| review article | Q7318358 |
| scholarly article | Q13442814 |
| P356 | DOI | 10.1534/GENETICS.113.153262 |
| P8608 | Fatcat ID | release_yamahgcihjh2pfgguxnhf7bhyu |
| P932 | PMC publication ID | 3761317 |
| P698 | PubMed publication ID | 24018767 |
| P5875 | ResearchGate publication ID | 256481090 |
| P50 | author | Carl G de Boer | Q47503100 |
| P2093 | author name string | Timothy R Hughes | |
| P2860 | cites work | Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system | Q21092736 |
| Mapping and quantifying mammalian transcriptomes by RNA-Seq | Q22122035 | ||
| Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene | Q22122492 | ||
| DNA-binding properties of ARID family proteins | Q24557439 | ||
| Genome-wide analysis of transcription factor binding sites based on ChIP-Seq data | Q24595121 | ||
| Wisdom of crowds for robust gene network inference | Q24604615 | ||
| NCBI GEO: archive for functional genomics data sets--10 years on | Q24610731 | ||
| ScerTF: a comprehensive database of benchmarked position weight matrices for Saccharomyces species | Q24622368 | ||
| General regulatory factors (GRFs) as genome partitioners | Q74676252 | ||
| Promoter elements regulate cytoplasmic mRNA decay | Q83129997 | ||
| A catalogue of eukaryotic transcription factor types, their evolutionary origin, and species distribution | Q84071290 | ||
| YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities | Q24623237 | ||
| The transcriptional landscape of the yeast genome defined by RNA sequencing | Q24633693 | ||
| Cluster analysis and display of genome-wide expression patterns | Q24644463 | ||
| Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization | Q24657378 | ||
| Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data | Q24798371 | ||
| Global nucleosome occupancy in yeast | Q24801575 | ||
| Global analysis of protein localization in budding yeast | Q27653962 | ||
| Crystal structure of the yeast MATalpha2/MCM1/DNA ternary complex | Q27748897 | ||
| Global analysis of protein expression in yeast | Q27860658 | ||
| Genomic expression programs in the response of yeast cells to environmental changes | Q27860823 | ||
| Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
| Life with 6000 genes | Q27860877 | ||
| High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
| Nascent transcript sequencing visualizes transcription at nucleotide resolution | Q27930489 | ||
| Antisense RNA stabilization induces transcriptional gene silencing via histone deacetylation in S. cerevisiae. | Q27930683 | ||
| Ordered recruitment of transcription and chromatin remodeling factors to a cell cycle- and developmentally regulated promoter. | Q27930916 | ||
| Single-molecule mRNA decay measurements reveal promoter- regulated mRNA stability in yeast | Q27931030 | ||
| Regulation of gene expression by a metabolic enzyme | Q27931504 | ||
| Vhr1p, a new transcription factor from budding yeast, regulates biotin-dependent expression of VHT1 and BIO5. | Q27931548 | ||
| Sfp1 is a stress- and nutrient-sensitive regulator of ribosomal protein gene expression | Q27931583 | ||
| Forkhead proteins control the outcome of transcription factor binding by antiactivation | Q27931709 | ||
| Transcription of two long noncoding RNAs mediates mating-type control of gametogenesis in budding yeast | Q27932603 | ||
| Stb3 binds to ribosomal RNA processing element motifs that control transcriptional responses to growth in Saccharomyces cerevisiae | Q27932998 | ||
| Essential role for the SANT domain in the functioning of multiple chromatin remodeling enzymes | Q27933003 | ||
| Remodeling of yeast genome expression in response to environmental changes | Q27933130 | ||
| A general strategy to uncover transcription factor properties identifies a new regulator of drug resistance in yeast. | Q27933644 | ||
| A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters | Q27933656 | ||
| RSC, an essential, abundant chromatin-remodeling complex | Q27933821 | ||
| Transcriptional regulatory code of a eukaryotic genome | Q27933887 | ||
| Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association | Q27933908 | ||
| High-resolution DNA-binding specificity analysis of yeast transcription factors | Q27933913 | ||
| Regulation of the mating pheromone and invasive growth responses in yeast by two MAP kinase substrates | Q27934375 | ||
| Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome | Q27934482 | ||
| A repressor (MAT alpha 2 Product) and its operator control expression of a set of cell type specific genes in yeast | Q27935499 | ||
| Target hub proteins serve as master regulators of development in yeast | Q27936046 | ||
| Dynamic reprogramming of transcription factors to and from the subtelomere | Q27936430 | ||
| Two novel targets of the MAP kinase Kss1 are negative regulators of invasive growth in the yeast Saccharomyces cerevisiae | Q27936493 | ||
| Identifying transcription factor functions and targets by phenotypic activation | Q27936626 | ||
| De novo identification and biophysical characterization of transcription-factor binding sites with microfluidic affinity analysis | Q27936961 | ||
| Rpn4p acts as a transcription factor by binding to PACE, a nonamer box found upstream of 26S proteasomal and other genes in yeast | Q27936972 | ||
| Environment-responsive transcription factors bind subtelomeric elements and regulate gene silencing | Q27937285 | ||
| The Saccharomyces cerevisiae DAL80 repressor protein binds to multiple copies of GATAA-containing sequences (URSGATA). | Q27937517 | ||
| GCN4 protein, a positive transcription factor in yeast, binds general control promoters at all 5' TGACTC 3' sequences | Q27937847 | ||
| Yeast TFIID serves as a coactivator for Rap1p by direct protein-protein interaction | Q27938360 | ||
| Perturbation-based analysis and modeling of combinatorial regulation in the yeast sulfur assimilation pathway | Q27938457 | ||
| Analysis of transcriptional activation at a distance in Saccharomyces cerevisiae | Q27938498 | ||
| Functional discovery via a compendium of expression profiles | Q27938962 | ||
| Distinguishing direct versus indirect transcription factor-DNA interactions | Q27939876 | ||
| Genome-wide location and function of DNA binding proteins | Q28131765 | ||
| Systematic determination of genetic network architecture | Q28138580 | ||
| Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae | Q28145700 | ||
| Identifying regulatory networks by combinatorial analysis of promoter elements | Q28215713 | ||
| Assessing computational tools for the discovery of transcription factor binding sites | Q28301463 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Widespread bidirectional promoters are the major source of cryptic transcripts in yeast | Q28307664 | ||
| An artificial transcription activator mimics the genome-wide properties of the yeast Pdr1 transcription factor | Q28367270 | ||
| A predictive model of the oxygen and heme regulatory network in yeast | Q28473966 | ||
| TFCat: the curated catalog of mouse and human transcription factors | Q28752619 | ||
| Compact, universal DNA microarrays to comprehensively determine transcription-factor binding site specificities | Q29301030 | ||
| Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF | Q29547783 | ||
| Transcriptional profiling shows that Gcn4p is a master regulator of gene expression during amino acid starvation in yeast | Q29614487 | ||
| Bidirectional promoters generate pervasive transcription in yeast | Q29614766 | ||
| Integrated genomic and proteomic analyses of a systematically perturbed metabolic network | Q29616021 | ||
| Substantial biases in ultra-short read data sets from high-throughput DNA sequencing | Q29617050 | ||
| Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
| The chemical genomic portrait of yeast: uncovering a phenotype for all genes | Q29617970 | ||
| Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing | Q29618021 | ||
| Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data | Q29618517 | ||
| Genetic dissection of transcriptional regulation in budding yeast | Q29618883 | ||
| RNA regulons: coordination of post-transcriptional events | Q29618919 | ||
| Diversity and complexity in DNA recognition by transcription factors | Q29619632 | ||
| Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles | Q29620701 | ||
| A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data | Q30000980 | ||
| A high-resolution map of transcription in the yeast genome | Q30014822 | ||
| Connecting protein structure with predictions of regulatory sites. | Q30361132 | ||
| An improved map of conserved regulatory sites for Saccharomyces cerevisiae | Q30477138 | ||
| Analysis of large-scale gene expression data | Q30587160 | ||
| W-AlignACE: an improved Gibbs sampling algorithm based on more accurate position weight matrices learned from sequence and gene expression/ChIP-chip data | Q31149014 | ||
| Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks | Q31159122 | ||
| Composition and conservation of the telomeric complex | Q33195151 | ||
| Uncovering a hidden distributed architecture behind scale-free transcriptional regulatory networks | Q33244920 | ||
| Binding site graphs: a new graph theoretical framework for prediction of transcription factor binding sites | Q33284530 | ||
| Gene-environment interaction in yeast gene expression | Q33328631 | ||
| Inferring condition-specific modulation of transcription factor activity in yeast through regulon-based analysis of genomewide expression | Q33366448 | ||
| Analysis of combinatorial cis-regulation in synthetic and genomic promoters | Q33386730 | ||
| Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast | Q33395820 | ||
| Saccharomyces Genome Database provides mutant phenotype data. | Q33515788 | ||
| Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets | Q33553004 | ||
| A systems approach to mapping DNA damage response pathways | Q33609206 | ||
| Dissection of combinatorial control by the Met4 transcriptional complex | Q33623809 | ||
| Intrinsic histone-DNA interactions are not the major determinant of nucleosome positions in vivo | Q33659597 | ||
| Structure and function of the interferon-beta enhanceosome | Q33671579 | ||
| Diversity of eukaryotic DNA replication origins revealed by genome-wide analysis of chromatin structure | Q33686941 | ||
| Fundamentally different logic of gene regulation in eukaryotes and prokaryotes | Q33691046 | ||
| Identification of Transcription Factor-DNA Interactions In Vivo | Q33737762 | ||
| The landscape of genetic complexity across 5,700 gene expression traits in yeast | Q33818641 | ||
| Natural selection on cis and trans regulation in yeasts | Q33881377 | ||
| Multiplexed massively parallel SELEX for characterization of human transcription factor binding specificities | Q33881396 | ||
| Genomewide identification of Sko1 target promoters reveals a regulatory network that operates in response to osmotic stress in Saccharomyces cerevisiae | Q33995626 | ||
| Genetic landscape of open chromatin in yeast. | Q34035574 | ||
| Epigenome characterization at single base-pair resolution. | Q34057123 | ||
| Curated collection of yeast transcription factor DNA binding specificity data reveals novel structural and gene regulatory insights | Q34107923 | ||
| Chromatin regulators as capacitors of interspecies variations in gene expression | Q34152568 | ||
| Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution | Q34239260 | ||
| Identifying the genetic determinants of transcription factor activity | Q34240842 | ||
| Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters | Q34276083 | ||
| Cooperativity in transcriptional control | Q34286208 | ||
| Genome-wide analysis of mRNA stability using transcription inhibitors and microarrays reveals posttranscriptional control of ribosome biogenesis factors | Q34347704 | ||
| Genomic analysis of regulatory network dynamics reveals large topological changes | Q34348943 | ||
| Genome-scale identification of nucleosome positions in S. cerevisiae | Q34427114 | ||
| STUDIES ON THE MECHANISM OF REPRESSION OF ARGININE BIOSYNTHESIS IN ESCHERICHIA COLI. II. DOMINANCE OF REPRESSIBILITY IN DIPLOIDS. | Q34540960 | ||
| Identifying regulatory mechanisms using individual variation reveals key role for chromatin modification | Q34565625 | ||
| Transcriptional noise and the fidelity of initiation by RNA polymerase II. | Q34574799 | ||
| The HMG-box: a versatile protein domain occurring in a wide variety of DNA-binding proteins | Q34643061 | ||
| A high-resolution atlas of nucleosome occupancy in yeast | Q34688532 | ||
| Antisense expression increases gene expression variability and locus interdependency | Q34715161 | ||
| Extensive role of the general regulatory factors, Abf1 and Rap1, in determining genome-wide chromatin structure in budding yeast | Q34723685 | ||
| Genome-wide transcription factor binding: beyond direct target regulation | Q34744392 | ||
| Extensive low-affinity transcriptional interactions in the yeast genome | Q34881942 | ||
| The DNA-encoded nucleosome organization of a eukaryotic genome | Q34907179 | ||
| From DNA sequence to transcriptional behaviour: a quantitative approach | Q34985690 | ||
| Direct measurement of DNA affinity landscapes on a high-throughput sequencing instrument | Q41766380 | ||
| A RSC/nucleosome complex determines chromatin architecture and facilitates activator binding | Q41783832 | ||
| Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins | Q41836932 | ||
| Incorporating nucleosomes into thermodynamic models of transcription regulation | Q41909104 | ||
| A comprehensive genomic binding map of gene and chromatin regulatory proteins in Saccharomyces | Q41957756 | ||
| Gene loops enhance transcriptional directionality | Q42065524 | ||
| Transcription factor effector domains | Q42155239 | ||
| Calling Cards enable multiplexed identification of the genomic targets of DNA-binding proteins | Q42175477 | ||
| Quantitative analysis demonstrates most transcription factors require only simple models of specificity | Q42183685 | ||
| Comparative dynamic transcriptome analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation | Q42236163 | ||
| SwissRegulon: a database of genome-wide annotations of regulatory sites | Q42288189 | ||
| Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae | Q42410972 | ||
| Epigenetic regulation and the variability of gene expression | Q42524120 | ||
| Removal of positioned nucleosomes from the yeast PHO5 promoter upon PHO5 induction releases additional upstream activating DNA elements. | Q42573541 | ||
| Antisense transcription controls cell fate in Saccharomyces cerevisiae | Q42603749 | ||
| RPC19, the gene for a subunit common to yeast RNA polymerases A (I) and C (III). | Q42622667 | ||
| A canonical promoter organization of the transcription machinery and its regulators in the Saccharomyces genome | Q43155322 | ||
| A bacterial one-hybrid system for determining the DNA-binding specificity of transcription factors | Q43159884 | ||
| Identifying cooperative transcription factors by combining ChIP-chip data and knockout data. | Q43941881 | ||
| Activator-specific recruitment of TFIID and regulation of ribosomal protein genes in yeast | Q43975761 | ||
| Predicting genetic regulatory response using classification. | Q45966722 | ||
| A yeast hybrid provides insight into the evolution of gene expression regulation. | Q46029723 | ||
| A ncRNA modulates histone modification and mRNA induction in the yeast GAL gene cluster | Q46210954 | ||
| Coordinate regulation of multiple and distinct biosynthetic pathways by TOR and PKA kinases in S. cerevisiae | Q46883144 | ||
| Exploring the functional landscape of gene expression: directed search of large microarray compendia | Q47597449 | ||
| Predicting gene expression from sequence | Q47765918 | ||
| XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast. | Q51547969 | ||
| Promoter region-based classification of genes. | Q52066726 | ||
| Evidence for nucleosome depletion at active regulatory regions genome-wide | Q54998820 | ||
| Enrichment and aggregation of topological motifs are independent organizational principles of integrated interaction networks | Q57863536 | ||
| HAP1 positive control mutants specific for one of two binding sites | Q67504421 | ||
| Overproduction of the yeast STE12 protein leads to constitutive transcriptional induction | Q68521501 | ||
| A model for the cooperative binding of eukaryotic regulatory proteins to nucleosomal target sites | Q71093565 | ||
| Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes | Q73516984 | ||
| Specific interactions of the telomeric protein Rap1p with nucleosomal binding sites | Q73584964 | ||
| Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors | Q73747425 | ||
| Genome-wide expression monitoring in Saccharomyces cerevisiae | Q73989151 | ||
| Mapping accessible chromatin regions using Sono-Seq | Q34999369 | ||
| Bind-n-Seq: high-throughput analysis of in vitro protein-DNA interactions using massively parallel sequencing. | Q35008732 | ||
| Controlling integration specificity of a yeast retrotransposon | Q35022347 | ||
| Hotspots of transcription factor colocalization in the genome of Drosophila melanogaster | Q35033165 | ||
| Multiple sequence-specific factors generate the nucleosome-depleted region on CLN2 promoter. | Q35058171 | ||
| Genomic analysis of the hierarchical structure of regulatory networks | Q35075442 | ||
| Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. | Q35079119 | ||
| The different (sur)faces of Rap1p. | Q35091508 | ||
| Genome-wide characterization of the Zap1p zinc-responsive regulon in yeast | Q35172925 | ||
| Repression of ADH1 and ADH3 during zinc deficiency by Zap1-induced intergenic RNA transcripts. | Q35222259 | ||
| Global regulators of chromosome function in yeast | Q35534775 | ||
| Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. | Q35542072 | ||
| The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding | Q35557755 | ||
| Chromatin and transcription in yeast | Q35748234 | ||
| Evolutionary origins of transcription factor binding site clusters | Q35753857 | ||
| Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function | Q35926498 | ||
| Characterizing the roles of Met31 and Met32 in coordinating Met4-activated transcription in the absence of Met30. | Q35953852 | ||
| Transcriptional networks: reverse-engineering gene regulation on a global scale | Q35958192 | ||
| Combinatorial control of diverse metabolic and physiological functions by transcriptional regulators of the yeast sulfur assimilation pathway | Q36128010 | ||
| Everything you ever wanted to know about Saccharomyces cerevisiae telomeres: beginning to end. | Q36154367 | ||
| Predicting gene expression from sequence: a reexamination | Q36176162 | ||
| Purification and cloning of a DNA binding protein from yeast that binds to both silencer and activator elements | Q36447444 | ||
| TransfactomeDB: a resource for exploring the nucleotide sequence specificity and condition-specific regulatory activity of trans-acting factors | Q36454295 | ||
| Characterization of differentiated quiescent and nonquiescent cells in yeast stationary-phase cultures. | Q36488975 | ||
| Nucleosome displacement in transcription | Q36554288 | ||
| A nucleosome-positioning sequence is required for GCN4 to activate transcription in the absence of a TATA element | Q36720828 | ||
| Chromatin decouples promoter threshold from dynamic range | Q36732068 | ||
| Predictive modeling of genome-wide mRNA expression: from modules to molecules | Q36740482 | ||
| Why are there still over 1000 uncharacterized yeast genes? | Q36792289 | ||
| Rapid glucocorticoid receptor exchange at a promoter is coupled to transcription and regulated by chaperones and proteasomes | Q37011300 | ||
| Non-DNA-binding cofactors enhance DNA-binding specificity of a transcriptional regulatory complex. | Q37080834 | ||
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting | Q37157318 | ||
| Mechanisms that specify promoter nucleosome location and identity | Q37180651 | ||
| Backup in gene regulatory networks explains differences between binding and knockout results. | Q37262265 | ||
| Transcriptional regulatory circuits: predicting numbers from alphabets | Q37349865 | ||
| Toggle involving cis-interfering noncoding RNAs controls variegated gene expression in yeast | Q37416625 | ||
| An ensemble model of competitive multi-factor binding of the genome | Q37417297 | ||
| Naturally occurring poly(dA-dT) sequences are upstream promoter elements for constitutive transcription in yeast | Q37539289 | ||
| Global chromatin structure of 45,000 base pairs of chromosome III in a- and alpha-cell yeast and during mating-type switching | Q37598813 | ||
| Shifting players and paradigms in cell-specific transcription | Q37671910 | ||
| Conserved expression without conserved regulatory sequence: the more things change, the more they stay the same | Q37677317 | ||
| Poly(dA:dT), a ubiquitous promoter element that stimulates transcription via its intrinsic DNA structure. | Q37697997 | ||
| Determining the specificity of protein-DNA interactions | Q37793836 | ||
| Methods for Analysis of Transcription Factor DNA-Binding Specificity In Vitro | Q37873862 | ||
| Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae | Q38288284 | ||
| Binding of disparate transcriptional activators to nucleosomal DNA is inherently cooperative | Q38298166 | ||
| Calling cards for DNA-binding proteins. | Q38300132 | ||
| Genetic reconstruction of a functional transcriptional regulatory network | Q38302919 | ||
| Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase | Q38304511 | ||
| Reconstructing dynamic regulatory maps | Q38305740 | ||
| A systems approach to measuring the binding energy landscapes of transcription factors | Q38305871 | ||
| High-resolution computational models of genome binding events. | Q38310716 | ||
| A molecular mechanism for combinatorial control in yeast: MCM1 protein sets the spacing and orientation of the homeodomains of an alpha 2 dimer | Q38331096 | ||
| Epistatic relationships reveal the functional organization of yeast transcription factors | Q38339973 | ||
| Genetic analysis of variation in transcription factor binding in yeast | Q38345613 | ||
| Inferring transcription factor targets from gene expression changes and predicted promoter occupancy | Q38356868 | ||
| Evolutionary divergence of intrinsic and trans-regulated nucleosome positioning sequences reveals plastic rules for chromatin organization | Q38894492 | ||
| Chromatin opening and transactivator potentiation by RAP1 in Saccharomyces cerevisiae | Q39446550 | ||
| The discrepancy between chromatin factor location and effect. | Q39619277 | ||
| Whole-genome comparison of Leu3 binding in vitro and in vivo reveals the importance of nucleosome occupancy in target site selection. | Q39983632 | ||
| Bacterial regulation: global regulatory networks | Q40080349 | ||
| The specificity and topology of chromatin interaction pathways in yeast | Q40792982 | ||
| How does the GAL4 transcription factor recognize the appropriate DNA binding sites in vivo? | Q40816720 | ||
| Experimental annotation of the human genome using microarray technology | Q40822597 | ||
| Global regulators of ribosome biosynthesis in yeast | Q41043631 | ||
| Review: compilation and characteristics of dedicated transcription factors in Saccharomyces cerevisiae | Q41072677 | ||
| Divergence of nucleosome positioning between two closely related yeast species: genetic basis and functional consequences | Q41330259 | ||
| P433 | issue | 1 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | gene regulatory network | Q1502576 |
| eukaryote | Q19088 | ||
| yeast | Q45422 | ||
| P1104 | number of pages | 28 | |
| P304 | page(s) | 9-36 | |
| P577 | publication date | 2013-09-01 | |
| P1433 | published in | Genetics | Q3100575 |
| P1476 | title | Mapping yeast transcriptional networks | |
| P478 | volume | 195 |
| Q38537226 | "Hit-and-Run" leaves its mark: catalyst transcription factors and chromatin modification. |
| Q91615990 | A Bright IDEA |
| Q42291798 | A prior-based integrative framework for functional transcriptional regulatory network inference |
| Q40312082 | An experimentally supported model of the Bacillus subtilis global transcriptional regulatory network. |
| Q104459167 | Autoregulation of yeast ribosomal proteins discovered by efficient search for feedback regulation |
| Q28544794 | ChIP-seq and in vivo transcriptome analyses of the Aspergillus fumigatus SREBP SrbA reveals a new regulator of the fungal hypoxia response and virulence |
| Q36443360 | Characterization of a cAMP responsive transcription factor, Cmr (Rv1675c), in TB complex mycobacteria reveals overlap with the DosR (DevR) dormancy regulon |
| Q36648728 | Combinatorial Cis-regulation in Saccharomyces Species |
| Q46746486 | Controllability analysis of transcriptional regulatory networks reveals circular control patterns among transcription factors |
| Q91621291 | Deciphering eukaryotic gene-regulatory logic with 100 million random promoters |
| Q37687833 | Discovering functions of unannotated genes from a transcriptome survey of wild fungal isolates |
| Q90067762 | Diverse DNA Sequence Motifs Activate Meiotic Recombination Hotspots Through a Common Chromatin Remodeling Pathway |
| Q49538360 | Dynamic motif occupancy (DynaMO) analysis identifies transcription factors and their binding sites driving dynamic biological processes. |
| Q38684202 | Functional Profiling of Transcription Factor Genes in Neurospora crassa |
| Q27972592 | Genome-Wide Identification of the Target Genes of AP2-O, a Plasmodium AP2-Family Transcription Factor |
| Q27933711 | Genome-Wide Mapping of Binding Sites Reveals Multiple Biological Functions of the Transcription Factor Cst6p in Saccharomyces cerevisiae |
| Q51416565 | Genome-wide determinants of sequence-specific DNA binding of general regulatory factors. |
| Q36132260 | High-Resolution Global Analysis of the Influences of Bas1 and Ino4 Transcription Factors on Meiotic DNA Break Distributions in Saccharomyces cerevisiae |
| Q33925785 | Hit-and-run transcriptional control by bZIP1 mediates rapid nutrient signaling in Arabidopsis |
| Q46051331 | How transcription circuits explore alternative architectures while maintaining overall circuit output |
| Q36958129 | Identification and Characterization of a cis-Regulatory Element for Zygotic Gene Expression in Chlamydomonas reinhardtii. |
| Q38763605 | Inference and Evolutionary Analysis of Genome-Scale Regulatory Networks in Large Phylogenies |
| Q39897181 | Intracellular Action of a Secreted Peptide Required for Fungal Virulence |
| Q37028150 | Investigating the Combinatory Effects of Biological Networks on Gene Co-expression |
| Q49958749 | Ixr1 Regulates Ribosomal Gene Transcription and Yeast Response to Cisplatin. |
| Q38976283 | Past Roadblocks and New Opportunities in Transcription Factor Network Mapping. |
| Q64991934 | Predictive models of eukaryotic transcriptional regulation reveals changes in transcription factor roles and promoter usage between metabolic conditions. |
| Q50093720 | Protective ability of subcellular extracts from Salmonella Enteritidis and from a rough isogenic mutant against salmonellosis in mice. |
| Q59830714 | Reconstruction of a Global Transcriptional Regulatory Network for Control of Lipid Metabolism in Yeast by Using Chromatin Immunoprecipitation with Lambda Exonuclease Digestion |
| Q37735455 | Role of Ectopic Gene Conversion in the Evolution of a Candida krusei Pleiotropic Drug Resistance Transporter Family. |
| Q35770624 | Role of intragenic binding of cAMP responsive protein (CRP) in regulation of the succinate dehydrogenase genes Rv0249c-Rv0247c in TB complex mycobacteria |
| Q30699640 | Saccharomyces genome database provides new regulation data |
| Q57909382 | Systems biology: Supplementation is not sufficient |
| Q39199069 | The Upsides and Downsides of Organelle Interconnectivity |
| Q89983295 | Transient genome-wide interactions of the master transcription factor NLP7 initiate a rapid nitrogen-response cascade |
| Q40425532 | Utilising established SDL-screening methods as a tool for the functional genomic characterisation of model and non-model organisms |
Search more.