| scholarly article | Q13442814 |
| P2093 | author name string | Nicole K Clay | |
| Brenden Barco | |||
| P2860 | cites work | Universally sloppy parameter sensitivities in systems biology models | Q21145658 |
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| The incoherent feed-forward loop can generate non-monotonic input functions for genes | Q24644242 | ||
| Glucosinolate metabolites required for an Arabidopsis innate immune response | Q24645375 | ||
| Design and implementation of three incoherent feed-forward motif based biological concentration sensors | Q24648654 | ||
| Tryptophan-derived secondary metabolites in Arabidopsis thaliana confer non-host resistance to necrotrophic Plectosphaerella cucumerina fungi | Q43090455 | ||
| Disease resistance of Arabidopsis to Phytophthora brassicae is established by the sequential action of indole glucosinolates and camalexin | Q43129338 | ||
| A kinetic model describes metabolic response to perturbations and distribution of flux control in the benzenoid network of Petunia hybrida | Q43195606 | ||
| Tryptophan-derived metabolites are required for antifungal defense in the Arabidopsis mlo2 mutant. | Q43214478 | ||
| Genomic signatures of specialized metabolism in plants | Q43593666 | ||
| Transcriptome meets metabolome: hierarchical and metabolic regulation of the glycolytic pathway | Q43668049 | ||
| Quantitative nature of Arabidopsis responses during compatible and incompatible interactions with the bacterial pathogen Pseudomonas syringae | Q44302174 | ||
| Transcriptional, translational and metabolic regulation of glycolysis in Lactococcus lactis subsp. cremoris MG 1363 grown in continuous acidic cultures | Q44509837 | ||
| Genome-wide characterization of the lignification toolbox in Arabidopsis | Q44652208 | ||
| Role of transcriptional regulation in controlling fluxes in central carbon metabolism of Saccharomyces cerevisiae. A chemostat culture study. | Q44664104 | ||
| Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis | Q44693056 | ||
| Characterisation of an Arabidopsis-Leptosphaeria maculans pathosystem: resistance partially requires camalexin biosynthesis and is independent of salicylic acid, ethylene and jasmonic acid signalling | Q44693257 | ||
| Poplar MYB115 and MYB134 Transcription Factors Regulate Proanthocyanidin Synthesis and Structure | Q44871331 | ||
| The Arabidopsis ATR1 Myb transcription factor controls indolic glucosinolate homeostasis | Q45173545 | ||
| Hierarchical and metabolic regulation of glucose influx in starved Saccharomyces cerevisiae. | Q46394354 | ||
| A synthetic multicellular system for programmed pattern formation | Q46461387 | ||
| Promoter-based integration in plant defense regulation | Q46508723 | ||
| HAG2/MYB76 and HAG3/MYB29 exert a specific and coordinated control on the regulation of aliphatic glucosinolate biosynthesis in Arabidopsis thaliana | Q46879795 | ||
| The bHLH transcription factor HBI1 mediates the trade-off between growth and pathogen-associated molecular pattern-triggered immunity in Arabidopsis | Q46930204 | ||
| The transcriptional activator Pti4 is required for the recruitment of a repressosome nucleated by repressor SEBF at the potato PR-10a gene | Q46965427 | ||
| Conservation and clade-specific diversification of pathogen-inducible tryptophan and indole glucosinolate metabolism in Arabidopsis thaliana relatives | Q47279284 | ||
| Arabidopsis basic helix-loop-helix transcription factors MYC2, MYC3, and MYC4 regulate glucosinolate biosynthesis, insect performance, and feeding behavior. | Q47781748 | ||
| More than 80R2R3‐MYB regulatory genes in the genome of Arabidopsis thaliana | Q47970811 | ||
| Superroot, a recessive mutation in Arabidopsis, confers auxin overproduction. | Q49167530 | ||
| Mutualistic root endophytism is not associated with the reduction of saprotrophic traits and requires a noncompromised plant innate immunity. | Q50278906 | ||
| Biochemical analyses of indole-3-acetaldoxime-dependent auxin biosynthesis in Arabidopsis | Q24648978 | ||
| A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli | Q24672559 | ||
| Trp-dependent auxin biosynthesis in Arabidopsis: involvement of cytochrome P450s CYP79B2 and CYP79B3 | Q24682557 | ||
| Structure and function of the feed-forward loop network motif | Q24683513 | ||
| Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network | Q24799473 | ||
| Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach | Q24804022 | ||
| Plant metabolic modeling: achieving new insight into metabolism and metabolic engineering | Q26852422 | ||
| Transcriptional Dynamics Driving MAMP-Triggered Immunity and Pathogen Effector-Mediated Immunosuppression in Arabidopsis Leaves Following Infection with Pseudomonas syringae pv tomato DC3000 | Q27318654 | ||
| Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana | Q27860555 | ||
| A new mathematical model for relative quantification in real-time RT-PCR | Q27860781 | ||
| Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
| The plant immune system | Q28131801 | ||
| The galactose regulon of Escherichia coli | Q28239207 | ||
| Arabidopsis mutants in the C-S lyase of glucosinolate biosynthesis establish a critical role for indole-3-acetaldoxime in auxin homeostasis | Q28243904 | ||
| WRKY transcription factors | Q28277183 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| A glucosinolate metabolism pathway in living plant cells mediates broad-spectrum antifungal defense | Q28304506 | ||
| CYP83B1, a cytochrome P450 at the metabolic branch point in auxin and indole glucosinolate biosynthesis in Arabidopsis | Q28346118 | ||
| The involvement of two p450 enzymes, CYP83B1 and CYP83A1, in auxin homeostasis and glucosinolate biosynthesis | Q28351152 | ||
| Genetic control of natural variation in Arabidopsis glucosinolate accumulation | Q28366688 | ||
| Non-monotonic Response to Monotonic Stimulus: Regulation of Glyoxylate Shunt Gene-Expression Dynamics in Mycobacterium tuberculosis | Q28550312 | ||
| The evolution of WRKY transcription factors | Q28652748 | ||
| Cis-regulatory elements: molecular mechanisms and evolutionary processes underlying divergence | Q29032100 | ||
| Network motifs: simple building blocks of complex networks | Q29547340 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| Network motifs: theory and experimental approaches | Q29615325 | ||
| Identification of functional elements and regulatory circuits by Drosophila modENCODE | Q29617551 | ||
| Defining network topologies that can achieve biochemical adaptation. | Q29999690 | ||
| The multifunctional enzyme CYP71B15 (PHYTOALEXIN DEFICIENT3) converts cysteine-indole-3-acetonitrile to camalexin in the indole-3-acetonitrile metabolic network of Arabidopsis thaliana | Q30319074 | ||
| The rise of chemodiversity in plants | Q30418660 | ||
| A Maize Gene Regulatory Network for Phenolic Metabolism | Q50475213 | ||
| Metabolic and evolutionary costs of herbivory defense: systems biology of glucosinolate synthesis | Q51327446 | ||
| Remarks on feedforward circuits, adaptation, and pulse memory | Q51768035 | ||
| Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis | Q52062295 | ||
| Entry mode-dependent function of an indole glucosinolate pathway in Arabidopsis for nonhost resistance against anthracnose pathogens. | Q52601902 | ||
| Network Motifs Capable of Decoding Transcription Factor Dynamics. | Q52684343 | ||
| Feed-forward loops and diamond motifs lead to tunable transmission of information in the frequency domain. | Q53359765 | ||
| Do transcription factors play special roles in adaptive variation? | Q53455910 | ||
| Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant | Q56889474 | ||
| A P450-centric view of plant evolution | Q56989979 | ||
| Antagonistic regulation of growth and immunity by the Arabidopsis basic helix-loop-helix transcription factor homolog of brassinosteroid enhanced expression2 interacting with increased leaf inclination1 binding bHLH1 | Q57467957 | ||
| An incoherent feed-forward loop switches the Arabidopsis clock rapidly between two hysteretic states | Q58733894 | ||
| Differential metabolic and coexpression networks of plant metabolism | Q59723642 | ||
| Arabidopsis WRKY33 is a key transcriptional regulator of hormonal and metabolic responses toward Botrytis cinerea infection | Q60017750 | ||
| Signal integration in the galactose network of Escherichia coli | Q62563607 | ||
| Hierarchical Transcription Factor and Chromatin Binding Network for Wood Formation in Black Cottonwood (Populus trichocarpa) | Q64234767 | ||
| A disease resistance gene in Arabidopsis with specificity for two different pathogen avirulence genes | Q72147791 | ||
| Phytochemistry meets genome analysis, and beyond | Q73010068 | ||
| A glucocorticoid-mediated transcriptional induction system in transgenic plants | Q73232784 | ||
| Deficiency in phytoalexin production causes enhanced susceptibility of Arabidopsis thaliana to the fungus Alternaria brassicicola | Q78216284 | ||
| Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens | Q79292870 | ||
| The Botany Array Resource: e-Northerns, Expression Angling, and promoter analyses | Q81859888 | ||
| MYB46 and MYB83 Bind to the SMRE Sites and Directly Activate a Suite of Transcription Factors and Secondary Wall Biosynthetic Genes | Q83131843 | ||
| Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression | Q86399124 | ||
| MYB34, MYB51, and MYB122 distinctly regulate indolic glucosinolate biosynthesis in Arabidopsis thaliana | Q87108858 | ||
| Evolution of Glucosinolate Diversity via Whole-Genome Duplications, Gene Rearrangements, and Substrate Promiscuity | Q91616025 | ||
| Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm | Q91823979 | ||
| Expansion of a core regulon by transposable elements promotes Arabidopsis chemical diversity and pathogen defense | Q92353016 | ||
| Metabolic engineering of the plant primary–secondary metabolism interface | Q37818724 | ||
| Co-expression and co-responses: within and beyond transcription | Q38060721 | ||
| Can genetic engineering of lignin deposition be accomplished without an unacceptable yield penalty? | Q38066303 | ||
| Regulation of specialized metabolism by WRKY transcription factors | Q38287110 | ||
| SND1 transcription factor-directed quantitative functional hierarchical genetic regulatory network in wood formation in Populus trichocarpa. | Q38482819 | ||
| Regulation of plant secondary metabolism and associated specialized cell development by MYBs and bHLHs | Q38939483 | ||
| bHLH05 is an interaction partner of MYB51 and a novel regulator of glucosinolate biosynthesis in Arabidopsis | Q38972972 | ||
| Targets of AtWRKY6 regulation during plant senescence and pathogen defense. | Q39859601 | ||
| The transcript and metabolite networks affected by the two clades of Arabidopsis glucosinolate biosynthesis regulators | Q40040144 | ||
| Regulation of Pathogen-Triggered Tryptophan Metabolism in Arabidopsis thaliana by MYB Transcription Factors and Indole Glucosinolate Conversion Products. | Q40820956 | ||
| Inference of the Arabidopsis lateral root gene regulatory network suggests a bifurcation mechanism that defines primordia flanking and central zones | Q40973379 | ||
| Negative regulation of ABA signaling by WRKY33 is critical for Arabidopsis immunity towards Botrytis cinerea 2100. | Q41551345 | ||
| Incoherent feedforward control governs adaptation of activated ras in a eukaryotic chemotaxis pathway | Q41836222 | ||
| Minimum set of cytochromes P450 for reconstituting the biosynthesis of camalexin, a major Arabidopsis antibiotic | Q41934305 | ||
| The R2R3-MYB transcription factor HAG1/MYB28 is a regulator of methionine-derived glucosinolate biosynthesis in Arabidopsis thaliana | Q42033227 | ||
| The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana | Q42033543 | ||
| Arabidopsis MAP kinase 4 regulates gene expression through transcription factor release in the nucleus | Q42405759 | ||
| The transcriptional innate immune response to flg22. Interplay and overlap with Avr gene-dependent defense responses and bacterial pathogenesis | Q42462694 | ||
| Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity. | Q42503475 | ||
| Resistance to Botrytis cinerea induced in Arabidopsis by elicitors is independent of salicylic acid, ethylene, or jasmonate signaling but requires PHYTOALEXIN DEFICIENT3. | Q42510135 | ||
| SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis | Q42512746 | ||
| A new cyanogenic metabolite in Arabidopsis required for inducible pathogen defence | Q42607779 | ||
| Simple network motifs can capture key characteristics of the floral transition in Arabidopsis | Q42742949 | ||
| The transcriptional regulator BZR1 mediates trade-off between plant innate immunity and growth | Q42771047 | ||
| Transcriptional reprogramming regulated by WRKY18 and WRKY40 facilitates powdery mildew infection of Arabidopsis. | Q42782169 | ||
| Spatiotemporal control of gene expression with pulse-generating networks. | Q30579452 | ||
| New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana | Q31113924 | ||
| The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response | Q33321940 | ||
| Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning | Q33348141 | ||
| Interlocking feedback loops govern the dynamic behavior of the floral transition in Arabidopsis | Q33355561 | ||
| Simple molecular networks that respond optimally to time-periodic stimulation | Q33414399 | ||
| The evolution of control and distribution of adaptive mutations in a metabolic pathway | Q33688870 | ||
| Cytochrome P450 CYP79B2 from Arabidopsis catalyzes the conversion of tryptophan to indole-3-acetaldoxime, a precursor of indole glucosinolates and indole-3-acetic acid. | Q33912074 | ||
| The chemical diversity and distribution of glucosinolates and isothiocyanates among plants | Q33934528 | ||
| Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data | Q34085568 | ||
| The incoherent feedforward loop can provide fold-change detection in gene regulation | Q34087717 | ||
| Activation of defense response pathways by OGs and Flg22 elicitors in Arabidopsis seedlings | Q34197314 | ||
| Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis. | Q34200286 | ||
| Evolution of secondary metabolites from an ecological and molecular phylogenetic perspective | Q34226295 | ||
| Caenorhabditis elegans metabolic gene regulatory networks govern the cellular economy | Q34258700 | ||
| The Coherent Feedforward Loop Serves as a Sign-sensitive Delay Element in Transcription Networks | Q34275513 | ||
| Camalexin is synthesized from indole-3-acetaldoxime, a key branching point between primary and secondary metabolism in Arabidopsis | Q34333005 | ||
| A regulon conserved in monocot and dicot plants defines a functional module in antifungal plant immunity. | Q34411369 | ||
| An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors | Q34466180 | ||
| Pre- and postinvasion defenses both contribute to nonhost resistance in Arabidopsis. | Q34468523 | ||
| Unraveling the complexity of flux regulation: a new method demonstrated for nutrient starvation in Saccharomyces cerevisiae | Q34479043 | ||
| The incoherent feed-forward loop accelerates the response-time of the gal system of Escherichia coli | Q34483407 | ||
| From waste products to ecochemicals: fifty years research of plant secondary metabolism | Q34584580 | ||
| Diverse transcription factor binding features revealed by genome-wide ChIP-seq in C. elegans | Q34625961 | ||
| MYB58 and MYB63 are transcriptional activators of the lignin biosynthetic pathway during secondary cell wall formation in Arabidopsis | Q34914934 | ||
| An Arabidopsis gene regulatory network for secondary cell wall synthesis | Q35099051 | ||
| The conserved transcription factors, MYB115 and MYB118, control expression of the newly evolved benzoyloxy glucosinolate pathway in Arabidopsis thaliana | Q35599921 | ||
| The role of MYB34, MYB51 and MYB122 in the regulation of camalexin biosynthesis in Arabidopsis thaliana | Q35992336 | ||
| Plant metabolic diversity: a regulatory perspective. | Q36039760 | ||
| Hierarchical modularity in ERα transcriptional network is associated with distinct functions and implicates clinical outcomes. | Q36406939 | ||
| Evolution of flux control in the glucosinolate pathway in Arabidopsis thaliana. | Q36474948 | ||
| Noise propagation with interlinked feed-forward pathways | Q36748148 | ||
| Fold change of nuclear NF-κB determines TNF-induced transcription in single cells | Q37688649 | ||
| Regulating a master regulator: establishing tissue-specific gene expression in skeletal muscle | Q37780648 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | ImageJ | Q1659584 |
| P304 | page(s) | 1775 | |
| P577 | publication date | 2019-01-01 | |
| P1433 | published in | Frontiers in Plant Science | Q27723840 |
| P1476 | title | Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors | |
| P478 | volume | 10 |
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