| scholarly article | Q13442814 |
| P6179 | Dimensions Publication ID | 1024341436 |
| P356 | DOI | 10.1186/S13072-016-0110-4 |
| P2888 | exact match | https://scigraph.springernature.com/pub.10.1186/s13072-016-0110-4 |
| P932 | PMC publication ID | 5240408 |
| P698 | PubMed publication ID | 28115992 |
| P50 | author | Gemma Danks | Q58190046 |
| John Manak | Q68533442 | ||
| Eric M Thompson | Q89406904 | ||
| P2093 | author name string | Stephen Butcher | |
| Pavla Navratilova | |||
| Abby Long | |||
| P2860 | cites work | Genomewide analysis of PRC1 and PRC2 occupancy identifies two classes of bivalent domains | Q21092474 |
| Translating the Histone Code | Q22065840 | ||
| Tunicates and not cephalochordates are the closest living relatives of vertebrates | Q22337256 | ||
| The Oikopleura coenocyst, a unique chordate germ cell permitting rapid, extensive modulation of oocyte production | Q22337304 | ||
| Genome-wide maps of chromatin state in pluripotent and lineage-committed cells | Q24632506 | ||
| Integrative epigenomic mapping defines four main chromatin states in Arabidopsis | Q24632836 | ||
| Combinatorial patterns of histone acetylations and methylations in the human genome | Q24647290 | ||
| Promoter features related to tissue specificity as measured by Shannon entropy | Q24797793 | ||
| Single-nucleosome mapping of histone modifications in S. cerevisiae | Q24816848 | ||
| Dosage compensation of the sex chromosomes | Q27027715 | ||
| The transcriptional coactivators p300 and CBP are histone acetyltransferases | Q27860843 | ||
| High-resolution profiling of histone methylations in the human genome | Q27860906 | ||
| Role of histone H3 lysine 27 methylation in Polycomb-group silencing | Q28131795 | ||
| Suv39h-mediated histone H3 lysine 9 methylation directs DNA methylation to major satellite repeats at pericentric heterochromatin | Q28187783 | ||
| Genome regulation by polycomb and trithorax proteins | Q28289984 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate | Q28334396 | ||
| Methylation of histone H3 on lysine 79 associates with a group of replication origins and helps limit DNA replication once per cell cycle | Q28533664 | ||
| Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans | Q29394946 | ||
| Mapping and analysis of chromatin state dynamics in nine human cell types | Q29547552 | ||
| Discovery and characterization of chromatin states for systematic annotation of the human genome | Q29614411 | ||
| Genomic maps and comparative analysis of histone modifications in human and mouse | Q29614418 | ||
| Genome-wide map of nucleosome acetylation and methylation in yeast | Q29614525 | ||
| Dot1p modulates silencing in yeast by methylation of the nucleosome core | Q29614855 | ||
| Integrative analysis of 111 reference human epigenomes | Q29615565 | ||
| Mass-spectrometry-based draft of the human proteome | Q29617249 | ||
| A draft map of the human proteome | Q29617250 | ||
| Native chromatin preparation and Illumina/Solexa library construction | Q33530599 | ||
| Transgenerational epigenetic inheritance: myths and mechanisms | Q33606597 | ||
| Histone variant innovation in a rapidly evolving chordate lineage | Q33960896 | ||
| Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration | Q33996690 | ||
| TrxG and PcG proteins but not methylated histones remain associated with DNA through replication | Q34033300 | ||
| Spliced-leader RNA trans splicing in a chordate, Oikopleura dioica, with a compact genome | Q39757380 | ||
| Embryonic expression of endogenous retroviral RNAs in somatic tissues adjacent to the Oikopleura germline | Q39771374 | ||
| Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation. | Q40406465 | ||
| Histone H3 Serine 28 Is Essential for Efficient Polycomb-Mediated Gene Repression in Drosophila | Q40907634 | ||
| Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells | Q41440879 | ||
| Trans-splicing in metazoans: A link to translational control? | Q41609579 | ||
| Trans-splicing and operons in metazoans: translational control in maternally regulated development and recovery from growth arrest. | Q41668418 | ||
| The COMPASS subunit Spp1 links histone methylation to initiation of meiotic recombination | Q41792125 | ||
| H3K4me3 breadth is linked to cell identity and transcriptional consistency. | Q41918596 | ||
| Antagonism between MES-4 and Polycomb repressive complex 2 promotes appropriate gene expression in C. elegans germ cells | Q41960310 | ||
| Retroelement dynamics and a novel type of chordate retrovirus-like element in the miniature genome of the tunicate Oikopleura dioica | Q42631494 | ||
| Dynamic changes in histone acetylation regulate origins of DNA replication | Q42700642 | ||
| Plasticity of histone modifications across the invertebrate to vertebrate transition: histone H3 lysine 4 trimethylation in heterochromatin | Q42816619 | ||
| Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates | Q42846668 | ||
| Gene repression. H3K27me and PRC2 transmit a memory of repression across generations and during development | Q43015490 | ||
| A subset of the histone H3 lysine 9 methyltransferases Suv39h1, G9a, GLP, and SETDB1 participate in a multimeric complex. | Q43175284 | ||
| Human genes with CpG island promoters have a distinct transcription-associated chromatin organization | Q43241281 | ||
| Sequence of Dictyostelium DIRS-1: an apparent retrotransposon with inverted terminal repeats and an internal circle junction sequence | Q44046210 | ||
| Polycomb Cbx family members mediate the balance between haematopoietic stem cell self-renewal and differentiation. | Q44197854 | ||
| Patterning through differential endoreduplication in epithelial organogenesis of the chordate, Oikopleura dioica | Q44230486 | ||
| In vivo epigenomic profiling of germ cells reveals germ cell molecular signatures | Q44261467 | ||
| Oocyte selection is concurrent with meiosis resumption in the coenocystic oogenesis of Oikopleura | Q46323556 | ||
| Nonprocessive methylation by Dot1 leads to functional redundancy of histone H3K79 methylation states | Q46567995 | ||
| Multigenerational chromatin marks: no enzymes need apply. | Q50625025 | ||
| The cytoskeleton organizes germ nuclei with divergent fates and asynchronous cycles in a common cytoplasm during oogenesis in the chordate Oikopleura. | Q50642437 | ||
| Gene silencing triggers polycomb repressive complex 2 recruitment to CpG islands genome wide. | Q50650644 | ||
| Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development. | Q51827112 | ||
| Imprinted X inactivation maintained by a mouse Polycomb group gene | Q63407354 | ||
| Expansion of cyclin D and CDK1 paralogs in Oikopleura dioica, a chordate employing diverse cell cycle variants | Q84513036 | ||
| The histone H3 lysine 9 methyltransferases G9a and GLP regulate polycomb repressive complex 2-mediated gene silencing | Q34039506 | ||
| PRC1 complex diversity: where is it taking us? | Q34041572 | ||
| Human LSD2/KDM1b/AOF1 regulates gene transcription by modulating intragenic H3K4me2 methylation. | Q34128674 | ||
| Systematic protein location mapping reveals five principal chromatin types in Drosophila cells | Q34141226 | ||
| The histone H4 Lys 20 methyltransferase PR-Set7 regulates replication origins in mammalian cells. | Q34144213 | ||
| Polycomb-dependent H3K27me1 and H3K27me2 regulate active transcription and enhancer fidelity | Q34388755 | ||
| H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress. | Q34439368 | ||
| Comparative analysis of metazoan chromatin organization | Q34486035 | ||
| Broad chromosomal domains of histone modification patterns in C. elegans | Q34548272 | ||
| Histone code pathway involving H3 S28 phosphorylation and K27 acetylation activates transcription and antagonizes polycomb silencing | Q34582928 | ||
| Development of a chordate anterior-posterior axis without classical retinoic acid signaling | Q34614191 | ||
| Comprehensive analysis of the chromatin landscape in Drosophila melanogaster | Q35030499 | ||
| Transcriptional control of a whole chromosome: emerging models for dosage compensation | Q35125239 | ||
| Immunogenetics. Chromatin state dynamics during blood formation | Q35546671 | ||
| Rapid de novo evolution of X chromosome dosage compensation in Silene latifolia, a plant with young sex chromosomes. | Q35894365 | ||
| In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells | Q35914920 | ||
| Recognition models to predict DNA-binding specificities of homeodomain proteins | Q36022098 | ||
| OikoBase: a genomics and developmental transcriptomics resource for the urochordate Oikopleura dioica. | Q36491406 | ||
| ChromHMM: automating chromatin-state discovery and characterization | Q36625108 | ||
| Regulation of the different chromatin states of autosomes and X chromosomes in the germ line of C. elegans | Q36731933 | ||
| MES-4: an autosome-associated histone methyltransferase that participates in silencing the X chromosomes in the C. elegans germ line. | Q36731942 | ||
| Global patterns of histone modifications | Q36743042 | ||
| Culture optimization for the emergent zooplanktonic model organism Oikopleura dioica | Q37116994 | ||
| Stable Caenorhabditis elegans chromatin domains separate broadly expressed and developmentally regulated genes | Q37417986 | ||
| Understanding the language of Lys36 methylation at histone H3. | Q37672319 | ||
| Transgenerational epigenetics in the germline cycle of Caenorhabditis elegans | Q37681231 | ||
| Evolutionary conservation of the eumetazoan gene regulatory landscape | Q37683468 | ||
| Rapid and pervasive changes in genome-wide enhancer usage during mammalian development | Q37706673 | ||
| DNA methylation and the formation of heterochromatin in Neurospora crassa | Q37734874 | ||
| Polycomb group proteins: repression in 3D. | Q37906862 | ||
| Chromatin and epigenetic features of long-range gene regulation | Q38114411 | ||
| Chromatin dynamics during spermiogenesis. | Q38148897 | ||
| Ringo--an R/Bioconductor package for analyzing ChIP-chip readouts | Q38300515 | ||
| Trimethylation of histone H3 lysine 36 by human methyltransferase PRDM9 protein | Q39007308 | ||
| P304 | page(s) | 3 | |
| P577 | publication date | 2017-01-17 | |
| P1433 | published in | Epigenetics & Chromatin | Q15765513 |
| P1476 | title | Sex-specific chromatin landscapes in an ultra-compact chordate genome | |
| P478 | volume | 10 |
| Q51417627 | ChIP-ping the branches of the tree: functional genomics and the evolution of eukaryotic gene regulation. |
| Q50421817 | Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate. |
| Q90622860 | Oikopleura dioica: An Emergent Chordate Model to Study the Impact of Gene Loss on the Evolution of the Mechanisms of Development |
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