| scholarly article | Q13442814 |
| P50 | author | Ulrich Technau | Q37622951 |
| David Fredman | Q40835178 | ||
| André F Rendeiro | Q55445027 | ||
| P2093 | author name string | Alexandra Schauer | |
| Anna F Gilles | |||
| Anna Schönauer | |||
| Carina Pribitzer | |||
| Eduard Renfer | |||
| Johannes B Schinko | |||
| Michaela Schwaiger | |||
| P2860 | cites work | Highly conserved non-coding sequences are associated with vertebrate development | Q21092819 |
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| A large fraction of extragenic RNA pol II transcription sites overlap enhancers | Q21145794 | ||
| Ultraconserved Elements in the Human Genome | Q22065813 | ||
| Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization | Q22065873 | ||
| An integrated encyclopedia of DNA elements in the human genome | Q22122150 | ||
| Genomic views of distant-acting enhancers | Q22122210 | ||
| CTCF: master weaver of the genome | Q24621388 | ||
| Genome-scale DNA methylation maps of pluripotent and differentiated cells | Q24621431 | ||
| Adaptive evolution of pelvic reduction in sticklebacks by recurrent deletion of a Pitx1 enhancer | Q24623538 | ||
| Histone H3K27ac separates active from poised enhancers and predicts developmental state | Q24628758 | ||
| Mediator and cohesin connect gene expression and chromatin architecture | Q24632695 | ||
| Cluster analysis and display of genome-wide expression patterns | Q24644463 | ||
| DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA | Q24645346 | ||
| Ultraconservation identifies a small subset of extremely constrained developmental enhancers | Q24648269 | ||
| Fast and accurate short read alignment with Burrows-Wheeler transform | Q24653853 | ||
| Single-nucleosome mapping of histone modifications in S. cerevisiae | Q24816848 | ||
| Gene Expression Omnibus: NCBI gene expression and hybridization array data repository | Q27860523 | ||
| High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
| Evo-Devo and an Expanding Evolutionary Synthesis: A Genetic Theory of Morphological Evolution | Q28111693 | ||
| Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome | Q28131828 | ||
| ChIP-seq accurately predicts tissue-specific activity of enhancers | Q28235102 | ||
| Histone modifications at human enhancers reflect global cell-type-specific gene expression | Q28238467 | ||
| An expansive human regulatory lexicon encoded in transcription factor footprints | Q28274429 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules | Q28589026 | ||
| Cnidarian microRNAs frequently regulate targets by cleavage | Q28660421 | ||
| The chromatin insulator CTCF and the emergence of metazoan diversity | Q28714218 | ||
| Evolutionary crossroads in developmental biology: Cnidaria | Q28741738 | ||
| Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence | Q29032100 | ||
| Functions of DNA methylation: islands, start sites, gene bodies and beyond | Q29547260 | ||
| BEDTools: a flexible suite of utilities for comparing genomic features | Q29547332 | ||
| A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression | Q29614326 | ||
| A unique chromatin signature uncovers early developmental enhancers in humans | Q29614327 | ||
| Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
| A map of the cis-regulatory sequences in the mouse genome | Q29615404 | ||
| The zebrafish reference genome sequence and its relationship to the human genome | Q29616593 | ||
| DNA methylation landscapes: provocative insights from epigenomics | Q29617144 | ||
| Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
| BamTools: a C++ API and toolkit for analyzing and managing BAM files | Q30426432 | ||
| A muscle-specific transgenic reporter line of the sea anemone, Nematostella vectensis. | Q30492787 | ||
| Identification of transcription factor binding sites from ChIP-seq data at high resolution | Q30663573 | ||
| Minimal ProtoHox cluster inferred from bilaterian and cnidarian Hox complements | Q33253491 | ||
| Genome-wide views of chromatin structure | Q33611702 | ||
| Comprehensive comparative analysis of strand-specific RNA sequencing methods | Q33658471 | ||
| A CTCF-independent role for cohesin in tissue-specific transcription | Q33812535 | ||
| Conservation and divergence of methylation patterning in plants and animals | Q33928315 | ||
| Origins of bilateral symmetry: Hox and dpp expression in a sea anemone | Q33978127 | ||
| Genome-wide quantitative enhancer activity maps identified by STARR-seq | Q34035127 | ||
| Genome-wide evolutionary analysis of eukaryotic DNA methylation. | Q34110385 | ||
| Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts | Q34128292 | ||
| Transcriptional enhancers in animal development and evolution | Q34137394 | ||
| Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution | Q34239260 | ||
| Modification of enhancer chromatin: what, how, and why? | Q34331930 | ||
| Unexpected complexity of the Wnt gene family in a sea anemone | Q34384439 | ||
| Maintenance of ancestral complexity and non-metazoan genes in two basal cnidarians | Q34459750 | ||
| A genomic view of 500 million years of cnidarian evolution | Q34679803 | ||
| Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation | Q34694111 | ||
| Morphological evolution caused by many subtle-effect substitutions in regulatory DNA. | Q35207592 | ||
| A cis-regulatory map of the Drosophila genome. | Q35229726 | ||
| A role for cohesin in T-cell-receptor rearrangement and thymocyte differentiation | Q35230516 | ||
| Large-scale discovery of enhancers from human heart tissue | Q35635739 | ||
| Histone H3K4 demethylation is negatively regulated by histone H3 acetylation in Saccharomyces cerevisiae | Q36389626 | ||
| ChromHMM: automating chromatin-state discovery and characterization | Q36625108 | ||
| Epigenetic conservation at gene regulatory elements revealed by non-methylated DNA profiling in seven vertebrates | Q36640718 | ||
| Patterning and regulatory associations of DNA methylation are mirrored by histone modifications in insects | Q36754746 | ||
| A high-resolution enhancer atlas of the developing telencephalon | Q36862710 | ||
| The landscape of RNA polymerase II transcription initiation in C. elegans reveals promoter and enhancer architectures | Q37061192 | ||
| CpG islands influence chromatin structure via the CpG-binding protein Cfp1. | Q37061200 | ||
| cis-Regulatory networks during development: a view of Drosophila. | Q37302006 | ||
| Evolution of eukaryotic DNA methylation and the pursuit of safer sex. | Q37787560 | ||
| Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
| Deciphering the transcriptional cis-regulatory code | Q38055914 | ||
| CTCF and cohesin: linking gene regulatory elements with their targets | Q38090111 | ||
| Shadow enhancers as a source of evolutionary novelty | Q38287743 | ||
| Analysis of forkhead and snail expression reveals epithelial-mesenchymal transitions during embryonic and larval development of Nematostella vectensis. | Q38335087 | ||
| Stepwise modification of a modular enhancer underlies adaptation in a Drosophila population | Q38873256 | ||
| Comparative methylomics reveals gene-body H3K36me3 in Drosophila predicts DNA methylation and CpG landscapes in other invertebrates. | Q38894474 | ||
| Comparative epigenomic annotation of regulatory DNA. | Q41849973 | ||
| Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis. | Q41888953 | ||
| Induction of gametogenesis in the basal cnidarian Nematostella vectensis(Anthozoa). | Q42519258 | ||
| Cell-type-specific TEV protease cleavage reveals cohesin functions in Drosophila neurons | Q43063587 | ||
| piggyBac-based mosaic screen identifies a postmitotic function for cohesin in regulating developmental axon pruning | Q43076987 | ||
| The evolution of invertebrate gene body methylation | Q44409484 | ||
| Regulatory evolution of shavenbaby/ovo underlies multiple cases of morphological parallelism | Q47673873 | ||
| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. | Q51827112 | ||
| In situ hybridization of starlet sea anemone (Nematostella vectensis) embryos, larvae, and polyps. | Q51915396 | ||
| Investigating the origins of triploblasty: 'mesodermal' gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum, Cnidaria; class, Anthozoa). | Q52089654 | ||
| The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. | Q52689226 | ||
| P433 | issue | 4 | |
| P304 | page(s) | 639-650 | |
| P577 | publication date | 2014-03-18 | |
| P1433 | published in | Genome Research | Q5533485 |
| P1476 | title | Evolutionary conservation of the eumetazoan gene regulatory landscape | |
| P478 | volume | 24 |
| Q42510855 | A novel technique to combine and analyse spatial and temporal expression datasets: A case study with the sea anemone Nematostella vectensis to identify potential gene interactions. |
| Q91323516 | Boundary maintenance in the ancestral metazoan Hydra depends on histone acetylation |
| Q59128704 | Cell type-specific expression profiling unravels the development and evolution of stinging cells in sea anemone |
| Q51417627 | ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation. |
| Q36403981 | Characterization of Morphological and Cellular Events Underlying Oral Regeneration in the Sea Anemone, Nematostella vectensis |
| Q28660421 | Cnidarian microRNAs frequently regulate targets by cleavage |
| Q102075531 | Conservative route to genome compaction in a miniature annelid |
| Q90318112 | Convergent evolution of a vertebrate-like methylome in a marine sponge |
| Q36673962 | Current directions and future perspectives from the third Nematostella research conference |
| Q35036393 | Enhancer evolution across 20 mammalian species |
| Q92039868 | Enhancers Facilitate the Birth of De Novo Genes and Gene Integration into Regulatory Networks |
| Q38944749 | Evolution of Brain Active Gene Promoters in Human Lineage Towards the Increased Plasticity of Gene Regulation |
| Q89505435 | Evolutionary dynamics of microRNA target sites across vertebrate evolution |
| Q41525611 | Gene Expression Patterns in Brachiopod Larvae Refute the "Brachiopod-Fold" Hypothesis |
| Q28650563 | How do environmental factors influence life cycles and development? An experimental framework for early-diverging metazoans |
| Q58606523 | I-SceI Meganuclease-mediated transgenesis in the acorn worm, Saccoglossus kowalevskii |
| Q89783466 | Initial Virome Characterization of the Common Cnidarian Lab Model Nematostella vectensis |
| Q33675663 | Landscape of histone modifications in a sponge reveals the origin of animal cis-regulatory complexity. |
| Q89176327 | Loci-specific histone acetylation profiles associated with transcriptional coactivator p300 during early myoblast differentiation |
| Q52332500 | Long non-coding regulatory RNAs in sponges and insights into the origin of animal multicellularity. |
| Q47784656 | Meganuclease-assisted generation of stable transgenics in the sea anemone Nematostella vectensis |
| Q41510757 | Molecular structures guide the engineering of chromatin |
| Q42333295 | Non-model model organisms. |
| Q39018235 | Origin and evolution of the metazoan non-coding regulatory genome |
| Q36253764 | Rfx2 Stabilizes Foxj1 Binding at Chromatin Loops to Enable Multiciliated Cell Gene Expression. |
| Q37589376 | Sex-specific chromatin landscapes in an ultra-compact chordate genome. |
| Q45981250 | TALEN and CRISPR/Cas9-mediated genome editing in the early-branching metazoan Nematostella vectensis. |
| Q34523527 | The Dynamic Regulatory Genome of Capsaspora and the Origin of Animal Multicellularity |
| Q39018629 | The cellular and molecular basis of cnidarian neurogenesis. |
| Q90887841 | The draft genome of Actinia tenebrosa reveals insights into toxin evolution |
| Q42272098 | The evolution of gene regulation. |
| Q97544672 | The genetic factors of bilaterian evolution |
| Q38358147 | The heritable effects of nanotoxicity |
| Q39289407 | The origin of Metazoa: a unicellular perspective. |
| Q50459532 | The origins of developmental gene regulation. |
| Q90170712 | The past, present, and future of coral heat stress studies |
| Q28067632 | The rise of the starlet sea anemone Nematostella vectensis as a model system to investigate development and regeneration |
| Q92513282 | The role of chromatin dynamics under global warming response in the symbiotic coral model Aiptasia |
| Q39157796 | Topologically associated domains: a successful scaffold for the evolution of gene regulation in animals. |
| Q38570600 | Toward understanding the evolution of vertebrate gene regulatory networks: comparative genomics and epigenomic approaches |
| Q100511665 | Understanding 'Non-genetic' Inheritance: Insights from Molecular-Evolutionary Crosstalk |
| Q57900707 | Using Nematostella vectensis to Study the Interactions between Genome, Epigenome, and Bacteria in a Changing Environment |
| Q90549808 | What lies beneath: Hydra provides cnidarian perspectives into the evolution of FGFR docking proteins |
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