| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1044859878 |
| P356 | DOI | 10.1038/NRG3095 |
| P3181 | OpenCitations bibliographic resource ID | 475985 |
| P698 | PubMed publication ID | 22143240 |
| P5875 | ResearchGate publication ID | 51854348 |
| P50 | author | Gizem Kalay | Q82814587 |
| P2093 | author name string | Patricia J Wittkopp | |
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| The evolution of combinatorial gene regulation in fungi | Q33321398 | ||
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| The signature of positive selection at randomly chosen loci. | Q34614687 | ||
| Construction of transgenic Drosophila by using the site-specific integrase from phage phiC31 | Q34644225 | ||
| Divergence of transcription factor binding sites across related yeast species | Q34661726 | ||
| Evolutionary origin of a novel gene expression pattern through co-option of the latent activities of existing regulatory sequences | Q35064208 | ||
| Rapid evolutionary rewiring of a structurally constrained eye enhancer | Q35127076 | ||
| Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. | Q35207592 | ||
| Cis-regulatory elements in the Accord retrotransposon result in tissue-specific expression of the Drosophila melanogaster insecticide resistance gene Cyp6g1 | Q35730151 | ||
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| Transposable elements as sources of variation in animals and plants | Q36010477 | ||
| Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. | Q36276913 | ||
| New technologies, new findings, and new concepts in the study of vertebrate cis-regulatory sequences | Q36361716 | ||
| Evolution of cis-regulatory sequence and function in Diptera | Q36540447 | ||
| Variation in homeodomain DNA binding revealed by high-resolution analysis of sequence preferences | Q36865636 | ||
| The regulation and evolution of a genetic switch controlling sexually dimorphic traits in Drosophila | Q37002213 | ||
| Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? | Q37005588 | ||
| The loci of evolution: how predictable is genetic evolution? | Q37035424 | ||
| Functional and mechanistic diversity of distal transcription enhancers | Q37091409 | ||
| The genetic basis of adaptive pigmentation variation in Drosophila melanogaster | Q37115323 | ||
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| Resurrecting the role of transcription factor change in developmental evolution. | Q37194983 | ||
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| TATA box polymorphisms in human gene promoters and associated hereditary pathologies. | Q37408294 | ||
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| Determining the specificity of protein-DNA interactions | Q37793836 | ||
| Sequencing breakthroughs for genomic ecology and evolutionary biology | Q37876496 | ||
| Shadow enhancers as a source of evolutionary novelty | Q38287743 | ||
| A systems approach to measuring the binding energy landscapes of transcription factors | Q38305871 | ||
| Loss-of-function mutation in a repressor module of human-specifically activated enhancer HACNS1. | Q38331649 | ||
| Genetic analysis of variation in transcription factor binding in yeast | Q38345613 | ||
| DNA-bound transcription factor complexes analysed by mass-spectrometry: binding of novel proteins to the human c-fos SRE and related sequences | Q38659509 | ||
| Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population | Q38873256 | ||
| Coupling of enhancer and insulator properties identified in two retrotransposons modulates their mutagenic impact on nearby genes | Q39681351 | ||
| Multiple Functional Variants in cis Modulate PDYN Expression | Q39775530 | ||
| YEASTRACT: providing a programmatic access to curated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface | Q41582682 | ||
| Tissue-specific transcriptional regulation has diverged significantly between human and mouse | Q41833705 | ||
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| A single p450 allele associated with insecticide resistance in Drosophila. | Q44156259 | ||
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| P433 | issue | 1 | |
| P921 | main subject | cis-regulatory element | Q1093165 |
| P304 | page(s) | 59-69 | |
| P577 | publication date | 2011-12-06 | |
| P1433 | published in | Nature Reviews Genetics | Q1071824 |
| P1476 | title | Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence | |
| P478 | volume | 13 |
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| Q39110191 | No Excess of Cis-Regulatory Variation Associated with Intraspecific Selection in Wild Pearl Millet (Cenchrus americanus). |
| Q53422584 | Of Men and Mice: Modeling the Fragile X Syndrome. |
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| Q44472745 | Organ evolution in angiosperms driven by correlated divergences of gene sequences and expression patterns. |
| Q38994229 | Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split |
| Q38622945 | Overexpressed somatic alleles are enriched in functional elements in Breast Cancer |
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| Q28831431 | Parallelism and Epistasis in Skeletal Evolution Identified through Use of Phylogenomic Mapping Strategies |
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| Q90353797 | Phylogenetic modeling of regulatory element turnover based on epigenomic data |
| Q111629738 | Plant adaptation to climate change—Where are we? |
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| Q41613292 | Pleiotropy constrains the evolution of protein but not regulatory sequences in a transcription regulatory network influencing complex social behaviors. |
| Q47669345 | Pod shattering resistance associated with domestication is mediated by a NAC gene in soybean |
| Q37348052 | Potential Direct Regulators of the Drosophila yellow Gene Identified by Yeast One-Hybrid and RNAi Screens |
| Q41289555 | Potential impact of gene regulatory mechanisms on the evolution of multicellularity in the volvocine algae |
| Q55214949 | Prediction and identification of transcriptional regulatory elements at the lung cancer-specific DKK1 locus. |
| Q39341205 | Prediction and validation of cis-regulatory elements in 5' upstream regulatory regions of lectin receptor-like kinase gene family in rice |
| Q47210541 | Principles and methods of in-silico prioritization of non-coding regulatory variants |
| Q42334610 | Progressive Loss of Function in a Limb Enhancer during Snake Evolution |
| Q54956886 | Q&A: How do gene regulatory networks control environmental responses in plants? |
| Q34423553 | Quantitative genome-wide enhancer activity maps for five Drosophila species show functional enhancer conservation and turnover during cis-regulatory evolution |
| Q28649544 | Quantitative system drift compensates for altered maternal inputs to the gap gene network of the scuttle fly Megaselia abdita |
| Q31112747 | Reannotation of Yersinia pestis Strain 91001 Based on Omics Data |
| Q90244482 | Recent insights into the genotype-phenotype relationship from massively parallel genetic assays |
| Q92176963 | Redundant and Cryptic Enhancer Activities of the Drosophila yellow Gene |
| Q33739209 | Regulation of mRNA expression in breast cancer - a cis-tematic trans-action |
| Q89880986 | Regulators of an ancient polyphenism evolved through episodic protein divergence and parallel gene radiations |
| Q88617826 | Regulatory Divergence in Wound-Responsive Gene Expression between Domesticated and Wild Tomato |
| Q58789926 | Regulatory Divergence in the Stress Response of Tomato |
| Q90741356 | Regulatory changes in TaSNAC8-6A are associated with drought tolerance in wheat seedlings |
| Q111629650 | Regulatory pathways of CYC ‐like genes in patterning floral zygomorphy exemplified in Chirita pumila |
| Q34420649 | Repair of naturally occurring mismatches can induce mutations in flanking DNA. |
| Q38100946 | Research progress in allele-specific expression and its regulatory mechanisms |
| Q35096190 | Retroviruses facilitate the rapid evolution of the mammalian placenta. |
| Q34509633 | Role of non-coding sequence variants in cancer |
| Q38367031 | Role of transcriptional regulation in the evolution of plant phenotype: A dynamic systems approach |
| Q42374953 | SHH signaling directed by two oral epithelium-specific enhancers controls tooth and oral development. |
| Q96640898 | SIX1 cooperates with RUNX1 and SMAD4 in cell fate commitment of Müllerian duct epithelium |
| Q27325642 | Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences |
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| Q99236135 | Speciation and the developmental alarm clock |
| Q40258257 | Species differential regulation of COX2 can be described by an NFκB-dependent logic AND gate |
| Q99712241 | Spotlight on the Granules (Grainyhead-Like Proteins) - From an Evolutionary Conserved Controller of Epithelial Trait to Pioneering the Chromatin Landscape |
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| Q54979583 | Structural, Functional, and Evolutionary Characterization of Major Drought Transcription Factors Families in Maize. |
| Q36744733 | Structurally differentiated cis-elements that interact with PU.1 are functionally distinguishable in acute promyelocytic leukemia |
| Q38883822 | Structure of the Transcriptional Regulatory Network Correlates with Regulatory Divergence in Drosophila |
| Q40311561 | Survivin a radiogenetic promoter for glioblastoma viral gene therapy independently from CArG motifs |
| Q39198293 | Systematic Discovery of Chromatin-Bound Protein Complexes from ChIP-seq Datasets |
| Q54310538 | Systematic analysis of noncoding somatic mutations and gene expression alterations across 14 tumor types. |
| Q55439616 | Systematic pan-cancer analysis of somatic allele frequency. |
| Q64074428 | Systems Biology of Cold Adaptation in the Polyextremophilic Red Alga |
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| Q90640189 | Testing Proximity of Genomic Regions to Transcription Start Sites and Enhancers Complements Gene Set Enrichment Testing |
| Q58571319 | The Ciona Myogenic Regulatory Factor Functions as a Typical MRF but Possesses a Novel N-terminus that is Essential for Activity |
| Q35151849 | The CpG island encompassing the promoter and first exon of human DNMT3L gene is a PcG/TrX response element (PRE). |
| Q92202735 | The Role of Chromatin Accessibility in cis-Regulatory Evolution |
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| Q33839420 | The chromatin landscape of Drosophila: comparisons between species, sexes, and chromosomes |
| Q37202233 | The evolution of lineage-specific regulatory activities in the human embryonic limb |
| Q28727265 | The evolution of root hairs and rhizoids |
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| Q28542978 | The genetic and mechanistic basis for variation in gene regulation |
| Q91168851 | The genetic architecture of adaptation: convergence and pleiotropy in Heliconius wing pattern evolution |
| Q37628813 | The nature and extent of mutational pleiotropy in gene expression of male Drosophila serrata. |
| Q34973346 | The nitrate transporter (NRT) gene family in poplar |
| Q56139379 | The placenta as a model for understanding the origin and evolution of vertebrate organs |
| Q35400045 | The role of cis regulatory evolution in maize domestication. |
| Q90024199 | Tissue-Specific cis-Regulatory Divergence Implicates eloF in Inhibiting Interspecies Mating in Drosophila |
| Q55323106 | Towards a map of cis-regulatory sequences in the human genome. |
| Q91982895 | Towards the new normal: Transcriptomic convergence and genomic legacy of the two subgenomes of an allopolyploid weed (Capsella bursa-pastoris) |
| Q90230262 | Transcription Factors AhR/ARNT Regulate the Expression of CYP6CY3 and CYP6CY4 Switch Conferring Nicotine Adaptation |
| Q35894089 | Transcription Factors Exhibit Differential Conservation in Bacteria with Reduced Genomes |
| Q42345745 | Transcriptional Interference Promotes Rapid Expression Divergence of Drosophila Nested Genes |
| Q52630978 | Transcriptional and epigenetic adaptation of maize chromosomes in Oat-Maize addition lines. |
| Q34631682 | Transcriptional and epigenetic regulation of T-helper lineage specification |
| Q38695449 | Transcriptional regulation of early T-cell development in the thymus |
| Q85714318 | Transcriptional regulation of tocopherol biosynthesis in tomato |
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| Q48314118 | Two genetic changes in cis-regulatory elements caused evolution of petal spot position in Clarkia. |
| Q91802270 | Understanding the Role of the WRKY Gene Family under Stress Conditions in Pigeonpea (Cajanus Cajan L.). |
| Q91496533 | Unraveling cis and trans regulatory evolution during cotton domestication |
| Q37009014 | Variation in the Oxytocin Receptor Gene Predicts Brain Region-Specific Expression and Social Attachment |
| Q39043824 | Waiting in the wings: what can we learn about gene co-option from the diversification of butterfly wing patterns? |
| Q27301792 | Weak Polygenic Selection Drives the Rapid Adaptation of the Chemosensory System: Lessons from the Upstream Regions of the Major Gene Families |
| Q64058206 | Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle |
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| Q38236999 | Whole-genome duplication in teleost fishes and its evolutionary consequences |
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