| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2008Sci...321.1314H |
| P356 | DOI | 10.1126/SCIENCE.1160631 |
| P932 | PMC publication ID | 4257485 |
| P698 | PubMed publication ID | 18772429 |
| P5875 | ResearchGate publication ID | 23238527 |
| P2093 | author name string | Michael S Levine | |
| David A Hendrix | |||
| Joung-Woo Hong | |||
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| Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo | Q38360208 | ||
| Redundant and unique roles of two enhancer elements in the TCRgamma locus in gene regulation and gammadelta T cell development | Q44966928 | ||
| A functional screen for sonic hedgehog regulatory elements across a 1 Mb interval identifies long-range ventral forebrain enhancers. | Q52028948 | ||
| The evolution of gene regulation underlies a morphological difference between two Drosophila sister species. | Q52689226 | ||
| P433 | issue | 5894 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | evolutionary novelty | Q21074940 |
| P304 | page(s) | 1314 | |
| P577 | publication date | 2008-09-01 | |
| P1433 | published in | Science | Q192864 |
| P1476 | title | Shadow enhancers as a source of evolutionary novelty | |
| P478 | volume | 321 |
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| Q91917263 | Coacting enhancers can have complementary functions within gene regulatory networks and promote canalization |
| Q83224291 | Combinatorial chromatin dynamics foster accurate cardiopharyngeal fate choices |
| Q42718687 | Comparative epigenomics in distantly related teleost species identifies conserved cis-regulatory nodes active during the vertebrate phylotypic period |
| Q37632796 | Comparative genomics of gene regulation-conservation and divergence of cis-regulatory information. |
| Q38254349 | Complex interactions between cis-regulatory modules in native conformation are critical for Drosophila snail expression |
| Q33797835 | Composite effects of polymorphisms near multiple regulatory elements create a major-effect QTL |
| Q45962182 | Composition and dosage of a multipartite enhancer cluster control developmental expression of Ihh (Indian hedgehog). |
| Q37321103 | Conservation of enhancer location in divergent insects |
| Q38088587 | Conserved non-coding elements and cis regulation: actions speak louder than words |
| Q57987447 | Constrained vertebrate evolution by pleiotropic genes |
| Q37614539 | Control of Distal-less expression in the Drosophila appendages by functional 3' enhancers. |
| Q29614793 | Control of the embryonic stem cell state |
| Q34468271 | Convergence of developmental and oncogenic signaling pathways at transcriptional super-enhancers |
| Q28740341 | Convergent evolution of two mammalian neuronal enhancers by sequential exaptation of unrelated retroposons |
| Q57679051 | Cooperation, cis-interactions, versatility and evolutionary plasticity of multiple cis-acting elements underlie krox20 hindbrain regulation |
| Q40576904 | Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene |
| Q98175494 | Cross-species analysis of enhancer logic using deep learning |
| Q38161887 | Deep conservation of cis-regulatory elements in metazoans |
| Q24298159 | Deletion of a remote enhancer near ATOH7 disrupts retinal neurogenesis, causing NCRNA disease |
| Q42559313 | Design flexibility in cis-regulatory control of gene expression: synthetic and comparative evidence |
| Q41853860 | Developmental regulation of chromatin conformation by Hox proteins in Drosophila |
| Q60044031 | Dichotomy in redundant enhancers points to presence of initiators of gene regulation |
| Q90596855 | Diet-Induced Circadian Enhancer Remodeling Synchronizes Opposing Hepatic Lipid Metabolic Processes |
| Q50545017 | Direct Interactions Between Gli3, Wnt8b, and Fgfs Underlie Patterning of the Dorsal Telencephalon. |
| Q26865492 | Disentangling the many layers of eukaryotic transcriptional regulation |
| Q52651331 | Disrupting the three-dimensional regulatory topology of the Pitx1 locus results in overtly normal development. |
| Q38185270 | Disruption of long-range gene regulation in human genetic disease: a kaleidoscope of general principles, diverse mechanisms and unique phenotypic consequences |
| Q92147748 | Distinct Roles of Broadly Expressed Repressors Support Dynamic Enhancer Action and Change in Time |
| Q33926832 | Distinct functional constraints partition sequence conservation in a cis-regulatory element |
| Q35008847 | Distinct regulatory mechanisms act to establish and maintain Pax3 expression in the developing neural tube |
| Q34988041 | Divergent transcriptional regulatory logic at the intersection of tissue growth and developmental patterning. |
| Q52309896 | Diversification of transcription factor-DNA interactions and the evolution of gene regulatory networks. |
| Q112281221 | Endogenous retroviruses co-opted as divergently transcribed regulatory elements shape the regulatory landscape of embryonic stem cells |
| Q89595372 | Enhancer Domains Predict Gene Pathogenicity and Inform Gene Discovery in Complex Disease |
| Q90850827 | Enhancer Dysfunction in 3D Genome and Disease |
| Q88669034 | Enhancer Logic and Mechanics in Development and Disease |
| Q42366787 | Enhancer Variants Synergistically Drive Dysfunction of a Gene Regulatory Network In Hirschsprung Disease |
| Q35942104 | Enhancer additivity and non-additivity are determined by enhancer strength in the Drosophila embryo |
| Q92493381 | Enhancer and super-enhancer: Positive regulators in gene transcription |
| Q38193691 | Enhancer biology and enhanceropathies |
| Q38964475 | Enhancer divergence and cis-regulatory evolution in the human and chimp neural crest |
| Q58998812 | Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum |
| Q51733904 | Enhancer identification and activity evaluation in the red flour beetle, Tribolium castaneum. |
| Q92321989 | Enhancer jungles establish robust tissue-specific regulatory control in the human genome |
| Q50114986 | Enhancer redundancy provides phenotypic robustness in mammalian development. |
| Q61031843 | Enhancer talk |
| Q42199833 | Enhancer trap infidelity in Drosophila optomotor-blind |
| Q37314317 | Enhancer-promoter communication at the Drosophila engrailed locus. |
| Q37692126 | Enhancers |
| Q42324921 | Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes. |
| Q35097959 | Enhancers compete with a long non-coding RNA for regulation of the Kcnq1 domain |
| Q96019205 | Enhancers, development, and evolution |
| Q40064881 | Epigenomic annotation of gene regulatory alterations during evolution of the primate brain. |
| Q28656320 | Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency |
| Q38730271 | Epo reprograms the epigenome of erythroid cells |
| Q39013266 | Ever-Changing Landscapes: Transcriptional Enhancers in Development and Evolution |
| Q34443568 | Evidence for deep regulatory similarities in early developmental programs across highly diverged insects |
| Q50672624 | Evolution of Alu elements toward enhancers. |
| Q37630508 | Evolution of Shh endoderm enhancers during morphological transition from ventral lungs to dorsal gas bladder. |
| Q61207268 | Evolution of a tissue-specific silencer underlies divergence in the expression of pax2 and pax8 paralogues |
| Q34790876 | Evolution of insect dorsoventral patterning mechanisms |
| Q42909090 | Evolution of transcriptional enhancers and animal diversity. |
| Q37683468 | Evolutionary conservation of the eumetazoan gene regulatory landscape |
| Q56890487 | Evolutionary emergence of the // regulatory cluster refined mechanisms for hindbrain boundaries formation |
| Q39327128 | Extensive conservation of ancient microsynteny across metazoans due to cis-regulatory constraints |
| Q38670860 | Favorable genomic environments for cis-regulatory evolution: A novel theoretical framework. |
| Q38334865 | From shavenbaby to the naked valley: trichome formation as a model for evolutionary developmental biology |
| Q90798524 | Functional Consequences of Chromosomal Rearrangements on Gene Expression: Not So Deleterious After All? |
| Q28654627 | Functional analysis of limb transcriptional enhancers in the mouse |
| Q41994561 | Functional and topological characteristics of mammalian regulatory domains. |
| Q37619278 | Functional characterization of SIM1-associated enhancers |
| Q41813578 | Functional characterization of tissue-specific enhancers in the DLX5/6 locus |
| Q24623917 | Functional cis-regulatory genomics for systems biology |
| Q61660344 | Functional dissection of the ARGONAUTE7 promoter |
| Q38369954 | Functions of noncoding sequences in mammalian genomes. |
| Q94571912 | Gene Regulation in and out of Equilibrium |
| Q62937912 | Gene Regulatory Elements |
| Q85016248 | Gene regulation: enhancers stepping out of the shadow |
| Q34867793 | Gene regulatory networks and the role of robustness and stochasticity in the control of gene expression |
| Q37522869 | Gene-regulatory networks in the Ciona embryos. |
| Q37327013 | Genetic dissection of the α-globin super-enhancer in vivo |
| Q38287746 | Genetics. Enhancing gene regulation |
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| Q33694443 | Global view of enhancer-promoter interactome in human cells. |
| Q63979649 | Heart enhancers with deeply conserved regulatory activity are established early in development |
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| Q37068438 | How the Dorsal gradient works: insights from postgenome technologies |
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| Q41066253 | In silico evolution of the hunchback gene indicates redundancy in cis-regulatory organization and spatial gene expression |
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| Q36281809 | Interpreting the regulatory genome: the genomics of transcription factor function in Drosophila melanogaster |
| Q97685270 | Intrinsic control of muscle attachment sites matching |
| Q41324284 | Krox20 hindbrain regulation incorporates multiple modes of cooperation between cis-acting elements |
| Q36090399 | Krüppel Expression Levels Are Maintained through Compensatory Evolution of Shadow Enhancers |
| Q38007713 | Landscapes and archipelagos: spatial organization of gene regulation in vertebrates |
| Q36618547 | Lineage-affiliated transcription factors bind the Gata3 Tce1 enhancer to mediate lineage-specific programs |
| Q37997215 | Localized and temporal gene regulation in heart development |
| Q92000591 | Long-range enhancer-promoter contacts in gene expression control |
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| Q30435483 | Microsatellite repeat instability fuels evolution of embryonic enhancers in Hawaiian Drosophila |
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| Q30786469 | Mitosis-associated repression in development |
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| Q42776270 | Multiplexed Engineering and Analysis of Combinatorial Enhancer Activity in Single Cells |
| Q36761380 | Neural Progenitors Adopt Specific Identities by Directly Repressing All Alternative Progenitor Transcriptional Programs |
| Q34661057 | Neural precursor-specific expression of multiple Drosophila genes is driven by dual enhancer modules with overlapping function |
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| Q38275663 | Promoter or enhancer, what's the difference? Deconstruction of established distinctions and presentation of a unifying model. |
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| Q37623767 | Quantitative modeling of gene expression using DNA shape features of binding sites. |
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| Q92176963 | Redundant and Cryptic Enhancer Activities of the Drosophila yellow Gene |
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| Q52654765 | Reporter Analyses Reveal Redundant Enhancers that Confer Robustness on Cis-Regulatory Mechanisms. |
| Q95828661 | Repressive interactions in gene regulatory networks: When you have no other choice |
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| Q59102218 | Secondary enhancers synergise with primary enhancers to guarantee fine-tuned muscle gene expression |
| Q37697916 | Sequence signatures extracted from proximal promoters can be used to predict distal enhancers |
| Q39815624 | Sequential construction of a model for modular gene expression control, applied to spatial patterning of the Drosophila gene hunchback |
| Q37011338 | Sexual back talk with evolutionary implications: stimulation of the Drosophila sex-determination gene sex-lethal by its target transformer |
| Q41829988 | Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks |
| Q41837637 | Shadow Enhancers Mediate Dynamic Shifts of Gap Gene Expression in the Drosophila Embryo |
| Q98506415 | Shadow enhancers can suppress input transcription factor noise through distinct regulatory logic |
| Q50720517 | Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development. |
| Q34134393 | Shadow enhancers foster robustness of Drosophila gastrulation |
| Q42397517 | Shadow enhancers: frequently asked questions about distributed cis-regulatory information and enhancer redundancy |
| Q88128769 | Shaping Up the Embryo: The Role of Genome 3D Organization |
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| Q64897742 | Signal Integration by Shadow Enhancers and Enhancer Duplications Varies across the Drosophila Embryo. |
| Q37341006 | Stepwise Progression of Embryonic Patterning |
| Q37442499 | Stripy Ftz target genes are coordinately regulated by Ftz-F1. |
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| Q38133544 | Study of Cis-regulatory Elements in the Ascidian Ciona intestinalis |
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| Q35082251 | Subtle changes in motif positioning cause tissue-specific effects on robustness of an enhancer's activity |
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| Q91933011 | Super-enhancers: critical roles and therapeutic targets in hematologic malignancies |
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| Q37183697 | Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers |
| Q35137494 | Targeting of somatic hypermutation by immunoglobulin enhancer and enhancer-like sequences. |
| Q41662098 | Temporal regulation of epithelium formation mediated by FoxA, MKLP1, MgcRacGAP, and PAR-6. |
| Q98575983 | The Atoh7 remote enhancer provides transcriptional robustness during retinal ganglion cell development |
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| Q39038279 | The Functionality and Evolution of Eukaryotic Transcriptional Enhancers |
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| Q37304866 | The mystery of extreme non-coding conservation. |
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| Q36596534 | The relationship between long-range chromatin occupancy and polymerization of the Drosophila ETS family transcriptional repressor Yan |
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| Q90170774 | Three-dimensional genome: developmental technologies and applications in precision medicine |
| Q92978642 | Towards a comprehensive catalogue of validated and target-linked human enhancers |
| Q37417009 | Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters. |
| Q50102218 | Transcription factor-dependent 'anti-repressive' mammalian enhancers exclude H3K27me3 from extended genomic domains. |
| Q38032407 | Transcription factors: from enhancer binding to developmental control |
| Q28067751 | Transcriptional Dynamics at Brain Enhancers: from Functional Specialization to Neurodegeneration |
| Q98906124 | Transcriptional Enhancers in Drosophila |
| Q37969686 | Transcriptional activators and activation mechanisms |
| Q37581291 | Transcriptional activity of the short gastrulation primary enhancer in the ventral midline requires its early activity in the presumptive neurogenic ectoderm |
| Q92831339 | Transcriptional autoregulation of zebrafish tbx6 is required for somite segmentation |
| Q36041128 | Transcriptional control of transglutaminase 2 expression in mouse apoptotic thymocytes. |
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| Q47624989 | Transcriptional precision and accuracy in development: from measurements to models and mechanisms |
| Q36066304 | Transcriptional repression via antilooping in the Drosophila embryo |
| Q37588128 | Tuning cell differentiation patterns and single cell dynamics by regulating proteins' functionalities in a toggle switch |
| Q91975741 | Two pair-rule responsive enhancers regulate wingless transcription in the Drosophila blastoderm embryo |
| Q41329937 | Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity |
| Q42672131 | Unique N-terminal sequences in two Runx1 isoforms are dispensable for Runx1 function |
| Q38529033 | Unraveling the Tangled Skein: The Evolution of Transcriptional Regulatory Networks in Development. |
| Q39946990 | Use of a Drosophila genome-wide conserved sequence database to identify functionally related cis-regulatory enhancers |
| Q36511775 | Use of alternative promoters may hide genetic effects on phenotypic traits |
| Q37815869 | When needles look like hay: how to find tissue-specific enhancers in model organism genomes |
| Q35106698 | Whole-embryo modeling of early segmentation in Drosophila identifies robust and fragile expression domains |
| Q37861644 | Zebrafish as a genomics model for human neurological and polygenic disorders |
| Q36199580 | Zelda overcomes the high intrinsic nucleosome barrier at enhancers during Drosophila zygotic genome activation. |
| Q33821232 | Zelda potentiates morphogen activity by increasing chromatin accessibility |
| Q92522548 | p63 cooperates with CTCF to modulate chromatin architecture in skin keratinocytes |
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