| scholarly article | Q13442814 |
| P50 | author | Vanessa Vermeirssen | Q58245557 |
| Jonas Defoort | Q87038109 | ||
| P2093 | author name string | Yves Van de Peer | |
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| Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean | Q41276536 | ||
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| Novel insights into the function of Arabidopsis R2R3-MYB transcription factors regulating aliphatic glucosinolate biosynthesis | Q44680177 | ||
| Border control--a membrane-linked interactome of Arabidopsis | Q44998219 | ||
| Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress | Q46167127 | ||
| HAB1-SWI3B interaction reveals a link between abscisic acid signaling and putative SWI/SNF chromatin-remodeling complexes in Arabidopsis | Q46228832 | ||
| PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics | Q46274918 | ||
| p97 Homologs from Caenorhabditis elegans, CDC-48.1 and CDC-48.2, suppress the aggregate formation of huntingtin exon1 containing expanded polyQ repeat | Q46377791 | ||
| Promoter-based integration in plant defense regulation | Q46508723 | ||
| Gene Duplicability of Core Genes Is Highly Consistent across All Angiosperms. | Q46613613 | ||
| The C. elegans eyes absent ortholog EYA-1 is required for tissue differentiation and plays partially redundant roles with PAX-6. | Q46696437 | ||
| A gene-centered C. elegans protein-DNA interaction network | Q47594680 | ||
| Correlating Protein–DNA and Protein–Protein Interaction Networks | Q47597247 | ||
| SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development | Q48127493 | ||
| ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development | Q49093593 | ||
| The cell biology of cellulose synthesis | Q38192039 | ||
| Overview of gene structure in C. elegans | Q38264931 | ||
| A functional and evolutionary perspective on transcription factor binding in Arabidopsis thaliana. | Q38303263 | ||
| The miR156/SPL Module, a Regulatory Hub and Versatile Toolbox, Gears up Crops for Enhanced Agronomic Traits | Q38330861 | ||
| Evidence for network evolution in an Arabidopsis interactome map. | Q38367823 | ||
| Towards Consensus Gene Ages | Q38446542 | ||
| CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations | Q38496806 | ||
| Revisiting ancestral polyploidy in plants | Q38684972 | ||
| Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants. | Q38730729 | ||
| Mechanisms of DNA-binding specificity and functional gene regulation by transcription factors. | Q38863533 | ||
| Diversity, expansion, and evolutionary novelty of plant DNA-binding transcription factor families | Q38927099 | ||
| Phylogenomic analysis of gene co-expression networks reveals the evolution of functional modules. | Q38978558 | ||
| A Mechanism for Sustained Cellulose Synthesis during Salt Stress | Q38993571 | ||
| Transcription factor CBF4 is a regulator of drought adaptation in Arabidopsis | Q39038940 | ||
| The evolutionary significance of polyploidy | Q39305536 | ||
| Co-expression of the stress-inducible zinc finger homeodomain ZFHD1 and NAC transcription factors enhances expression of the ERD1 gene in Arabidopsis | Q39532147 | ||
| A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions | Q40270109 | ||
| Evolution of Cis-Regulatory Elements and Regulatory Networks in Duplicated Genes of Arabidopsis. | Q40423252 | ||
| Duplication-divergence model of protein interaction network. | Q40599685 | ||
| Switch-like Transitions Insulate Network Motifs to Modularize Biological Networks | Q40959231 | ||
| Integrative approaches for finding modular structure in biological networks | Q26824897 | ||
| Emergence of Scaling in Random Networks | Q27037290 | ||
| p38 MAPK regulates expression of immune response genes and contributes to longevity in C. elegans | Q27315174 | ||
| Coordinate regulation of lipid metabolism by novel nuclear receptor partnerships | Q27334219 | ||
| ETS-4 is a transcriptional regulator of life span in Caenorhabditis elegans | Q27346260 | ||
| Transcriptional regulatory networks in Saccharomyces cerevisiae | Q27860846 | ||
| Network biology: understanding the cell's functional organization | Q27861027 | ||
| The genetic landscape of a cell | Q28131628 | ||
| Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events | Q28186749 | ||
| The BioGRID interaction database: 2015 update | Q28252221 | ||
| A phylostratigraphy approach to uncover the genomic history of major adaptations in metazoan lineages | Q28258253 | ||
| Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project | Q28301622 | ||
| Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components | Q28476223 | ||
| miRBase: annotating high confidence microRNAs using deep sequencing data | Q28660701 | ||
| Nonrandom divergence of gene expression following gene and genome duplications in the flowering plant Arabidopsis thaliana | Q28768184 | ||
| Network motifs: simple building blocks of complex networks | Q29547340 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks | Q29547427 | ||
| Global analysis of protein phosphorylation in yeast | Q29615057 | ||
| Network motifs: theory and experimental approaches | Q29615325 | ||
| Architecture of the human regulatory network derived from ENCODE data | Q29617046 | ||
| Large-scale event extraction from literature with multi-level gene normalization | Q30486109 | ||
| Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits | Q30580556 | ||
| A gateway-compatible yeast one-hybrid system. | Q30841733 | ||
| Integrated assessment and prediction of transcription factor binding | Q33247445 | ||
| Matrix and Steiner-triple-system smart pooling assays for high-performance transcription regulatory network mapping | Q33288695 | ||
| Global and local architecture of the mammalian microRNA-transcription factor regulatory network. | Q33290828 | ||
| Evolutionary models for formation of network motifs and modularity in the Saccharomyces transcription factor network | Q33304212 | ||
| The CRYPTOCHROME1-dependent response to excess light is mediated through the transcriptional activators ZINC FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM LIKE1 and ZML2 in Arabidopsis. | Q33353892 | ||
| Role of SEPALLATA3 (SEP3) as a downstream gene of miR156-SPL3-FT circuitry in ambient temperature-responsive flowering | Q33354114 | ||
| Age-dependent evolution of the yeast protein interaction network suggests a limited role of gene duplication and divergence | Q33388239 | ||
| Systematic mapping of genetic interaction networks | Q33497464 | ||
| Enhanced yeast one-hybrid assays for high-throughput gene-centered regulatory network mapping. | Q35607409 | ||
| Genome-wide identification of lineage-specific genes within Caenorhabditis elegans | Q35696128 | ||
| The impact of the absence of aliphatic glucosinolates on water transport under salt stress in Arabidopsis thaliana | Q35851787 | ||
| Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network | Q35854821 | ||
| Function does not follow form in gene regulatory circuits | Q35973469 | ||
| The Arabidopsis information resource: Making and mining the "gold standard" annotated reference plant genome. | Q35985588 | ||
| New genes drive the evolution of gene interaction networks in the human and mouse genomes | Q36111854 | ||
| The architecture of the gene regulatory networks of different tissues | Q36218037 | ||
| A global analysis of genetic interactions in Caenorhabditis elegans | Q36640170 | ||
| Transcriptome profiling of the C. elegans Rb ortholog reveals diverse developmental roles | Q37188176 | ||
| Extensive rewiring and complex evolutionary dynamics in a C. elegans multiparameter transcription factor network | Q37224364 | ||
| The C. elegans Snail homolog CES-1 can activate gene expression in vivo and share targets with bHLH transcription factors | Q37235372 | ||
| Integration of new genes into cellular networks, and their structural maturation | Q37320615 | ||
| Identification of breast cancer patients based on human signaling network motifs | Q37347804 | ||
| The NHR-8 nuclear receptor regulates cholesterol and bile acid homeostasis in C. elegans | Q37540380 | ||
| Expression of the MYB transcription factor gene BplMYB46 affects abiotic stress tolerance and secondary cell wall deposition in Betula platyphylla | Q37598078 | ||
| Mechanisms of transcription factor evolution in Metazoa | Q37623770 | ||
| Network motifs in integrated cellular networks of transcription-regulation and protein-protein interaction | Q37645904 | ||
| miRTarBase update 2014: an information resource for experimentally validated miRNA-target interactions | Q37661923 | ||
| Transcription factors: from enhancer binding to developmental control | Q38032407 | ||
| Transcriptional regulation of gene expression in C. elegans | Q38117116 | ||
| miR319a targeting of TCP4 is critical for petal growth and development in Arabidopsis | Q33563960 | ||
| Genome-wide identification, evolution and expression analysis of the grape (Vitis vinifera L.) zinc finger-homeodomain gene family | Q33580490 | ||
| Systematic interpretation of genetic interactions using protein networks | Q33622989 | ||
| A comparison of performance of plant miRNA target prediction tools and the characterization of features for genome-wide target prediction | Q33669266 | ||
| Evidence for the additions of clustered interacting nodes during the evolution of protein interaction networks from network motifs | Q33906212 | ||
| A comprehensive analysis of gene expression changes provoked by bacterial and fungal infection in C. elegans | Q33908204 | ||
| Functional modularity of nuclear hormone receptors in a Caenorhabditis elegans metabolic gene regulatory network | Q33932567 | ||
| Modeling gene and genome duplications in eukaryotes | Q33936694 | ||
| Biological interaction networks are conserved at the module level | Q34001171 | ||
| Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data | Q34085568 | ||
| Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms | Q34099016 | ||
| A regulatory cascade of three transcription factors in a single specific neuron, DVC, in Caenorhabditis elegans. | Q34114145 | ||
| The MYB46/MYB83-mediated transcriptional regulatory programme is a gatekeeper of secondary wall biosynthesis. | Q34331465 | ||
| PlantTFDB 3.0: a portal for the functional and evolutionary study of plant transcription factors. | Q34381452 | ||
| WormBase 2014: new views of curated biology | Q34382790 | ||
| Comparative analysis of regulatory information and circuits across distant species | Q34435561 | ||
| AGRIS: the Arabidopsis Gene Regulatory Information Server, an update. | Q34456259 | ||
| An Arabidopsis Transcriptional Regulatory Map Reveals Distinct Functional and Evolutionary Features of Novel Transcription Factors | Q34466180 | ||
| Dissecting the human protein-protein interaction network via phylogenetic decomposition | Q34552423 | ||
| synMuv B proteins antagonize germline fate in the intestine and ensure C. elegans survival | Q34592502 | ||
| Roles of the developmental regulator unc-62/Homothorax in limiting longevity in Caenorhabditis elegans | Q34611226 | ||
| Novel genes exhibit distinct patterns of function acquisition and network integration | Q34613793 | ||
| High spontaneous rate of gene duplication in Caenorhabditis elegans | Q34667651 | ||
| Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network | Q34676654 | ||
| The index-based subgraph matching algorithm (ISMA): fast subgraph enumeration in large networks using optimized search trees | Q34688684 | ||
| An Arabidopsis gene regulatory network for secondary cell wall synthesis | Q35099051 | ||
| Brassinosteroids can regulate cellulose biosynthesis by controlling the expression of CESA genes in Arabidopsis | Q35207007 | ||
| NHR-23 dependent collagen and hedgehog-related genes required for molting. | Q35382002 | ||
| P275 | copyright license | Creative Commons Attribution-NonCommercial 4.0 International | Q34179348 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | Cytoscape | Q3699942 |
| P433 | issue | 13 | |
| P407 | language of work or name | English | Q1860 |
| P1104 | number of pages | 24 | |
| P304 | page(s) | 6480-6503 | |
| P577 | publication date | 2018-07-01 | |
| P1433 | published in | Nucleic Acids Research | Q135122 |
| P1476 | title | Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant | |
| P478 | volume | 46 |
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| Q89820747 | Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors |
| Q94460439 | Intrinsic limitations in mainstream methods of identifying network motifs in biology |
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