| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1025890856 |
| P356 | DOI | 10.1038/NATURE08934 |
| P932 | PMC publication ID | 2941147 |
| P698 | PubMed publication ID | 20237471 |
| P5875 | ResearchGate publication ID | 42255518 |
| P50 | author | Michael P. Snyder | Q28924918 |
| Lars M Steinmetz | Q55154863 | ||
| P2093 | author name string | Wei Zheng | |
| Hongyu Zhao | |||
| Eugenio Mancera | |||
| P2860 | cites work | Model-based analysis of ChIP-Seq (MACS) | Q21183902 |
| Species-specific transcription in mice carrying human chromosome 21 | Q22065859 | ||
| Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles | Q24536351 | ||
| Cluster analysis and display of genome-wide expression patterns | Q24644463 | ||
| FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast | Q24655968 | ||
| Local regulatory variation in Saccharomyces cerevisiae | Q24815011 | ||
| Saccharomyces cerevisiae S288C has a mutation in FLO8, a gene required for filamentous growth | Q27933236 | ||
| Conserved homeodomain proteins interact with MADS box protein Mcm1 to restrict ECB-dependent transcription to the M/G1 phase of the cell cycle | Q27933560 | ||
| Target hub proteins serve as master regulators of development in yeast | Q27936046 | ||
| Induction of pseudohyphal growth by overexpression of PHD1, a Saccharomyces cerevisiae gene related to transcriptional regulators of fungal development | Q27937284 | ||
| High-resolution mapping of meiotic crossovers and non-crossovers in yeast | Q27938210 | ||
| MAP kinase and cAMP filamentation signaling pathways converge on the unusually large promoter of the yeast FLO11 gene | Q27940377 | ||
| Evolution at two levels in humans and chimpanzees | Q28141105 | ||
| Chromatin immunoprecipitation for determining the association of proteins with specific genomic sequences in vivo | Q28266357 | ||
| PeakSeq enables systematic scoring of ChIP-seq experiments relative to controls | Q28305773 | ||
| Genetics of gene expression surveyed in maize, mouse and man | Q29617297 | ||
| Genetic analysis of genome-wide variation in human gene expression | Q29617852 | ||
| Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing | Q29618021 | ||
| Genetic dissection of transcriptional regulation in budding yeast | Q29618883 | ||
| Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles | Q29620701 | ||
| An improved map of conserved regulatory sites for Saccharomyces cerevisiae | Q30477138 | ||
| Mapping determinants of gene expression plasticity by genetical genomics in C. elegans | Q33267908 | ||
| Efficient yeast ChIP-Seq using multiplex short-read DNA sequencing | Q33401685 | ||
| Divergence of transcription factor binding sites across related yeast species | Q34661726 | ||
| Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. | Q35914298 | ||
| Large-scale analysis of yeast filamentous growth by systematic gene disruption and overexpression. | Q36325980 | ||
| Genetics of global gene expression | Q36626609 | ||
| Molecular cloning and analysis of the dominant flocculation gene FLO8 from Saccharomyces cerevisiae | Q36813654 | ||
| Dynamic and complex transcription factor binding during an inducible response in yeast | Q37240568 | ||
| Relative contributions of MCM1 and STE12 to transcriptional activation of a- and alpha-specific genes from Saccharomyces cerevisiae | Q45305989 | ||
| TAMO: a flexible, object-oriented framework for analyzing transcriptional regulation using DNA-sequence motifs | Q48137256 | ||
| Searching for the genome's second code | Q52086437 | ||
| Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors | Q73747425 | ||
| P433 | issue | 7292 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 5 | |
| P304 | page(s) | 1187-1191 | |
| P577 | publication date | 2010-03-17 | |
| P1433 | published in | Nature | Q180445 |
| P1476 | title | Genetic analysis of variation in transcription factor binding in yeast | |
| P478 | volume | 464 |
| Q37256708 | A Novel Test for Selection on cis-Regulatory Elements Reveals Positive and Negative Selection Acting on Mammalian Transcriptional Enhancers |
| Q33991900 | A Statistical Framework for eQTL Mapping Using RNA‐seq Data |
| Q51543538 | A computational pipeline for comparative ChIP-seq analyses |
| Q41016841 | Addressing false discoveries in network inference |
| Q21061190 | Analysis of variation at transcription factor binding sites in Drosophila and humans |
| Q26862414 | Beyond the ENCODE project: using genomics and epigenomics strategies to study enhancer evolution |
| Q34561899 | Centromere-like regions in the budding yeast genome |
| Q51417627 | ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation |
| Q34644399 | ChIP–seq and beyond: new and improved methodologies to detect and characterize protein–DNA interactions |
| Q34012041 | Characterizing a collective and dynamic component of chromatin immunoprecipitation enrichment profiles in yeast |
| Q29032100 | Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence |
| Q34341620 | Coevolution within a transcriptional network by compensatory trans and cis mutations. |
| Q35091271 | Coherent functional modules improve transcription factor target identification, cooperativity prediction, and disease association |
| Q34182463 | Contribution of transcription factor binding site motif variants to condition-specific gene expression patterns in budding yeast |
| Q35164635 | Cooperative transcription factor associations discovered using regulatory variation |
| Q35989433 | Coordinated Evolution of Transcriptional and Post-Transcriptional Regulation for Mitochondrial Functions in Yeast Strains |
| Q42410972 | Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae |
| Q33848577 | Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites |
| Q21184030 | DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines |
| Q36408973 | DNase I sensitivity QTLs are a major determinant of human expression variation |
| Q34695037 | De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets |
| Q35630182 | Detecting differential binding of transcription factors with ChIP-seq |
| Q38770679 | Disruption of the gene C12orf35 leads to increased productivities in recombinant CHO cell lines |
| Q24600903 | Divergence in a master variator generates distinct phenotypes and transcriptional responses |
| Q42683249 | Dramatic changes in transcription factor binding over evolutionary time |
| Q54963126 | Dynamic evolution of regulatory element ensembles in primate CD4+ T cells. |
| Q37269829 | Early colony establishment in Neurospora crassa requires a MAP kinase regulatory network. |
| Q36222765 | Evolution of Transcription Networks — Lessons from Yeasts |
| Q42317737 | Evolution of transcript modification by N6-methyladenosine in primates |
| Q34245588 | Evolution of transcription factor binding in metazoans - mechanisms and functional implications |
| Q35557677 | Extensive characterization of NF-κB binding uncovers non-canonical motifs and advances the interpretation of genetic functional traits. |
| Q21090201 | Extensive divergence of transcription factor binding in Drosophila embryos with highly conserved gene expression |
| Q33823781 | Extensive variation in chromatin states across humans |
| Q90297620 | GPD1 and ADH3 Natural Variants Underlie Glycerol Yield Differences in Wine Fermentation |
| Q48245815 | Genetic characterization and modification of a bioethanol-producing yeast strain. |
| Q34035574 | Genetic landscape of open chromatin in yeast. |
| Q45073429 | Genetic variation in Dip5, an amino acid permease, and Pdr5, a multiple drug transporter, regulates glyphosate resistance in S. cerevisiae. |
| Q34390588 | Genetics and regulatory impact of alternative polyadenylation in human B-lymphoblastoid cells |
| Q37871502 | Genome-wide approaches to the study of adaptive gene expression evolution: systematic studies of evolutionary adaptations involving gene expression will allow many fundamental questions in evolutionary biology to be addressed |
| Q34758225 | Global Properties and Functional Complexity of Human Gene Regulatory Variation |
| Q35248894 | Global analysis of transcription factor-binding sites in yeast using ChIP-Seq. |
| Q40869564 | Heterogeneous expression of the virulence-related adhesin Epa1 between individual cells and strains of the pathogen Candida glabrata |
| Q51872521 | High conservation of transcription factor binding and evidence for combinatorial regulation across six Drosophila species |
| Q34797785 | Higher-order genetic interactions and their contribution to complex traits |
| Q99365611 | Hypoxia-mediated regulation of mitochondrial transcription factors in renal epithelial cells: implications for hypertensive renal physiology |
| Q30663573 | Identification of transcription factor binding sites from ChIP-seq data at high resolution |
| Q42665464 | Identifying ChIP-seq enrichment using MACS. |
| Q35080649 | Identifying functional transcription factor binding sites in yeast by considering their positional preference in the promoters |
| Q36770462 | Identifying genetic modulators of the connectivity between transcription factors and their transcriptional targets |
| Q39782345 | Illuminating transcription pathways using fluorescent reporter genes and yeast functional genomics |
| Q35458609 | Inferring regulatory mechanisms from patterns of evolutionary divergence |
| Q92033325 | Insights about collective decision-making at the genetic level |
| Q38206761 | Insights into molecular evolution from yeast genomics |
| Q35079119 | Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. |
| Q35625871 | Is this the right normalization? A diagnostic tool for ChIP-seq normalization. |
| Q34382839 | Is transcription factor binding site turnover a sufficient explanation for cis-regulatory sequence divergence? |
| Q92490107 | MCHM Acts as a Hydrotrope, Altering the Balance of Metals in Yeast |
| Q37142704 | Mapping yeast transcriptional networks |
| Q28082759 | Mechanisms of mutational robustness in transcriptional regulation |
| Q33995474 | Needles in stacks of needles: finding disease-causal variants in a wealth of genomic data |
| Q37498825 | Non-coding single nucleotide variants affecting estrogen receptor binding and activity |
| Q42110668 | Nonspecific Protein-DNA Binding Is Widespread in the Yeast Genome |
| Q34376050 | Normalization of ChIP-seq data with control |
| Q39232183 | Optimizing ChIP-seq peak detectors using visual labels and supervised machine learning |
| Q21133922 | PPARG Binding Landscapes in Macrophages Suggest a Genome-Wide Contribution of PU.1 to Divergent PPARG Binding in Human and Mouse |
| Q35573179 | Pervasive variation of transcription factor orthologs contributes to regulatory network evolution. |
| Q36958965 | Pluralistic and stochastic gene regulation: examples, models and consistent theory. |
| Q50783089 | Population genetics of cis‐regulatory sequences that operate during embryonic development in the sea urchin Strongylocentrotus purpuratus |
| Q36935368 | Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains |
| Q37341564 | Population perspectives on functional genomic variation in yeast. |
| Q45066478 | Proteomic and genetic analysis of the response of S. cerevisiae to soluble copper leads to improvement of the antimicrobial function of cellulosic copper nanoparticles |
| Q30421087 | RNA-Seq Approach for Genetic Improvement of Meat Quality in Pig and Evolutionary Insight into the Substrate Specificity of Animal Carbonyl Reductases |
| Q36132367 | Regulatory Rewiring in a Cross Causes Extensive Genetic Heterogeneity |
| Q38166297 | Revisiting Mortimer's Genome Renewal Hypothesis: heterozygosity, homothallism, and the potential for adaptation in yeast. |
| Q38367031 | Role of transcriptional regulation in the evolution of plant phenotype: A dynamic systems approach |
| Q30699640 | Saccharomyces genome database provides new regulation data |
| Q41825385 | Set5 and Set1 cooperate to repress gene expression at telomeres and retrotransposons |
| Q34650039 | Statistical analysis reveals co-expression patterns of many pairs of genes in yeast are jointly regulated by interacting loci |
| Q30566297 | Statistical approaches to use a model organism for regulatory sequences annotation of newly sequenced species |
| Q34082999 | Ste11p MEKK signals through HOG, mating, calcineurin and PKC pathways to regulate the FKS2 gene |
| Q36687648 | Strategies to regulate transcription factor-mediated gene positioning and interchromosomal clustering at the nuclear periphery |
| Q30595591 | Studying the evolution of transcription factor binding events using multi-species ChIP-Seq data |
| Q42317152 | The Saccharomyces cerevisiae Cdk8 Mediator Represses AQY1 Transcription by Inhibiting Set1p-Dependent Histone Methylation. |
| Q37912369 | The evolution of gene expression regulatory networks in yeasts |
| Q28533667 | The molecular mechanism of a cis-regulatory adaptation in yeast |
| Q46823444 | Thiamine increases the resistance of baker's yeast Saccharomyces cerevisiae against oxidative, osmotic and thermal stress, through mechanisms partly independent of thiamine diphosphate-bound enzymes. |
| Q55323106 | Towards a map of cis-regulatory sequences in the human genome. |
| Q38904184 | Transcription factors dynamically control the spatial organization of the yeast genome |
| Q35644801 | Transcriptional regulation and the diversification of metabolism in wine yeast strains. |
| Q35542072 | Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators. |
| Q41329937 | Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity |
| Q34211598 | Widespread Site-Dependent Buffering of Human Regulatory Polymorphism |
| Q33741818 | jMOSAiCS: joint analysis of multiple ChIP-seq datasets |
| Q38057905 | miRNA regulatory variation in human evolution |
Search more.