546 | Monitoring Error Rates In Illumina Sequencing |
| Q31133867 | Multi-perspective quality control of Illumina RNA sequencing data analysis. |
| Q21092720 | Multi-platform next-generation sequencing of the domestic turkey (Meleagris gallopavo): genome assembly and analysis |
| Q34070547 | Multi-sample pooling and illumina genome analyzer sequencing methods to determine gene sequence variation for database development |
| Q31020252 | Multiple platform assessment of the EGF dependent transcriptome by microarray and deep tag sequencing analysis |
| Q30371250 | Multiplex sequencing of bacterial artificial chromosomes for assembling complex plant genomes. |
| Q30579672 | Musket: a multistage k-mer spectrum-based error corrector for Illumina sequence data |
| Q33953331 | Mutational and fitness landscapes of an RNA virus revealed through population sequencing |
| Q61456012 | NGmerge: merging paired-end reads via novel empirically-derived models of sequencing errors |
| Q42631284 | Neurospora and the dead-end hypothesis: genomic consequences of selfing in the model genus |
| Q30593939 | New insights from existing sequence data: generating breakthroughs without a pipette |
| Q27026914 | New virologic tools for management of chronic hepatitis B and C |
| Q33565212 | Next generation characterisation of cereal genomes for marker discovery |
| Q38014423 | Next generation quantitative genetics in plants |
| Q37316945 | Next generation sequencing of SNPs for non-invasive prenatal diagnosis: challenges and feasibility as illustrated by an application to β-thalassaemia. |
| Q38016945 | Next-generation sequencing and large genome assemblies |
| Q34238930 | Next-generation sequencing for cancer diagnostics: a practical perspective. |
| Q35025963 | Next-generation sequencing reveals how RNA catalysts evolve from random space. |
| Q38073562 | Next-generation sequencing technologies and their impact on microbial genomics. |
| Q47107418 | Next-generation sequencing: recent applications to the analysis of colorectal cancer. |
| Q57801296 | Noise cancellation using total variation for copy number variation detection |
| Q33578055 | Non-invasive prenatal detection of trisomy 13 using a single nucleotide polymorphism- and informatics-based approach. |
| Q35040804 | Non-invasive prenatal testing of trisomy 18 by an epigenetic marker in first trimester maternal plasma |
| Q30440990 | Non-random DNA fragmentation in next-generation sequencing. |
| Q24657306 | Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood |
| Q40220994 | Noninvasive fetal trisomy detection by multiplexed semiconductor sequencing: a barcoding analysis strategy. |
| Q24632266 | Noninvasive prenatal aneuploidy testing of chromosomes 13, 18, 21, X, and Y, using targeted sequencing of polymorphic loci |
| Q28742844 | Noninvasive prenatal diagnosis of fetal trisomy 18 and trisomy 13 by maternal plasma DNA sequencing |
| Q35016657 | Nonpareil: a redundancy-based approach to assess the level of coverage in metagenomic datasets |
| Q34376050 | Normalization of ChIP-seq data with control |
| Q34398212 | Normalization of a chromosomal contact map. |
| Q34382486 | Not all sequence tags are created equal: designing and validating sequence identification tags robust to indels |
| Q33686861 | Novel Algorithms for Improved Sensitivity in Non-Invasive Prenatal Testing |
| Q43826516 | ORMAN: optimal resolution of ambiguous RNA-Seq multimappings in the presence of novel isoforms |
| Q35102564 | On the optimal trimming of high-throughput mRNA sequence data |
| Q89932732 | Optimization of sample preparation for culture-independent sequencing of Bordetella pertussis |
| Q28751637 | Optimized design and data analysis of tag-based cytosine methylation assays |
| Q31076879 | Optimizing Illumina next-generation sequencing library preparation for extremely AT-biased genomes. |
| Q21202771 | Optimizing hybrid assembly of next-generation sequence data from Enterococcus faecium: a microbe with highly divergent genome |
| Q34902839 | Optimizing information in Next-Generation-Sequencing (NGS) reads for improving de novo genome assembly |
| Q33767163 | Overcoming bias and systematic errors in next generation sequencing data |
| Q34384736 | PCR biases distort bacterial and archaeal community structure in pyrosequencing datasets |
| Q90095467 | PCR-free whole exome sequencing: Cost-effective and efficient in detecting rare mutations |
| Q28752684 | PEMer: a computational framework with simulation-based error models for inferring genomic structural variants from massive paired-end sequencing data |
| Q41832330 | PSCC: sensitive and reliable population-scale copy number variation detection method based on low coverage sequencing |
| Q34338922 | Paired-end sequencing of Fosmid libraries by Illumina |
| Q34042372 | Paleogenomics. Genomic structure in Europeans dating back at least 36,200 years |
| Q33846955 | Partial short-read sequencing of a highly inbred Iberian pig and genomics inference thereof |
| Q30378821 | Pattern Recognition on Read Positioning in Next Generation Sequencing. |
| Q36327416 | Patterns of cross-contamination in a multispecies population genomic project: detection, quantification, impact, and solutions |
| Q33805165 | Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria |
| Q34023426 | Performance comparison of exome DNA sequencing technologies |
| Q34157198 | Performance comparison of second- and third-generation sequencers using a bacterial genome with two chromosomes |
| Q34333439 | Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite. |
| Q30996696 | PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals |
| Q58069564 | Population Genetics in Nonmodel Organisms: II. Natural Selection in Marginal Habitats Revealed by Deep Sequencing on Dual Platforms |
| Q55513021 | Post-translational buffering leads to convergent protein expression levels between primates. |
| Q39740593 | Prediction of alternative isoforms from exon expression levels in RNA-Seq experiments |
| Q30559360 | Predictive models of gene regulation from high-throughput epigenomics data |
| Q31033683 | Preliminary Genomic Characterization of Ten Hardwood Tree Species from Multiplexed Low Coverage Whole Genome Sequencing |
| Q30743735 | Prevention, diagnosis and treatment of high-throughput sequencing data pathologies |
| Q34096366 | Principles and challenges of genomewide DNA methylation analysis |
| Q33375519 | Probabilistic base calling of Solexa sequencing data |
| Q28686868 | Probabilistic error correction for RNA sequencing |
| Q51518031 | Probabilistic modeling of Hi-C contact maps eliminates systematic biases to characterize global chromosomal architecture. |
| Q39043678 | Promises and pitfalls of Illumina sequencing for HIV resistance genotyping |
| Q34955033 | Protocol matters: which methylome are you actually studying? |
| Q28607731 | Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome |
| Q33596661 | Q&A: ChIP-seq technologies and the study of gene regulation |
| Q34961911 | QTL analysis of high thermotolerance with superior and downgraded parental yeast strains reveals new minor QTLs and converges on novel causative alleles involved in RNA processing. |
| Q35167233 | Quake: quality-aware detection and correction of sequencing errors |
| Q36183073 | Quality filtering of Illumina index reads mitigates sample cross-talk |
| Q36051182 | Quantitation of next generation sequencing library preparation protocol efficiencies using droplet digital PCR assays - a systematic comparison of DNA library preparation kits for Illumina sequencing |
| Q42587248 | Quantitative miRNA expression analysis: comparing microarrays with next-generation sequencing. |
| Q42772664 | RNA sequencing shows no dosage compensation of the active X-chromosome |
| Q29619605 | RNA sequencing: advances, challenges and opportunities |
| Q42918161 | RNA-Seq gene expression estimation with read mapping uncertainty |
| Q55380958 | RNA-Seq reveals large quantitative differences between the transcriptomes of outbreak and non-outbreak locusts. |
| Q38808216 | Rapid Determination of HIV-1 Mutant Frequencies and Mutation Spectra Using an mCherry/EGFP Dual-Reporter Viral Vector |
| Q47392392 | Rapid and reliable identification of tomato fruit weight and locule number loci by QTL-seq. |
| Q30870516 | Rapid evaluation and quality control of next generation sequencing data with FaQCs. |
| Q33525062 | Rapid genomic characterization of the genus vitis |
| Q101237442 | Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists |
| Q34393870 | RazerS 3: faster, fully sensitive read mapping |
| Q42566501 | RazerS--fast read mapping with sensitivity control |
| Q30561080 | ReQON: a Bioconductor package for recalibrating quality scores from next-generation sequencing data |
| Q37971383 | Read count approach for DNA copy number variants detection |
| Q39634800 | Reciprocal intronic and exonic histone modification regions in humans. |
| Q31042913 | RecountDB: a database of mapped and count corrected transcribed sequences. |
| Q30763179 | Reducing bias in RNA sequencing data: a novel approach to compute counts |
| Q33956672 | Reducing false-positive incidental findings with ensemble genotyping and logistic regression based variant filtering methods |
| Q28475554 | Reference-free validation of short read data |
| Q36363378 | Reliability of algorithmic somatic copy number alteration detection from targeted capture data |
| Q35861321 | Removal of redundant contigs from de novo RNA-Seq assemblies via homology search improves accurate detection of differentially expressed genes |
| Q36276428 | Removing duplicate reads using graphics processing units |
| Q34143874 | Removing technical variability in RNA-seq data using conditional quantile normalization |
| Q39770352 | RepARK--de novo creation of repeat libraries from whole-genome NGS reads. |
| Q33827058 | Repeat-aware modeling and correction of short read errors |
| Q48184458 | Reptile: representative tiling for short read error correction |
| Q34994627 | Resequencing of Treponema pallidum ssp. pallidum strains Nichols and SS14: correction of sequencing errors resulted in increased separation of syphilis treponeme subclusters |
| Q34303615 | Retroviral vectors for analysis of viral mutagenesis and recombination |
| Q35613938 | Review of massively parallel DNA sequencing technologies |
| Q89838405 | S3norm: simultaneous normalization of sequencing depth and signal-to-noise ratio in epigenomic data |
| Q40647488 | SNP Formation Bias in the Murine Genome Provides Evidence for Parallel Evolution |
| Q33654758 | SNP discovery by high-throughput sequencing in soybean |
| Q51036016 | SNP discovery in nonmodel organisms: strand bias and base-substitution errors reduce conversion rates. |
| Q24627800 | SNP-based non-invasive prenatal testing detects sex chromosome aneuploidies with high accuracy |
| Q34607738 | SWAMP: Sliding Window Alignment Masker for PAML. |
| Q34964688 | Searching for SNPs with cloud computing |
| Q64927220 | Selection Has Countered High Mutability to Preserve the Ancestral Copy Number of Y Chromosome Amplicons in Diverse Human Lineages. |
| Q28752377 | Sensitivity of noninvasive prenatal detection of fetal aneuploidy from maternal plasma using shotgun sequencing is limited only by counting statistics |
| Q96953990 | Seq-ing answers: Current data integration approaches to uncover mechanisms of transcriptional regulation |
| Q34087933 | SeqBuster, a bioinformatic tool for the processing and analysis of small RNAs datasets, reveals ubiquitous miRNA modifications in human embryonic cells. |
| Q36049287 | Sequence Capture versus Restriction Site Associated DNA Sequencing for Shallow Systematics |
| Q34994735 | Sequence recombination and conservation of Varroa destructor virus-1 and deformed wing virus in field collected honey bees (Apis mellifera) |
| Q34185285 | Sequence-specific error profile of Illumina sequencers |
| Q35071297 | Sequencing error correction without a reference genome |
| Q34048306 | Sequencing of BAC pools by different next generation sequencing platforms and strategies |
| Q30454551 | Sequencing platform and library preparation choices impact viral metagenomes |
| Q27860568 | Sequencing technologies - the next generation |
| Q35080096 | Short barcodes for next generation sequencing |
| Q91473515 | Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies |
| Q35350696 | Signature gene expression reveals novel clues to the molecular mechanisms of dimorphic transition in Penicillium marneffei. |
| Q37588598 | Simultaneous Identification of Multiple Causal Mutations in Rice. |
| Q41863570 | Simultaneous mapping of multiple gene loci with pooled segregants |
| Q28659873 | Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data |
| Q47095620 | Single molecule sequencing of the M13 virus genome without amplification |
| Q36371387 | Single-Strand Consensus Sequencing Reveals that HIV Type but not Subtype Significantly Impacts Viral Mutation Frequencies and Spectra. |
| Q35737744 | Single-molecule direct RNA sequencing without cDNA synthesis |
| Q38415901 | Single-molecule sequencing: sequence methods to enable accurate quantitation. |
| Q34088575 | Single-nucleotide polymorphism-based noninvasive prenatal screening in a high-risk and low-risk cohort |
| Q51542428 | Single-tube linear DNA amplification for genome-wide studies using a few thousand cells. |
| Q33918934 | Soil-specific limitations for access and analysis of soil microbial communities by metagenomics |
| Q33704542 | SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data |
| Q58116117 | Solid-phase enzyme catalysis of DNA end repair and 3' A-tailing reduces GC-bias in next-generation sequencing of human genomic DNA |
| Q29614576 | Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing |
| Q30981347 | Sources of PCR-induced distortions in high-throughput sequencing data sets |
| Q34089210 | Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation |
| Q33808990 | Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel host |
| Q34460746 | Starcode: sequence clustering based on all-pairs search |
| Q33757432 | Statistical Analyses of Next Generation Sequence Data: A Partial Overview |
| Q30795515 | Statistical Issues in the Analysis of ChIP-Seq and RNA-Seq Data |
| Q33759546 | Statistical inference of allelic imbalance from transcriptome data |
| Q33921165 | Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology |
| Q33940980 | Strand-specific deep sequencing of the transcriptome |
| Q33762319 | Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays |
| Q28728245 | Summarizing and correcting the GC content bias in high-throughput sequencing |
| Q34483001 | Survey of endosymbionts in the Diaphorina citri metagenome and assembly of a Wolbachia wDi draft genome |
| Q57839392 | Synergy of two reference genomes for the grass family |
| Q33982410 | Synthetic spike-in standards for RNA-seq experiments |
| Q37613848 | System wide analyses have underestimated protein abundances and the importance of transcription in mammals |
| Q33925015 | Systematic bias in high-throughput sequencing data and its correction by BEADS. |
| Q56964427 | Systematic evaluation of error rates and causes in short samples in next-generation sequencing |
| Q34241267 | Systematic evaluation of factors influencing ChIP-seq fidelity |
| Q36130875 | Systematic identification of edited microRNAs in the human brain |
| Q35108984 | TASSEL-GBS: a high capacity genotyping by sequencing analysis pipeline |
| Q36247735 | Tailor: a computational framework for detecting non-templated tailing of small silencing RNAs |
| Q35557672 | Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities |
| Q36404734 | Targeted sequencing of both DNA strands barcoded and captured individually by RNA probes to identify genome-wide ultra-rare mutations |
| Q41674738 | Technical Advances in the Measurement of Residual Disease in Acute Myeloid Leukemia. |
| Q36257713 | The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline |
| Q28685216 | The Growing Importance of CNVs: New Insights for Detection and Clinical Interpretation |
| Q53160175 | The Quality Sequencing Minimum (QSM): providing comprehensive, consistent, transparent next generation sequencing data quality assurance |
| Q35569737 | The Quantification of Representative Sequences pipeline for amplicon sequencing: case study on within-population ITS1 sequence variation in a microparasite infecting Daphnia. |
| Q37629601 | The challenges of sequencing by synthesis |
| Q96648612 | The development of genome-wide single nucleotide polymorphisms in blue wildebeest using the DArTseq platform |
| Q35817838 | The distribution and impact of common copy-number variation in the genome of the domesticated apple, Malus x domestica Borkh. |
| Q21133663 | The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis) |
| Q36442608 | The genomic landscape and evolutionary resolution of antagonistic pleiotropy in yeast |
| Q36292756 | The impact of RNA secondary structure on read start locations on the Illumina sequencing platform |
| Q37412188 | The landscape of microsatellite instability in colorectal and endometrial cancer genomes |
| Q52838086 | The large-scale distribution of somatic mutations in cancer genomes. |
| Q34722569 | The majority of primate-specific regulatory sequences are derived from transposable elements |
| Q34622057 | The mutation rate of mycobacterial repetitive unit loci in strains of M. tuberculosis from cynomolgus macaque infection |
| Q35286123 | The properties and applications of single-molecule DNA sequencing. |
| Q35161303 | The role of the precursor structure in the biogenesis of microRNA |
| Q36932921 | The roles of 3'-exoribonucleases and the exosome in trypanosome mRNA degradation |
| Q28298852 | The statistical-mechanics of chromosome conformation capture |
| Q34425583 | The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus) |
| Q33628366 | Tissue-specific transcript annotation and expression profiling with complementary next-generation sequencing technologies. |
| Q30363613 | Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow |
| Q38522397 | Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling |
| Q41205104 | Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads |
| Q35175118 | Transcriptome sequence analysis of an ornamental plant, Ananas comosus var. bracteatus, revealed the potential unigenes involved in terpenoid and phenylpropanoid biosynthesis |
| Q39911107 | Transcriptomic Insights into the Life History of Bolidophytes, the Sister Lineage to Diatoms. |
| Q37555320 | Transmission bottlenecks and RNAi collectively influence tick-borne flavivirus evolution |
| Q34007229 | Transposable element dynamics among asymbiotic and ectomycorrhizal Amanita fungi. |
| Q35934860 | Trimming of sequence reads alters RNA-Seq gene expression estimates |
| Q58752808 | Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets |
| Q38923320 | Ultra-deep sequencing of VHSV isolates contributes to understanding the role of viral quasispecies |
| Q28387263 | Ultra-fast local-haplotype variant calling using paired-end DNA-sequencing data reveals somatic mosaicism in tumor and normal blood samples |
| Q35633682 | Ultrasensitive detection of rare mutations using next-generation targeted resequencing |
| Q33961117 | Uncovering the complexity of transcriptomes with RNA-Seq. |
| Q52613219 | Understanding sequencing data as compositions: an outlook and review. |
| Q52365663 | Use of a draft genome of coffee (Coffea arabica) to identify SNPs associated with caffeine content. |
| Q36201678 | Using ChIP-chip and ChIP-seq to study the regulation of gene expression: genome-wide localization studies reveal widespread regulation of transcription elongation |
| Q31131588 | Using RNA-Seq SNP data to reveal potential causal mutations related to pig production traits and RNA editing |
| Q58741660 | Using controls to limit false discovery in the era of big data |
| Q27008171 | Using familial information for variant filtering in high-throughput sequencing studies |
| Q35757264 | Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools |
| Q38695914 | Using metagenomics to investigate human and environmental resistomes |
| Q50558171 | Using non-uniform read distribution models to improve isoform expression inference in RNA-Seq. |
| Q30443758 | Using phage display selected antibodies to dissect microbiomes for complete de novo genome sequencing of low abundance microbes |
| Q39889588 | Using reads to annotate the genome: influence of length, background distribution, and sequence errors on prediction capacity |
| Q41094610 | VGLL4 Selectively Represses YAP-Dependent Gene Induction and Tumorigenic Phenotypes in Breast Cancer |
| Q34803591 | Variant discovery in targeted resequencing using whole genome amplified DNA. |
| Q42275546 | Variant identification in multi-sample pools by illumina genome analyzer sequencing |
| Q30936152 | ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering |
| Q41758916 | VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering |
| Q38396578 | Viral quasispecies |
| Q27016083 | Viral surveillance and discovery |
| Q37285925 | Virtual terminator nucleotides for next-generation DNA sequencing. |
| Q21136108 | Weakly positioned nucleosomes enhance the transcriptional competency of chromatin |
| Q33519703 | WebCARMA: a web application for the functional and taxonomic classification of unassembled metagenomic reads |
| Q35605189 | What are the determinants of gene expression levels and breadths in the human genome? |
| Q38209384 | What does next-generation sequencing mean for prenatal diagnosis? |
| Q37350828 | Whole genome sequencing of a single Bos taurus animal for single nucleotide polymorphism discovery |
| Q34080324 | Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection |
| Q28732084 | Winnowing DNA for rare sequences: highly specific sequence and methylation based enrichment |
| Q33970447 | ZINBA integrates local covariates with DNA-seq data to identify broad and narrow regions of enrichment, even within amplified genomic regions |
| Q34030518 | cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate |
| Q93196309 | gapFinisher: A reliable gap filling pipeline for SSPACE-LongRead scaffolder output |
| Q34571730 | miRNA expression profile analysis in kidney of different porcine breeds |
| Q43759417 | pIRS: Profile-based Illumina pair-end reads simulator |
| Q30316862 | plantDARIO: web based quantitative and qualitative analysis of small RNA-seq data in plants |
| Q38396444 | proovread: large-scale high-accuracy PacBio correction through iterative short read consensus |
| Q33605544 | rQuant.web: a tool for RNA-Seq-based transcript quantitation |
| Q33616397 | seqCNA: an R package for DNA copy number analysis in cancer using high-throughput sequencing. |
| Q36766590 | ve-SEQ: Robust, unbiased enrichment for streamlined detection and whole-genome sequencing of HCV and other highly diverse pathogens |
| Q41891172 | vipR: variant identification in pooled DNA using R. |
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