Model-based quality assessment and base-calling for second-generation sequencing data

scientific article

Model-based quality assessment and base-calling for second-generation sequencing data is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1111/J.1541-0420.2009.01353.X
P932PMC publication ID2888717
P698PubMed publication ID19912177
P5875ResearchGate publication ID38088158
P894zbMATH Open document ID1203.62182

P50authorRafael IrizarryQ39073664
Héctor Corrada BravoQ35703653
P2860cites workToward the 1,000 dollars human genome.Q36186955
An estimate of the crosstalk matrix in four-dye fluorescence-based DNA sequencingQ41682165
International genome project launched.Q53221818
The death of microarrays?Q59094468
Ultrafast and memory-efficient alignment of short DNA sequences to the human genomeQ21183894
Model-based analysis of ChIP-Seq (MACS)Q21183902
Mapping and quantifying mammalian transcriptomes by RNA-SeqQ22122035
Genome sequencing in microfabricated high-density picolitre reactorsQ24544260
Genome-wide analysis of transcription factor binding sites based on ChIP-Seq dataQ24595121
Genome-wide maps of chromatin state in pluripotent and lineage-committed cellsQ24632506
Mapping short DNA sequencing reads and calling variants using mapping quality scoresQ24644612
Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cellsQ24646863
RNA-seq: an assessment of technical reproducibility and comparison with gene expression arraysQ24655562
Base-calling of automated sequencer traces using phred. I. Accuracy assessmentQ27860665
A comparison of normalization methods for high density oligonucleotide array data based on variance and biasQ27860710
Accurate multiplex polony sequencing of an evolved bacterial genomeQ28265850
An introduction to ROC analysisQ29299877
Substantial biases in ultra-short read data sets from high-throughput DNA sequencingQ29617050
Genome-wide identification of in vivo protein-DNA binding sites from ChIP-Seq dataQ31169616
Probabilistic base calling of Solexa sequencing dataQ33375519
An integrated software system for analyzing ChIP-chip and ChIP-seq dataQ33382059
Alta-Cyclic: a self-optimizing base caller for next-generation sequencingQ34299405
P433issue3
P407language of work or nameEnglishQ1860
P6104maintained by WikiProjectWikiProject MathematicsQ8487137
P304page(s)665-674
P577publication date2010-09-01
P1433published inBiometricsQ2025724
P1476titleModel-based quality assessment and base-calling for second-generation sequencing data
P478volume66

Reverse relations

cites work (P2860)
Q34299351A platform-independent method for detecting errors in metagenomic sequencing data: DRISEE.
Q34179097All Your Base: a fast and accurate probabilistic approach to base calling
Q30586095BM-BC: a Bayesian method of base calling for Solexa sequence data
Q33881427BM-map: Bayesian mapping of multireads for next-generation sequencing data
Q21184009BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
Q37829810Base-calling for next-generation sequencing platforms
Q30731247BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution
Q42672459CLEVER: clique-enumerating variant finder
Q37615067Characterization of the Genomic Diversity of Norovirus in Linked Patients Using a Metagenomic Deep Sequencing Approach
Q34487751Commentary: Call for a Quality Standard for Sequence-Based Assays in Clinical Microbiology: Necessity for Quality Assessment of Sequences Used in Microbial Identification and Typing
Q28748746Development of a low bias method for characterizing viral populations using next generation sequencing technology
Q42102818Effective detection of rare variants in pooled DNA samples using Cross-pool tailcurve analysis
Q28713966Estimation of sequencing error rates in short reads
Q34096126Family-based association tests using genotype data with uncertainty
Q38249872Identifying and mitigating bias in next-generation sequencing methods for chromatin biology
Q34476783Improved base-calling and quality scores for 454 sequencing based on a Hurdle Poisson model
Q42838840Intensity normalization improves color calling in SOLiD sequencing
Q59351138Inter- and Intra-Host Nucleotide Variations in Hepatitis A Virus in Culture and Clinical Samples Detected by Next-Generation Sequencing
Q48444711John Storey by Mak H Craig
Q34314953MetaMicrobesOnline: phylogenomic analysis of microbial communities
Q38061737Next-generation sequencing in the clinic: promises and challenges
Q30720610Oligotyping: Differentiating between closely related microbial taxa using 16S rRNA gene data.
Q33767163Overcoming bias and systematic errors in next generation sequencing data
Q35167233Quake: quality-aware detection and correction of sequencing errors
Q34580821Robust Detection and Identification of Sparse Segments in Ultra-High Dimensional Data Analysis
Q34964688Searching for SNPs with cloud computing
Q34354210Short-read reading-frame predictors are not created equal: sequence error causes loss of signal
Q41863570Simultaneous mapping of multiple gene loci with pooled segregants
Q33757432Statistical Analyses of Next Generation Sequence Data: A Partial Overview
Q28728245Summarizing and correcting the GC content bias in high-throughput sequencing
Q91968519Systematic evaluation of library preparation methods and sequencing platforms for high-throughput whole genome bisulfite sequencing
Q30936152ViVaMBC: estimating viral sequence variation in complex populations from illumina deep-sequencing data using model-based clustering
Q33641952Visualization and probability-based scoring of structural variants within repetitive sequences
Q35780165pre-miRNA profiles obtained through application of locked nucleic acids and deep sequencing reveals complex 5'/3' arm variation including concomitant cleavage and polyuridylation patterns

Search more.