| review article | Q7318358 |
| scholarly article | Q13442814 |
| P356 | DOI | 10.1038/S41576-019-0135-1 |
| P698 | PubMed publication ID | 31160792 |
| P50 | author | Xiao Li | Q57663826 |
| Xiang-Dong Fu | Q87757965 | ||
| P2860 | cites work | PML nuclear bodies | Q22065791 |
| Nuclear speckles: a model for nuclear organelles | Q22121993 | ||
| Chromosome territories, nuclear architecture and gene regulation in mammalian cells | Q22122379 | ||
| Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination | Q24307617 | ||
| An architectural role for a nuclear noncoding RNA: NEAT1 RNA is essential for the structure of paraspeckles | Q24310786 | ||
| Purification of proteins associated with specific genomic Loci | Q24315634 | ||
| RNA buffers the phase separation behavior of prion-like RNA binding proteins. | Q52323097 | ||
| The Role of Phase Separation in Heterochromatin Formation, Function, and Regulation. | Q52592477 | ||
| Phase Separation of FUS Is Suppressed by Its Nuclear Import Receptor and Arginine Methylation. | Q52691574 | ||
| mRNA structure determines specificity of a polyQ-driven phase separation. | Q52719714 | ||
| Nucleation by rRNA Dictates the Precision of Nucleolus Assembly. | Q52841653 | ||
| Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II. | Q54977608 | ||
| RNA Polymerase II Is Required for RNAi-Dependent Heterochromatin Assembly | Q56092183 | ||
| Live-cell imaging reveals the dynamics of PRC2 and recruitment to chromatin by SUZ12-associated subunits | Q56525266 | ||
| Nuclear-Import Receptors Reverse Aberrant Phase Transitions of RNA-Binding Proteins with Prion-like Domains | Q56532460 | ||
| Noncoding RNA-nucleated heterochromatin spreading is intrinsically labile and requires accessory elements for epigenetic stability | Q56533919 | ||
| Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus | Q57485110 | ||
| Imaging dynamic and selective low-complexity domain interactions that control gene transcription | Q57979132 | ||
| Spatiotemporal regulation of liquid-like condensates in epigenetic inheritance. | Q59066160 | ||
| Epigenetic inheritance mediated by coupling of RNAi and histone H3K9 methylation | Q59088465 | ||
| The Human RNA-Binding Proteome and Its Dynamics during Translational Arrest | Q60197580 | ||
| Jarid2 Is Implicated in the Initial Xist-Induced Targeting of PRC2 to the Inactive X Chromosome | Q60483619 | ||
| Coactivator condensation at super-enhancers links phase separation and gene control | Q61960490 | ||
| Comprehensive identification of RNA–protein interactions in any organism using orthogonal organic phase separation (OOPS) | Q62516501 | ||
| RNA: Nuclear Glue for Folding the Genome | Q64462312 | ||
| Stress-Induced Low Complexity RNA Activates Physiological Amyloidogenesis. | Q64974511 | ||
| Transcriptome-wide discovery of coding and noncoding RNA-binding proteins | Q88322089 | ||
| Beyond the Transport Function of Import Receptors: What's All the FUS about? | Q88423078 | ||
| Mediator and RNA polymerase II clusters associate in transcription-dependent condensates | Q89180976 | ||
| GADD45A binds R-loops and recruits TET1 to CpG island promoters | Q90929143 | ||
| Dismissal of RNA Polymerase II Underlies a Large Ligand-Induced Enhancer Decommissioning Program | Q91004288 | ||
| RNA polymerase II clustering through carboxy-terminal domain phase separation | Q91048516 | ||
| Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains | Q93199750 | ||
| RNA exosome depletion reveals transcription upstream of active human promoters | Q24321777 | ||
| Insights into RNA biology from an atlas of mammalian mRNA-binding proteins | Q24337152 | ||
| The mRNA-bound proteome and its global occupancy profile on protein-coding transcripts | Q24337622 | ||
| SMN interacts with a novel family of hnRNP and spliceosomal proteins | Q24535803 | ||
| RNAi-mediated targeting of heterochromatin by the RITS complex | Q24623437 | ||
| The Cajal body and histone locus body | Q24630829 | ||
| The Trithorax group protein Ash2l and Saf-A are recruited to the inactive X chromosome at the onset of stable X inactivation | Q24632245 | ||
| Heterogeneous nuclear ribonucleoprotein K is a transcription factor | Q24649693 | ||
| A natural allele of Nxf1 suppresses retrovirus insertional mutations | Q24658176 | ||
| Processing of intronic microRNAs | Q24677011 | ||
| A double take on bivalent promoters | Q26823816 | ||
| Breaking bad: R-loops and genome integrity | Q26858910 | ||
| Enhancer RNAs and regulated transcriptional programs | Q26865277 | ||
| Nxf1 natural variant E610G is a semi-dominant suppressor of IAP-induced RNA processing defects | Q27311325 | ||
| Extra-coding RNAs regulate neuronal DNA methylation dynamics | Q27339453 | ||
| High precision solution structure of the C-terminal KH domain of heterogeneous nuclear ribonucleoprotein K, a c-myc transcription factor | Q27618693 | ||
| Role of the polycomb protein EED in the propagation of repressive histone marks | Q27657483 | ||
| Genome regulation by long noncoding RNAs. | Q27691812 | ||
| A bivalent chromatin structure marks key developmental genes in embryonic stem cells | Q27860977 | ||
| Coilin: The first 25 years | Q28084574 | ||
| Gemin5 delivers snRNA precursors to the SMN complex for snRNP biogenesis | Q28115894 | ||
| Role of histone H3 lysine 27 methylation in Polycomb-group silencing | Q28131795 | ||
| Comprehensive mapping of long-range interactions reveals folding principles of the human genome | Q28131819 | ||
| Direct coupling of transcription and mRNA processing through the thermogenic coactivator PGC-1 | Q28138472 | ||
| Controlling the elongation phase of transcription with P-TEFb | Q28255518 | ||
| The snoRNA HBII-52 regulates alternative splicing of the serotonin receptor 2C | Q28287199 | ||
| Discrete small RNA-generating loci as master regulators of transposon activity in Drosophila | Q28292093 | ||
| SR proteins collaborate with 7SK and promoter-associated nascent RNA to release paused polymerase | Q28512917 | ||
| Genome-wide identification of polycomb-associated RNAs by RIP-seq | Q28513635 | ||
| A genome-wide RNAi screen draws a genetic framework for transposon control and primary piRNA biogenesis in Drosophila | Q28673148 | ||
| The Polycomb complex PRC2 and its mark in life | Q29547358 | ||
| Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome | Q29547359 | ||
| Landscape of transcription in human cells | Q29547467 | ||
| hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1. | Q35224643 | ||
| Small-RNA loading licenses Argonaute for assembly into a transcriptional silencing complex | Q35268605 | ||
| The long noncoding RNAs NEAT1 and MALAT1 bind active chromatin sites | Q35597074 | ||
| SRSF2 Mutations Contribute to Myelodysplasia by Mutant-Specific Effects on Exon Recognition | Q35601110 | ||
| The genomic binding sites of a noncoding RNA. | Q35651163 | ||
| Nuclear matrix factor hnRNP U/SAF-A exerts a global control of alternative splicing by regulating U2 snRNP maturation. | Q35823278 | ||
| SRSF2 Is Essential for Hematopoiesis, and Its Myelodysplastic Syndrome-Related Mutations Dysregulate Alternative Pre-mRNA Splicing | Q35917455 | ||
| Shelterin Protects Chromosome Ends by Compacting Telomeric Chromatin | Q35922154 | ||
| Prion-like domains in RNA binding proteins are essential for building subnuclear paraspeckles | Q35965458 | ||
| The transcriptional and epigenomic foundations of ground state pluripotency. | Q36100410 | ||
| Malat1 is not an essential component of nuclear speckles in mice | Q36114058 | ||
| Proliferation-dependent and cell cycle regulated transcription of mouse pericentric heterochromatin | Q36119637 | ||
| Formation and Maturation of Phase-Separated Liquid Droplets by RNA-Binding Proteins | Q36172705 | ||
| The role of the RNAi machinery in heterochromatin formation | Q36189588 | ||
| SRSF1 regulates the assembly of pre-mRNA processing factors in nuclear speckles | Q36234515 | ||
| Systematic Mapping of RNA-Chromatin Interactions In Vivo. | Q36263400 | ||
| Actin-dependent intranuclear repositioning of an active gene locus in vivo. | Q36274498 | ||
| The intron in centromeric noncoding RNA facilitates RNAi-mediated formation of heterochromatin. | Q36288451 | ||
| R loops regulate promoter-proximal chromatin architecture and cellular differentiation | Q36368469 | ||
| RNA-mediated interaction of Cajal bodies and U2 snRNA genes. | Q36377543 | ||
| Panoramix enforces piRNA-dependent cotranscriptional silencing | Q36490043 | ||
| RNAi triggered by specialized machinery silences developmental genes and retrotransposons | Q36561712 | ||
| Widespread RNA binding by chromatin-associated proteins | Q36587843 | ||
| Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast | Q36715627 | ||
| A U1 snRNP-specific assembly pathway reveals the SMN complex as a versatile hub for RNP exchange | Q36806948 | ||
| The Sam68 nuclear body is composed of two RNase-sensitive substructures joined by the adaptor HNRNPL | Q37063762 | ||
| 7SK-BAF axis controls pervasive transcription at enhancers | Q37170897 | ||
| Jpx RNA activates Xist by evicting CTCF. | Q37183433 | ||
| Live-cell visualization of pre-mRNA splicing with single-molecule sensitivity | Q37248133 | ||
| Co-transcriptional R-loops are the main cause of estrogen-induced DNA damage | Q37270352 | ||
| Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome | Q37302890 | ||
| DNMT1-interacting RNAs block gene-specific DNA methylation | Q37408576 | ||
| Defining NELF-E RNA binding in HIV-1 and promoter-proximal pause regions | Q37487966 | ||
| SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes | Q42380945 | ||
| Enhancer transcripts mark active estrogen receptor binding sites | Q42597586 | ||
| Chromatin-associated RNA interference components contribute to transcriptional regulation in Drosophila | Q42721062 | ||
| Cajal body dynamics and association with chromatin are ATP-dependent | Q44030629 | ||
| Nucleation of nuclear bodies by RNA. | Q44121925 | ||
| Circular intronic long noncoding RNAs | Q44174237 | ||
| Biochemical characterization of Yin Yang 1-RNA complexes | Q44550955 | ||
| Control of alternative splicing through siRNA-mediated transcriptional gene silencing. | Q45960034 | ||
| Splicing Activation by Rbfox Requires Self-Aggregation through Its Tyrosine-Rich Domain | Q46113977 | ||
| Non-coding Transcription Instructs Chromatin Folding and Compartmentalization to Dictate Enhancer-Promoter Communication and T Cell Fate | Q46131864 | ||
| R-ChIP Using Inactive RNase H Reveals Dynamic Coupling of R-loops with Transcriptional Pausing at Gene Promoters. | Q46266835 | ||
| Regulatory Expansion in Mammals of Multivalent hnRNP Assemblies that Globally Control Alternative Splicing. | Q46335847 | ||
| GRID-seq reveals the global RNA-chromatin interactome. | Q46431518 | ||
| Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. | Q47071080 | ||
| Nuclear Fractionation Reveals Thousands of Chromatin-Tethered Noncoding RNAs Adjacent to Active Genes | Q47099658 | ||
| The nuclear matrix protein HNRNPU maintains 3D genome architecture globally in mouse hepatocytes | Q47259543 | ||
| Molecular analysis of PRC2 recruitment to DNA in chromatin and its inhibition by RNA. | Q47617136 | ||
| Mechanistic insights into precursor messenger RNA splicing by the spliceosome | Q47738832 | ||
| In Situ Capture of Chromatin Interactions by Biotinylated dCas9. | Q47906054 | ||
| Assembly of the Yin Yang 1 transcription factor into messenger ribonucleoprotein particles requires direct RNA binding activity. | Q48773844 | ||
| Capturing the interactome of newly transcribed RNA. | Q50066049 | ||
| Intrinsically Disordered Regions Can Contribute Promiscuous Interactions to RNP Granule Assembly. | Q50098070 | ||
| The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations. | Q50209871 | ||
| Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide. | Q50650644 | ||
| Prader-Willi syndrome. | Q51826464 | ||
| FUS Phase Separation Is Modulated by a Molecular Chaperone and Methylation of Arginine Cation-π Interactions. | Q52314202 | ||
| Nuclear Import Receptor Inhibits Phase Separation of FUS through Binding to Multiple Sites. | Q52314205 | ||
| RNA-RNA interactions enable specific targeting of noncoding RNAs to nascent Pre-mRNAs and chromatin sites | Q34253195 | ||
| R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters | Q34258378 | ||
| Systematic identification of culture conditions for induction and maintenance of naive human pluripotency | Q34288016 | ||
| Roles for the Yb body components Armitage and Yb in primary piRNA biogenesis in Drosophila | Q34288988 | ||
| Enhancer RNA facilitates NELF release from immediate early genes | Q34292008 | ||
| Heterochromatic silencing and HP1 localization in Drosophila are dependent on the RNAi machinery | Q34293738 | ||
| Biogenesis of nuclear bodies | Q34313742 | ||
| Activating RNAs associate with Mediator to enhance chromatin architecture and transcription | Q34328232 | ||
| Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation | Q34348069 | ||
| The RNA-binding protein repertoire of embryonic stem cells. | Q34361566 | ||
| RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond | Q34385616 | ||
| Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre | Q34400074 | ||
| Complementary sequence-mediated exon circularization | Q34439813 | ||
| Systematic discovery of Xist RNA binding proteins | Q34470333 | ||
| Coexisting Liquid Phases Underlie Nucleolar Subcompartments | Q34527840 | ||
| Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript | Q34604327 | ||
| Primary microRNA transcripts are processed co-transcriptionally. | Q34931030 | ||
| Replication-dependent histone gene expression is related to Cajal body (CB) association but does not require sustained CB contact | Q34986765 | ||
| Coupling mRNA processing with transcription in time and space. | Q35006630 | ||
| Non-coding RNA: a new frontier in regulatory biology | Q35218913 | ||
| RNA-mediated epigenetic regulation of gene expression | Q35223649 | ||
| A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression | Q29614326 | ||
| Widespread transcription at neuronal activity-regulated enhancers | Q29614330 | ||
| Heterochromatin revisited | Q29614716 | ||
| Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels | Q29614781 | ||
| The multifunctional nucleolus | Q29615151 | ||
| Extensive promoter-centered chromatin interactions provide a topological basis for transcription regulation | Q29615949 | ||
| The small nucleolar RNAs | Q29616486 | ||
| The dynamics of a pre-mRNA splicing factor in living cells | Q29617746 | ||
| Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions | Q29617830 | ||
| Molecular mechanisms of long noncoding RNAs | Q29618027 | ||
| RNA phase transitions in repeat expansion disorders | Q30224330 | ||
| Promiscuous RNA binding by Polycomb repressive complex 2. | Q30457030 | ||
| Toward a consensus on the binding specificity and promiscuity of PRC2 for RNA. | Q30459421 | ||
| Targeting of Polycomb Repressive Complex 2 to RNA by Short Repeats of Consecutive Guanines | Q30460737 | ||
| EZH2 oncogenic activity in castration-resistant prostate cancer cells is Polycomb-independent | Q30538848 | ||
| Transcription Impacts the Efficiency of mRNA Translation via Co-transcriptional N6-adenosine Methylation. | Q33555634 | ||
| Interactions between JARID2 and noncoding RNAs regulate PRC2 recruitment to chromatin. | Q33631109 | ||
| Senescence is an endogenous trigger for microRNA-directed transcriptional gene silencing in human cells | Q33652889 | ||
| Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation | Q33665345 | ||
| Chromosome territories | Q33693822 | ||
| Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. | Q33914791 | ||
| RBFox2 Binds Nascent RNA to Globally Regulate Polycomb Complex 2 Targeting in Mammalian Genomes | Q33915641 | ||
| Regulatory interactions between RNA and polycomb repressive complex 2. | Q33938354 | ||
| Interactions between DSIF (DRB sensitivity inducing factor), NELF (negative elongation factor), and the Drosophila RNA polymerase II transcription elongation complex | Q33953149 | ||
| Transcriptional regulatory functions of nuclear long noncoding RNAs | Q33970112 | ||
| Biogenesis and function of nuclear bodies | Q34027349 | ||
| The Xist lncRNA exploits three-dimensional genome architecture to spread across the X chromosome | Q34037436 | ||
| The Xist lncRNA interacts directly with SHARP to silence transcription through HDAC3. | Q34043853 | ||
| Enhancers as non-coding RNA transcription units: recent insights and future perspectives | Q34046402 | ||
| Lack of Transcription Triggers H3K27me3 Accumulation in the Gene Body | Q34047143 | ||
| The protein encoded by the Drosophila position-effect variegation suppressor gene Su(var)3-9 combines domains of antagonistic regulators of homeotic gene complexes | Q34059541 | ||
| Nuclear speckles | Q34142111 | ||
| Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA | Q34185076 | ||
| An in vivo RNAi assay identifies major genetic and cellular requirements for primary piRNA biogenesis in Drosophila | Q34211342 | ||
| Nascent RNA interaction keeps PRC2 activity poised and in check. | Q34235646 | ||
| Revealing long noncoding RNA architecture and functions using domain-specific chromatin isolation by RNA purification | Q34247942 | ||
| Transcription factories: gene expression in unions? | Q37511710 | ||
| Mtr4-like protein coordinates nuclear RNA processing for heterochromatin assembly and for telomere maintenance. | Q37682692 | ||
| Pre-mRNA splicing: where and when in the nucleus | Q37868141 | ||
| Gene silencing in X-chromosome inactivation: advances in understanding facultative heterochromatin formation | Q37902049 | ||
| The control of HIV transcription: keeping RNA polymerase II on track | Q37958430 | ||
| The spatial organization of the human genome | Q38123221 | ||
| Liquid-liquid phase separation in biology | Q38257388 | ||
| Shadow enhancers as a source of evolutionary novelty | Q38287743 | ||
| PIWI-Interacting RNA: Its Biogenesis and Functions. | Q38369396 | ||
| Regulation of alternative splicing through coupling with transcription and chromatin structure | Q38512691 | ||
| Targeting Polycomb systems to regulate gene expression: modifications to a complex story | Q38595464 | ||
| Major satellite repeat RNA stabilize heterochromatin retention of Suv39h enzymes by RNA-nucleosome association and RNA:DNA hybrid formation. | Q38651215 | ||
| SLERT Regulates DDX21 Rings Associated with Pol I Transcription. | Q38704689 | ||
| Phase separation drives heterochromatin domain formation | Q38715602 | ||
| RNA Binding to CBP Stimulates Histone Acetylation and Transcription | Q38721439 | ||
| New Insights into the Regulation of Heterochromatin | Q38785509 | ||
| RNA-DNA Triplex Formation by Long Noncoding RNAs. | Q38988886 | ||
| Nascent Connections: R-Loops and Chromatin Patterning | Q38993930 | ||
| The molecular basis of the organization of repetitive DNA-containing constitutive heterochromatin in mammals. | Q39025713 | ||
| Biomolecular condensates: organizers of cellular biochemistry | Q39146409 | ||
| Regulatory feedback from nascent RNA to chromatin and transcription | Q39167100 | ||
| SAF-A Regulates Interphase Chromosome Structure through Oligomerization with Chromatin-Associated RNAs | Q39190884 | ||
| A Phase Separation Model for Transcriptional Control. | Q39199057 | ||
| Epigenetics. Epigenetic inheritance uncoupled from sequence-specific recruitment | Q39233663 | ||
| Long noncoding RNAs with snoRNA ends | Q39283383 | ||
| The X chromosome in space | Q39289403 | ||
| Lamina-Associated Domains: Links with Chromosome Architecture, Heterochromatin, and Gene Repression | Q39318399 | ||
| Nuclear bodies: news insights into structure and function | Q39347698 | ||
| RNA-mediated regulation of heterochromatin | Q39373700 | ||
| PCGF3/5-PRC1 initiates Polycomb recruitment in X chromosome inactivation | Q40036156 | ||
| The matrix protein hnRNP U is required for chromosomal localization of Xist RNA. | Q40036180 | ||
| NEAT1 scaffolds RNA-binding proteins and the Microprocessor to globally enhance pri-miRNA processing | Q40068205 | ||
| Chromodomains are protein-RNA interaction modules | Q40851812 | ||
| EBV noncoding RNA binds nascent RNA to drive host PAX5 to viral DNA. | Q41464136 | ||
| Immunological and ultrastructural studies of the nuclear coiled body with autoimmune antibodies. | Q41675900 | ||
| Thinking about a nuclear matrix | Q41726586 | ||
| The interaction of PRC2 with RNA or chromatin is mutually antagonistic | Q42278258 | ||
| Polycomb complexes in X chromosome inactivation. | Q42281728 | ||
| Enhancers and super-enhancers have an equivalent regulatory role in embryonic stem cells through regulation of single or multiple genes. | Q42324921 | ||
| High-Resolution Mapping of RNA-Binding Regions in the Nuclear Proteome of Embryonic Stem Cells. | Q42332214 | ||
| P2507 | corrigendum / erratum | Author Correction: Chromatin-associated RNAs as facilitators of functional genomic interactions | Q91622953 |
| P433 | issue | 9 | |
| P921 | main subject | functional genomics | Q1068690 |
| P304 | page(s) | 503-519 | |
| P577 | publication date | 2019-09-01 | |
| P1433 | published in | Nature Reviews Genetics | Q1071824 |
| P1476 | title | Chromatin-associated RNAs as facilitators of functional genomic interactions | |
| P478 | volume | 20 |
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