Network biology: understanding the cell's functional organization (scientific article (publication date: February 2004))

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Q35808443	Between "design" and "bricolage": genetic networks, levels of selection, and adaptive evolution
Q48195764	Beyond topology: coevolution of structure and flux in metabolic networks
Q36086958	BiCAMWI: A Genetic-Based Biclustering Algorithm for Detecting Dynamic Protein Complexes
Q36923523	BicNET: Flexible module discovery in large-scale biological networks using biclustering
Q36188889	Biconnectivity of the cellular metabolism: A cross-species study and its implication for human diseases
Q27027248	Big data: the next frontier for innovation in therapeutics and healthcare
Q35789759	Big-data-based edge biomarkers: study on dynamical drug sensitivity and resistance in individuals.
Q34091003	BinTree seeking: a novel approach to mine both bi-sparse and cohesive modules in protein interaction networks
Q91782833	BioNetStat: A Tool for Biological Networks Differential Analysis
Q27902315	BioTriangle: a web-accessible platform for generating various molecular representations for chemicals, proteins, DNAs/RNAs and their interactions
Q46716336	Biochemistry. Proteins in a small world
Q28710577	Bioenergy grass feedstock: current options and prospects for trait improvement using emerging genetic, genomic, and systems biology toolkits
Q79675814	Bioinformatic networks: molecular reticles for pinpointing pharmacological target selection
Q37307412	Bioinformatic primer for clinical and translational science
Q31162111	Bioinformatic tools for inferring functional information from plant microarray data II: Analysis beyond single gene
Q92557186	Bioinformatics analysis identifies potential chemoresistance-associated genes across multiple types of cancer
Q33420619	Bioinformatics analysis of mass spectrometry-based proteomics data sets
Q95814499	Bioinformatics analysis of the early inflammatory response in a rat thermal injury model
Q27005417	Bioinformatics and systems biology
Q37808952	Bioinformatics in bioinorganic chemistry
Q90723279	Biological Network Approaches and Applications in Rare Disease Studies
Q37439706	Biological Resource Centers and Systems Biology
Q38517285	Biological context networks: a mosaic view of the interactome
Q45847143	Biological function through network topology: a survey of the human diseasome
Q40289445	Biological network analysis with CentiScaPe: centralities and experimental dataset integration
Q38062889	Biological network analysis: insights into structure and functions
Q46261267	Biological network border detection.
Q34333565	Biological network motif detection and evaluation
Q30989837	Biological networks and analysis of experimental data in drug discovery
Q38243624	Biological networks and drug discovery--where do we stand?
Q41150803	Biological networks in Parkinson's disease: an insight into the epigenetic mechanisms associated with this disease
Q33394388	Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes
Q29617468	Biological robustness
Q37988201	Biological robustness and the role of microRNAs: a network perspective
Q57341369	Biomimetic Hydrogel-Based Actuating Systems
Q57035312	Biomolecular Assemblies: Moving from Observation to Predictive Design
Q28077880	Biomolecular Network-Based Synergistic Drug Combination Discovery
Q33315463	Biomolecular network querying: a promising approach in systems biology
Q28472546	Biosynthetic potentials of metabolites and their hierarchical organization
Q37384974	Boolean implication networks derived from large scale, whole genome microarray datasets
Q47226889	Boolean network modeling in systems pharmacology
Q44998219	Border control--a membrane-linked interactome of Arabidopsis
Q37846507	Brain Hodotopy: From Esoteric Concept to Practical Surgical Applications
Q24625428	Brain reward circuitry beyond the mesolimbic dopamine system: a neurobiological theory
Q38490536	Breast cancer tissue slices as a model for evaluation of response to rapamycin
Q34602260	Bridging HIV-1 Cellular Latency and Clinical Long-Term Non-Progressor: An Interactomic View
Q39213966	Bridging physiological and evolutionary time-scales in a gene regulatory network
Q37141790	Bridging protein local structures and protein functions
Q28072766	Bridging the gap between clinicians and systems biologists: from network biology to translational biomedical research
Q40168608	Bridging the gap between in silico and cell-based analysis of the nuclear factor-kappaB signaling pathway by in vitro studies of IKK2.
Q30597210	Broad integration of expression maps and co-expression networks compassing novel gene functions in the brain
Q34117004	Buffered Qualitative Stability explains the robustness and evolvability of transcriptional networks.
Q36254297	Building SuperModels: emerging patient avatars for use in precision and systems medicine
Q38028407	Building Synthetic Systems to Learn Nature’s Design Principles
Q39215261	Building and exploring an integrated human kinase network: global organization and medical entry points.
Q50420648	Building protein-protein interaction networks for Leishmania species through protein structural information.
Q37788016	Building the developmental oculome: systems biology in vertebrate eye development and disease
Q38994078	By the company they keep: interaction networks define the binding ability of transcription factors
Q49843823	CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses.
Q58492966	CIGene: a literature-based online resource for cancer initiation genes
Q31159224	CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data
Q37152945	CO2-evoked release of PGE2 modulates sighs and inspiration as demonstrated in brainstem organotypic culture.
Q50095266	CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations
Q36751791	CSGene: a literature-based database for cell senescence genes and its application to identify critical cell aging pathways and associated diseases
Q27004295	Calcium signaling in neocortical development
Q37396107	Can complex cellular processes be governed by simple linear rules?
Q64065675	Cancer Genetic Network Inference Using Gaussian Graphical Models
Q33569864	Cancer Transcriptome Dataset Analysis: Comparing Methods of Pathway and Gene Regulatory Network-Based Cluster Identification
Q34301489	Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level
Q36424477	Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network
Q37199267	Cancer network activity associated with therapeutic response and synergism
Q36327210	Capturing cell-fate decisions from the molecular signatures of a receptor-dependent signaling response
Q60935841	Capturing context-specific regulation in molecular interaction networks
Q41130042	Capturing protein communities by structural proteomics in a thermophilic eukaryote.
Q37423751	Carbene footprinting accurately maps binding sites in protein-ligand and protein-protein interactions
Q34117022	Cardiac mitochondria exhibit dynamic functional clustering
Q33550799	Cardiogenic induction of pluripotent stem cells streamlined through a conserved SDF-1/VEGF/BMP2 integrated network
Q46820368	Catalytic reaction dynamics in inhomogeneous networks
Q21135250	Category theoretic analysis of hierarchical protein materials and social networks
Q64966010	Cationic liposomes induce cytotoxicity in HepG2 via regulation of lipid metabolism based on whole-transcriptome sequencing analysis.
Q52014002	Causal mapping as a tool to mechanistically interpret phenomena in cell motility: application to cortical oscillations in spreading cells
Q36576518	Cellular networks and the aging process
Q36981498	Centenarians as super-controls to assess the biological relevance of genetic risk factors for common age-related diseases: a proof of principle on type 2 diabetes
Q33508585	Centralized modularity of N-linked glycosylation pathways in mammalian cells
Q38851972	Challenges in structural approaches to cell modeling
Q36492692	Changing images of the gene
Q34539656	Chapter 4: Protein Interactions and Disease
Q30378204	Characteristics Analyses and Comparisons of the Protein Structure Networks Constructed by Different Methods.
Q30572266	Characterization of genes for beef marbling based on applying gene coexpression network
Q90450324	Characterization of human proteins with different subcellular localizations by topological and biological properties
Q39108892	Characterization of poplar metabotypes via mass difference enrichment analysis
Q33289133	Characterization of protein-interaction networks in tumors
Q28679280	Characterization of schizophrenia adverse drug interactions through a network approach and drug classification
Q33325591	Characterization of the Shewanella oneidensis Fur gene: roles in iron and acid tolerance response
Q33931010	Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network
Q64934621	Characterizing building blocks of resource constrained biological networks.
Q54964232	Characterizing co-expression networks underpinning maize stalk rot virulence in Fusarium verticillioides through computational subnetwork module analyses.
Q33241989	Characterizing disease states from topological properties of transcriptional regulatory networks
Q34017084	Characterizing genetic interactions in human disease association studies using statistical epistasis networks
Q33540857	Characterizing regulatory path motifs in integrated networks using perturbational data
Q28484558	Characterizing the Network of Drugs and Their Affected Metabolic Subpathways
Q33898089	Characterizing the diversity and biological relevance of the MLPCN assay manifold and screening set.
Q35744439	Charting gene regulatory networks: strategies, challenges and perspectives.
Q28477485	Chemical Basis of Metabolic Network Organization
Q39424754	Chemical genetics and strigolactone perception
Q27675448	Cheminformatics-Driven Discovery of Selective, Nanomolar Inhibitors for Staphylococcal Pyruvate Kinase
Q52846079	Chimera states in networks of Van der Pol oscillators with hierarchical connectivities.
Q36408482	Cholesterol accumulation regulates expression of macrophage proteins implicated in proteolysis and complement activation
Q41194715	Chromatin interaction networks and higher order architectures of eukaryotic genomes
Q42150273	Circuitry and dynamics of human transcription factor regulatory networks
Q36638569	Circular RNA Related to the Chondrocyte ECM Regulates MMP13 Expression by Functioning as a MiR-136 'Sponge' in Human Cartilage Degradation
Q28477267	Classification and analysis of regulatory pathways using graph property, biochemical and physicochemical property, and functional property
Q37266384	Clinical applications of next-generation sequencing in colorectal cancers
Q33476564	Clique-based data mining for related genes in a biomedical database
Q51391176	Closed benchmarks for network community structure characterization
Q61445276	Cluster analysis of replicated alternative polyadenylation data using canonical correlation analysis
Q34438940	Cluster-based assessment of protein-protein interaction confidence
Q31061321	Cluster-based network model for time-course gene expression data
Q34947957	Clustering algorithms for detecting functional modules in protein interaction networks
Q48338906	Clustering and overlapping modules detection in PPI network based on IBFO
Q53095193	Clustering drives assortativity and community structure in ensembles of networks.
Q90629789	Clustering of the structures by using "snakes-&-dragons" approach, or correlation matrix as a signal
Q24792238	Clustering under the line graph transformation: application to reaction network
Q92711824	Co-emergence and Collapse: The Mesoscopic Approach for Conceptualizing and Investigating the Functional Integration of Organisms
Q37087528	Co-evolution and co-adaptation in protein networks
Q30491292	Co-expression among constituents of a motif in the protein-protein interaction network
Q34284046	Co-expression analysis of fetal weight-related genes in ovine skeletal muscle during mid and late fetal development stages
Q51120338	Co-expression and co-localization of hub proteins and their partners are encoded in protein sequence
Q31095417	Co-expression network-based analysis of hippocampal expression data associated with Alzheimer's disease using a novel algorithm
Q47135336	Co-expression networks reveal the tissue-specific regulation of transcription and splicing.
Q35757507	CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra.
Q41877788	CoGNaC: A Chaste Plugin for the Multiscale Simulation of Gene Regulatory Networks Driving the Spatial Dynamics of Tissues and Cancer
Q40353486	Coexpression Network Analysis of miRNA-142 Overexpression in Neuronal Cells
Q39176297	Coexpression characteristics of trehalose-6-phosphate phosphatase subfamily genes reveal different functions in a network context
Q37417304	Coexpression network based on natural variation in human gene expression reveals gene interactions and functions
Q36284528	Coiled-coil networking shapes cell molecular machinery
Q33666920	Collective dynamics of specific gene ensembles crucial for neutrophil differentiation: the existence of genome vehicles revealed
Q33847850	Colored motifs reveal computational building blocks in the C. elegans brain
Q33322945	ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Q41958807	ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
Q34193033	Combinatorial complexity and compositional drift in protein interaction networks.
Q30993330	Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction
Q24810513	Commensurate distances and similar motifs in genetic congruence and protein interaction networks in yeast
Q40529037	Communication between levels of transcriptional control improves robustness and adaptivity.
Q36333988	Community of protein complexes impacts disease association
Q27305647	Community structure analysis of transcriptional networks reveals distinct molecular pathways for early- and late-onset temporal lobe epilepsy with childhood febrile seizures
Q61798706	Comparative Genomic Analyses Reveal Core-Genome-Wide Genes Under Positive Selection and Major Regulatory Hubs in Outlier Strains of Pseudomonas aeruginosa
Q30152621	Comparative Genomic Analysis Reveals Habitat-Specific Genes and Regulatory Hubs within the Genus Novosphingobium
Q37627402	Comparative Study of Elastic Network Model and Protein Contact Network for Protein Complexes: The Hemoglobin Case.
Q34357956	Comparative Transcriptional Profiling and Preliminary Study on Heterosis Mechanism of Super-Hybrid Rice
Q89511545	Comparative Transcriptome Analysis of Different Dendrobium Species Reveals Active Ingredients-Related Genes and Pathways
Q36053748	Comparative analyses of population-scale phenomic data in electronic medical records reveal race-specific disease networks
Q27931057	Comparative analysis of Saccharomyces cerevisiae WW domains and their interacting proteins.
Q42842591	Comparative analysis of differential network modularity in tissue specific normal and cancer protein interaction networks
Q36128732	Comparative analysis of housekeeping and tissue-specific driver nodes in human protein interaction networks
Q28237437	Comparative analysis of microarray normalization procedures: effects on reverse engineering gene networks
Q43537686	Comparative analysis of nuclear estrogen receptor alpha and beta interactomes in breast cancer cells.
Q33528237	Comparative analysis of thermophilic and mesophilic proteins using Protein Energy Networks
Q57016789	Comparative genome-scale metabolic modeling of actinomycetes: The topology of essential core metabolism
Q38845311	Comparative genomic analysis of novel Acinetobacter symbionts: A combined systems biology and genomics approach
Q44845313	Comparative genomics of mammalian hibernators using gene networks.
Q35259355	Comparative genomics of nucleotide metabolism: a tour to the past of the three cellular domains of life.
Q58106975	Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max
Q34325821	Comparative study of RNA-seq- and microarray-derived coexpression networks in Arabidopsis thaliana.
Q51897413	Comparative study of circadian oscillatory network models of Drosophila
Q35596377	Comparative study of the protein profiles of Sunki mandarin and Rangpur lime plants in response to water deficit
Q37683994	Comparative transcriptional profiling of three super-hybrid rice combinations
Q41620998	Comparative transcriptome analysis of the Pacific White Shrimp (Litopenaeus vannamei) muscle reveals the molecular basis of residual feed intake
Q37267317	Comparative transcriptome profiling of longissimus muscle tissues from Qianhua Mutton Merino and Small Tail Han sheep
Q35943528	Comparing Alzheimer's and Parkinson's diseases networks using graph communities structure
Q33927257	Comparing genomes to computer operating systems in terms of the topology and evolution of their regulatory control networks
Q28473443	Comparing transcription rate and mRNA abundance as parameters for biochemical pathway and network analysis
Q34760892	Comparison of Modules of Wild Type and Mutant Huntingtin and TP53 Protein Interaction Networks: Implications in Biological Processes and Functions
Q24307380	Comparison of an expanded ataxia interactome with patient medical records reveals a relationship between macular degeneration and ataxia
Q92562215	Comparison of bacterial community structure and potential functions in hypoxic and non-hypoxic zones of the Changjiang Estuary
Q49663117	Comparison of complex networks and tree-based methods of phylogenetic analysis and proposal of a bootstrap method
Q58106776	Comparison of gene co-networks analysis provide a systems view of rice (Oryza sativa L.) response to Tilletia horrida infection
Q35021687	Comparison of human cell signaling pathway databases--evolution, drawbacks and challenges.
Q35121772	Comparison of protein interaction networks reveals species conservation and divergence
Q100512385	Comparison of soil microbial community between reseeding grassland and natural grassland in Songnen Meadow
Q38882849	Comparison of the general co-expression landscapes between human and mouse
Q33339223	Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal?
Q92875437	Compartment and hub definitions tune metabolic networks for metabolomic interpretations
Q41216115	Compartmentalized metabolic network reconstruction of microbial communities to determine the effect of agricultural intervention on soils.
Q29547868	Complex brain networks: graph theoretical analysis of structural and functional systems
Q37147179	Complex genetics of obesity in mouse models
Q48545697	Complex modular structure of large-scale brain networks
Q27302327	Complex network analysis of CA3 transcriptome reveals pathogenic and compensatory pathways in refractory temporal lobe epilepsy
Q35629402	Complex network analysis of free-energy landscapes
Q42785846	Complexity in biology. Exceeding the limits of reductionism and determinism using complexity theory
Q38103256	Complexity in cancer biology: is systems biology the answer?
Q37274731	Complexity of chronic asthma and chronic obstructive pulmonary disease: implications for risk assessment, and disease progression and control
Q33599456	Composite functional module inference: detecting cooperation between transcriptional regulation and protein interaction by mantel test
Q94552561	Comprehensive analysis of the long non-coding RNA-associated competitive endogenous RNA network reveals novel prognostic biomarkers in Wilms' tumor
Q51249090	Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
Q30391368	Computational Prediction of DrugTarget Interactions Using Chemical, Biological, and Network Features
Q35989733	Computational Reconstruction of NFκB Pathway Interaction Mechanisms during Prostate Cancer
Q42158762	Computational analysis of target hub gene repression regulated by multiple and cooperative miRNAs
Q33531521	Computational approaches for detecting protein complexes from protein interaction networks: a survey
Q35398818	Computational approaches for predicting biomedical research collaborations
Q98302945	Computational causal discovery for post-traumatic stress in police officers
Q37903301	Computational challenges of tumor spheroid modeling
Q40523625	Computational functional genomics based analysis of pain-relevant micro-RNAs.
Q64988383	Computational identification of protein-protein interactions in model plant proteomes.
Q46354935	Computational network analysis of the anatomical and genetic organizations in the mouse brain
Q36682691	Computational prediction of cancer-gene function
Q28484265	Computational prediction of protein-protein interactions in Leishmania predicted proteomes
Q38088344	Computational systems approach for drug target discovery
Q56977996	Computational toxicology: an overview of the sources of data and of modelling methods
Q24811754	Computational, integrative, and comparative methods for the elucidation of genetic coexpression networks
Q41947966	Computer-assisted design for scaling up systems based on DNA reaction networks
Q33467564	Computing paths and cycles in biological interaction graphs
Q47561894	Computing the Extended Synthesis: Mapping the Dynamics and Conceptual Structure of the Evolvability Research Front
Q35186546	Computing with bacterial constituents, cells and populations: from bioputing to bactoputing
Q91641856	Concepts in Boolean network modeling: What do they all mean?
Q50100354	Conceptual Challenges in the Theoretical Foundations of Systems Biology.
Q39147941	Conceptual Foundations of Systems Biology Explaining Complex Cardiac Diseases
Q34017266	Conceptual frameworks and mouse models for studying sex differences in physiology and disease: why compensation changes the game
Q36111351	Concordance of copy number loss and down-regulation of tumor suppressor genes: a pan-cancer study
Q35221720	Concurrent conditional clustering of multiple networks: COCONETS
Q33755473	Confidence from uncertainty--a multi-target drug screening method from robust control theory
Q64102647	Connect and Conquer: Collectivized Behavior of Mitochondria and Bacteria
Q33318135	Connecting genes, coexpression modules, and molecular signatures to environmental stress phenotypes in plants
Q38850829	Connecting myelin-related and synaptic dysfunction in schizophrenia with SNP-rich gene expression hubs
Q38133295	Connecting the dots: applications of network medicine in pharmacology and disease
Q64359300	Connectivity and complex systems: learning from a multi-disciplinary perspective
Q31127645	Connectivity can be used to identify key genes in DNA microarray data: a study based on gene expression in nasal polyps before and after treatment with glucocorticoids.
Q38651544	Connectivity in gene coexpression networks negatively correlates with rates of molecular evolution in flowering plants.
Q35215128	Conservation and evolution of gene coexpression networks in human and chimpanzee brains
Q36787023	Conservation and topology of protein interaction networks under duplication-divergence evolution
Q41994185	Conservation of high-flux backbone in alternate optimal and near-optimal flux distributions of metabolic networks
Q61813251	Conserved Disease Modules Extracted From Multilayer Heterogeneous Disease and Gene Networks for Understanding Disease Mechanisms and Predicting Disease Treatments
Q34425196	Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules
Q33300172	Consistency analysis of metabolic correlation networks
Q46472167	Consistent scaling of population structure across landscapes despite intraspecific variation in movement and connectivity
Q21184164	Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome
Q24594789	Constraints and plasticity in genome and molecular-phenome evolution
Q37657960	Constructing Networks of Organelle Functional Modules in Arabidopsis
Q47263458	Constructing a comprehensive gene co-expression based interactome in Bos taurus
Q35167229	Constructing a fish metabolic network model
Q33359001	Constructing disease-specific gene networks using pair-wise relevance metric: application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements
Q27496517	Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
Q36320724	Constructing the angiome: a global angiogenesis protein interaction network
Q91584208	Construction and Analysis of Molecular Association Network by Combining Behavior Representation and Node Attributes
Q64068068	Construction and Analysis of Protein-Protein Interaction Network of Heroin Use Disorder
Q92570290	Construction and Comprehensive Analysis of a Molecular Association Network via lncRNA-miRNA -Disease-Drug-Protein Graph
Q38646016	Construction and Optimization of a Large Gene Coexpression Network in Maize Using RNA-Seq Data.
Q34712823	Construction and analyses of human large-scale tissue specific networks
Q34085568	Construction and analysis of an integrated regulatory network derived from high-throughput sequencing data
Q30996406	Construction and analysis of correlation networks based on gas chromatography-mass spectrometry metabonomics data for lipopolysaccharide-induced inflammation and intervention with volatile oil from Angelica sinensis in rats
Q24632014	Construction and analysis of protein-protein interaction networks
Q35234940	Construction and analysis of the protein-protein interaction networks based on gene expression profiles of Parkinson's disease
Q37428842	Construction and application of a protein interaction map for white spot syndrome virus (WSSV).
Q39146441	Construction of Functional Gene Networks Using Phylogenetic Profiles
Q38909947	Construction of a Comprehensive Protein-Protein Interaction Map for Vitiligo Disease to Identify Key Regulatory Elements: A Systemic Approach
Q33347888	Construction of a cancer-perturbed protein-protein interaction network for discovery of apoptosis drug targets
Q50620086	Construction of a chloroplast protein interaction network and functional mining of photosynthetic proteins in Arabidopsis thaliana
Q30431970	Construction of a large extracellular protein interaction network and its resolution by spatiotemporal expression profiling
Q91790671	Context-Specific Coordinately Regulatory Network Prioritize Breast Cancer Genetic Risk Factors
Q39181972	Contextual Hub Analysis Tool (CHAT): A Cytoscape app for identifying contextually relevant hubs in biological networks
Q45156844	Continuous-time random walks on networks with vertex- and time-dependent forcing.
Q38196339	Contributions from emerging transcriptomics technologies and computational strategies for drug discovery.
Q36806304	Control of complex networks requires both structure and dynamics.
Q58694167	Control of seminal fluid protein expression via regulatory hubs in
Q39768927	Controlled recovery of phylogenetic communities from an evolutionary model using a network approach
Q41605713	Controlling Directed Protein Interaction Networks in Cancer
Q41669419	Controlling networks of nonlinearly-coupled nodes using response surfaces
Q48258606	Controlling the Catalytic Functions of DNAzymes within Constitutional Dynamic Networks of DNA Nanostructures
Q33441756	Core and periphery structures in protein interaction networks
Q92778560	Core transcriptional regulatory circuits in prion diseases
Q33294771	Correlation between structure and temperature in prokaryotic metabolic networks
Q34098195	Correlation network analysis applied to complex biofilm communities
Q42024809	Correlation network analysis reveals relationships between diet-induced changes in human gut microbiota and metabolic health
Q34988632	Correlations between community structure and link formation in complex networks
Q64109873	Cortical-like mini-columns of neuronal cells on zinc oxide nanowire surfaces
Q37090487	Counting motifs in the human interactome.
Q28727977	Creating and analyzing pathway and protein interaction compendia for modelling signal transduction networks
Q27320212	Cross Tissue Trait-Pathway Network Reveals the Importance of Oxidative Stress and Inflammation Pathways in Obesity-Induced Diabetes in Mouse
Q37195490	Cross talk between miR-214 and PTEN attenuates glomerular hypertrophy under diabetic conditions
Q39768567	Cross-Disciplinary Network Comparison: Matchmaking Between Hairballs
Q24805048	Cross-species comparison of genome-wide expression patterns
Q64233358	Crosstalk analysis of dysregulated pathways in preeclampsia
Q34194215	Crosstalk between transcription factors and microRNAs in human protein interaction network
Q28481300	Crowd sourcing a new paradigm for interactome driven drug target identification in Mycobacterium tuberculosis
Q56399692	Current and Future Challenges for Collaborative Computational Technologies for the Life Sciences
Q38222613	Current understanding of the formation and adaptation of metabolic systems based on network theory
Q40102014	Cutaneous transcriptome analysis in NIH hairless mice.
Q36019357	Cytogenetics and gene discovery in psychiatric disorders.
Q36329373	DIGNiFI: Discovering causative genes for orphan diseases using protein-protein interaction networks
Q42043730	DISCOVERY OF MOLECULARLY TARGETED THERAPIES
Q92218015	DISPOT: a simple knowledge-based protein domain interaction statistical potential
Q35892040	DNA-microarray analysis of brain cancer: molecular classification for therapy
Q27315964	DRUM: a new framework for metabolic modeling under non-balanced growth. Application to the carbon metabolism of unicellular microalgae
Q34383264	DTome: a web-based tool for drug-target interactome construction
Q90681480	Data Integration in Poplar: 'Omics Layers and Integration Strategies
Q30981900	Data integration: challenges for drug discovery
Q31068983	Data- and knowledge-based modeling of gene regulatory networks: an update
Q58602493	De novo transcriptome assembly of the bamboo snout beetle reveals ability to degrade lignocellulose of bamboo feedstock
Q57942356	Decentralization and heterogeneity in complex adaptive systems
Q30492401	Deciding fate in adverse times: sporulation and competence in Bacillus subtilis
Q28548411	Deciphering Signaling Pathway Networks to Understand the Molecular Mechanisms of Metformin Action
Q21135241	Deciphering network community structure by surprise
Q37918500	Deciphering the regulatory codes in bacterial genomes
Q33984073	Decoding complex biological networks - tracing essential and modulatory parameters in complex and simplified models of the cell cycle
Q33348854	Deducing topology of protein-protein interaction networks from experimentally measured sub-networks
Q38460655	Deep Sequencing of the Medicago truncatula Root Transcriptome Reveals a Massive and Early Interaction between Nodulation Factor and Ethylene Signals
Q33766969	Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes
Q55342977	Degree dependence in rates of transcription factor evolution explains the unusual structure of transcription networks.
Q39475720	Delineation of key regulatory elements identifies points of vulnerability in the mitogen-activated signaling network
Q33604721	Depression Disorder Classification of fMRI Data Using Sparse Low-Rank Functional Brain Network and Graph-Based Features
Q33938543	Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data.
Q41994556	Design principles for robust oscillatory behavior
Q99408279	Designing and interpreting 'multi-omic' experiments that may change our understanding of biology
Q33918013	Detecting communities based on network topology
Q48439461	Detecting functional modules in the yeast protein-protein interaction network
Q89472544	Detecting intermittent switching leadership in coupled dynamical systems
Q40529691	Detecting modules in biological networks by edge weight clustering and entropy significance
Q30500104	Detecting network communities: an application to phylogenetic analysis
Q24632511	Detecting network modules in fMRI time series: a weighted network analysis approach
Q47221831	Detecting the Significant Flux Backbone of Escherichia coli metabolism
Q34981514	Detection for pathway effect contributing to disease in systems epidemiology with a case-control design.
Q25255700	Detection of compound mode of action by computational integration of whole-genome measurements and genetic perturbations
Q33840761	Detection of type 2 diabetes related modules and genes based on epigenetic networks
Q35596054	Determining minimum set of driver nodes in protein-protein interaction networks
Q33692282	Determining modular organization of protein interaction networks by maximizing modularity density
Q28706243	Developing predictive molecular maps of human disease through community-based modeling
Q90535649	Development and validation of a 14-gene signature for prognosis prediction in hepatocellular carcinoma
Q64911717	Development and validation of a new tumor-based gene signature predicting prognosis of HBV/HCV-included resected hepatocellular carcinoma patients.
Q41350075	Development of structural correlations and synchronization from adaptive rewiring in networks of Kuramoto oscillators
Q37253203	Developmental emergence of power-law wake behavior depends upon the functional integrity of the locus coeruleus.
Q35093523	DiME: a scalable disease module identification algorithm with application to glioma progression
Q21284094	Difference in gene duplicability may explain the difference in overall structure of protein-protein interaction networks among eukaryotes
Q33942363	Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement
Q37696080	Differences in reproductive toxicology between alopecia drugs: an analysis on adverse events among female and male cases
Q53265115	Differences in transcriptional effects of 1α,25 dihydroxyvitamin D3 on fibroblasts associated to breast carcinomas and from paired normal breast tissues
Q36677331	Differential Masking of Natural Genetic Variation by miR-9a in Drosophila
Q35802316	Differential analysis of biological networks
Q35177849	Differential coexpression analysis of obesity-associated networks in human subcutaneous adipose tissue.
Q37097107	Differential dependency network analysis to identify condition-specific topological changes in biological networks
Q33321260	Differential dynamic properties of scleroderma fibroblasts in response to perturbation of environmental stimuli
Q33588138	Differential enrichment of regulatory motifs in the composite network of protein-protein and gene regulatory interactions
Q51872580	Differential equations as a tool for community identification
Q33241064	Differential evolutionary conservation of motif modes in the yeast protein interaction network
Q42778083	Differential gene regulatory networks in development and disease
Q36393280	Differential network entropy reveals cancer system hallmarks.
Q33359813	Differential transcriptome analysis between Populus and its synthesized allotriploids driven by second-division restitution
Q36208545	Differential variation patterns between hubs and bottlenecks in human protein-protein interaction networks
Q37500904	Differentially Coexpressed Disease Gene Identification Based on Gene Coexpression Network
Q33689423	Diffusion model based spectral clustering for protein-protein interaction networks
Q41718465	Digging into the low molecular weight peptidome with the OligoNet web server
Q35647249	Direct estimation of differential networks
Q90264380	Directed Networks as a Novel Way to Describe and Analyze Cardiac Excitation: Directed Graph Mapping
Q30990568	Discover protein complexes in protein-protein interaction networks using parametric local modularity
Q47561443	Discovering Altered Regulation and Signaling Through Network-based Integration of Transcriptomic, Epigenomic, and Proteomic Tumor Data.
Q33504922	Discovering cancer genes by integrating network and functional properties
Q36634358	Discovering communities in complex networks by edge label propagation
Q47884228	Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.
Q41518046	Discovering the hidden sub-network component in a ranked list of genes or proteins derived from genomic experiments
Q35570011	Discovery of core biotic stress responsive genes in Arabidopsis by weighted gene co-expression network analysis
Q34171039	Discovery of intramolecular signal transduction network based on a new protein dynamics model of energy dissipation
Q89022268	Discovery of two-level modular organization from matched genomic data via joint matrix tri-factorization
Q43246373	Discrete dynamic modeling of cellular signaling networks.
Q33668279	Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction
Q33979622	Disease biology in the coming decade(s)
Q84717320	Disease embryo development network reveals the relationship between disease genes and embryo development genes
Q58107316	Disease networks identify specific conditions and pleiotropy influencing multimorbidity in the general population
Q33506605	Disease-aging network reveals significant roles of aging genes in connecting genetic diseases
Q33411566	Disease-associated pathophysiologic structures in pediatric rheumatic diseases show characteristics of scale-free networks seen in physiologic systems: implications for pathogenesis and treatment
Q36380503	Disease-related gene module detection based on a multi-label propagation clustering algorithm.
Q35871930	Disentangling the multigenic and pleiotropic nature of molecular function
Q34602700	Dispensability of Escherichia coli ’s latent pathways
Q24306904	Disrupted in Schizophrenia 1 Interactome: evidence for the close connectivity of risk genes and a potential synaptic basis for schizophrenia
Q27686946	Dissecting phosphorylation networks: lessons learned from yeast
Q34552423	Dissecting the human protein-protein interaction network via phylogenetic decomposition
Q34730277	Dissection of Protein Interactomics Highlights MicroRNA Synergy
Q43923351	Dissection of evolutionary networks to assess their role in the evolution of robustness, function, and diversification
Q43906222	Dissection of human MiRNA regulatory influence to subpathway
Q34988888	Dissection of miRNA-miRNA interaction in esophageal squamous cell carcinoma
Q35545579	Dissection of the cis-2-decenoic acid signaling network in Pseudomonas aeruginosa using microarray technique
Q34406374	Distinct and Competitive Regulatory Patterns of Tumor Suppressor Genes and Oncogenes in Ovarian Cancer
Q55661395	Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize.
Q64123259	Distinct transcriptional modules in the peripheral blood mononuclear cells response to human respiratory syncytial virus or to human rhinovirus in hospitalized infants with bronchiolitis
Q58589840	Distributed Bayesian networks reconstruction on the whole genome scale
Q36156632	Distribution of node characteristics in complex networks
Q28754659	Distribution patterns of small-molecule ligands in the protein universe and implications for origin of life and drug discovery
Q47116056	Diurnal Transcriptome and Gene Network Represented through Sparse Modeling in Brachypodium distachyon.
Q46148473	Divergence pattern of duplicate genes in protein-protein interactions follows the power law.
Q34283804	Diverse epigenetic strategies interact to control epidermal differentiation
Q35034277	Do cancer proteins really interact strongly in the human protein-protein interaction network?
Q35088059	Do the rich get richer? An empirical analysis of the Bitcoin transaction network
Q34168801	DoGeNetS: using optimisation to discriminate regulatory network topologies based on gene expression data
Q34674915	Does Habitat Variability Really Promote Metabolic Network Modularity?
Q42532157	Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network
Q30010117	Domain-mediated protein interaction prediction: From genome to network
Q40539036	Downward causation by information control in micro-organisms
Q57128184	Drawing on disorder: How viruses use histone mimicry to their advantage
Q26748728	Drug Repurposing Is a New Opportunity for Developing Drugs against Neuropsychiatric Disorders
Q37774003	Drug discovery and design for complex diseases through QSAR computational methods.
Q28276831	Drug discovery: playing dirty
Q33589478	Drug repurposing: a better approach for infectious disease drug discovery?
Q28485990	Drug target prediction and repositioning using an integrated network-based approach
Q46424664	Drug target prioritization in Plasmodium falciparum through metabolic network analysis, and inhibitor designing using virtual screening and docking approach
Q39554596	Drug-Target Networks
Q29614447	Drug-target network
Q86513793	Drug-target networks for Tanshinone IIA identified by data mining
Q33361084	Drug-therapy networks and the prediction of novel drug targets
Q52331600	Dual targeting of the cancer antioxidant network with 1,4-naphthoquinone fused Gold(i) N-heterocyclic carbene complexes.
Q36228459	Duplicate gene enrichment and expression pattern diversification in multicellularity
Q91747714	Dynamic Gene Network Analysis of Caco-2 Cell Response to Shiga Toxin-Producing Escherichia coli-Associated Hemolytic-Uremic Syndrome
Q41812683	Dynamic Modeling of Genes Controlling Cancer Stem Cell Proliferation
Q30815482	Dynamic changes in subgraph preference profiles of crucial transcription factors
Q24337833	Dynamic circadian protein-protein interaction networks predict temporal organization of cellular functions
Q92701409	Dynamic edge-based biomarker non-invasively predicts hepatocellular carcinoma with hepatitis B virus infection for individual patients based on blood testing
Q35549872	Dynamic epistasis under varying environmental perturbations
Q38752455	Dynamic gene expression analysis in a H1N1 influenza virus mouse pneumonia model
Q34053914	Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection.
Q39979587	Dynamic modular architecture of protein-protein interaction networks beyond the dichotomy of ‘date’ and ‘party’ hubs
Q34934057	Dynamic modularity in protein interaction networks predicts breast cancer outcome
Q45281809	Dynamic network topology changes in functional modules predict responses to oxidative stress in yeast
Q38479587	Dynamic networks reveal key players in aging
Q24810462	Dynamic properties of network motifs contribute to biological network organization
Q38171432	Dynamic protein interaction network construction and applications
Q36203332	Dynamic tracking of functional gene modules in treated juvenile idiopathic arthritis
Q34672166	Dynamic transcription factor networks in epithelial-mesenchymal transition in breast cancer models
Q55120408	Dynamic transcriptome profiling towards understanding the morphogenesis and development of diverse feather in domestic duck.
Q39069273	Dynamic versus static biomarkers in cancer immune checkpoint blockade: unravelling complexity.
Q51949944	Dynamical advantages of scale-free networks
Q41944858	Dynamical robustness in complex networks: the crucial role of low-degree nodes
Q34631698	Dynamics and Structure in Cell Signaling Networks: Off-State Stability and Dynamically Positive Cycles
Q96303730	Dynamics of Gene Co-expression Networks in Time-Series Data: A Case Study in Drosophila melanogaster Embryogenesis
Q27349788	Dynamics of information access on the web
Q38481105	Dynamics of regulatory networks in gastrin-treated adenocarcinoma cells
Q34441582	Dynamics of regulatory networks in the developing mouse retina.
Q35105643	Dynamics of social network structure for Alzheimer and Lymphoma scientific communities
Q28645821	Dynamics of the discovery process of protein-protein interactions from low content studies
Q95277120	Dysregulation of Signaling Pathways Due to Differentially Expressed Genes From the B-Cell Transcriptomes of Systemic Lupus Erythematosus Patients - A Bioinformatics Approach
Q37344028	ECGene: A Literature-Based Knowledgebase of Endometrial Cancer Genes
Q56784204	EPIDEMIC SPREADING AND GLOBAL STABILITY OF A NEW SIS MODEL WITH DELAY ON HETEROGENEOUS NETWORKS
Q38009309	ER-Mitochondria Crosstalk during Cerebral Ischemia: Molecular Chaperones and ER-Mitochondrial Calcium Transfer
Q43047331	Early Transcriptional Divergence Marks Virus-Specific Primary Human CD8+ T Cells in Chronic versus Acute Infection
Q41918684	Ecogenomics of virophages and their giant virus hosts assessed through time series metagenomics
Q46267301	Ecological Patterns Among Bacteria and Microbial Eukaryotes Derived from Network Analyses in a Low-Salinity Lake
Q90428153	Ecological networks reveal contrasting patterns of bacterial and fungal communities in glacier-fed streams in Central Asia
Q28751218	Edge direction and the structure of networks
Q38167225	Edgotype: a fundamental link between genotype and phenotype
Q56788388	Editorial
Q86109314	Effect of Alternative Splicing on the Degree Centrality of Nodes in Protein–Protein Interaction Networks of Homo sapiens
Q51058976	Effect of corticision on orthodontic tooth movement in a rat model as assessed by RNA sequencing
Q39015257	Effect of database drift on network topology and enrichment analyses: a case study for RegulonDB.
Q33257910	Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli
Q36120051	Effect of reference genome selection on the performance of computational methods for genome-wide protein-protein interaction prediction
Q58067825	Effect of sampling on topology predictions of protein-protein interaction networks
Q91808988	Effects of icariin on long noncoding RNA and mRNA expression profile in the aortas of apoE-deficient mice
Q59611952	Effects of local network topology on the functional reconstruction of spiking neural network models
Q47328166	Effects of threshold on the topology of gene co-expression networks
Q36123992	Efficacy-oriented compatibility for component-based Chinese medicine
Q39277525	Efficiency of complex production in changing environment
Q38268218	Efficiency of the immunome protein interaction network increases during evolution
Q28547543	Efficient Characterization of Parametric Uncertainty of Complex (Bio)chemical Networks
Q36240474	Efficient Switches in Biology and Computer Science
Q33549681	Efficient estimation of the robustness region of biological models with oscillatory behavior
Q90464035	Efficient identification of multiple pathways: RNA-Seq analysis of livers from 56Fe ion irradiated mice
Q33852639	Elementary signaling modes predict the essentiality of signal transduction network components
Q49885337	Elucidating the gene regulatory networks modulating cancer stem cells and non-stem cancer cells in high grade serous ovarian cancer.
Q37125958	Elucidating the role of gonadal hormones in sexually dimorphic gene coexpression networks
Q33515424	Elucidation of functional consequences of signalling pathway interactions.
Q36278388	Elucidation of molecular kinetic schemes from macroscopic traces using system identification.
Q36217253	Embracing complexity, inching closer to reality
Q90115123	Emergence of Hierarchical Modularity in Evolving Networks Uncovered by Phylogenomic Analysis
Q38097768	Emergence of a novel calcium signaling pathway in plants: CBL-CIPK signaling network
Q51025230	Emergence of clustering: role of inhibition
Q39272137	Emergence of disassortative mixing from pruning nodes in growing scale-free networks
Q50528571	Emergence of heterogeneous structures in chemical reaction-diffusion networks
Q33419857	Emergent genome-wide control in wildtype and genetically mutated lipopolysaccarides-stimulated macrophages
Q58122640	Emerging Biomarkers in Bladder Cancer Identified by Network Analysis of Transcriptomic Data
Q33633097	Emerging Roles of circRNA Related to the Mechanical Stress in Human Cartilage Degradation of Osteoarthritis
Q34782638	Emerging hemodynamic signatures of the right heart (Third International Right Heart Failure Summit, part 2).
Q91260544	Emerging intersections between neuroscience and glioma biology
Q41850318	Emerging technologies for the genomic analysis of cancer
Q51091499	Empirical comparison of tests for differential expression on time-series microarray experiments
Q33303443	Empirical multiscale networks of cellular regulation
Q62743772	Enabling Precision Cardiology Through Multiscale Biology and Systems Medicine
Q25256615	EndoNet: an information resource about endocrine networks.
Q91924502	Endocrine regulation of regeneration: Linking global signals to local processes
Q37980726	Endocytosis and signaling: cell logistics shape the eukaryotic cell plan
Q38084923	Engineered genetic information processing circuits
Q36332252	Engineering microbial phenotypes through rewiring of genetic networks
Q30000294	Enhancing gene regulatory network inference through data integration with markov random fields
Q64293656	Enhancing gene set enrichment using networks
Q51575725	Enhancing neural-network performance via assortativity
Q34099722	Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores
Q35294548	Enhancing the functional content of eukaryotic protein interaction networks
Q84919764	Enriched partial correlations in genome-wide gene expression profiles of hybrids (A. thaliana): a systems biological approach towards the molecular basis of heterosis
Q36769410	Ensuring the statistical soundness of competitive gene set approaches: gene filtering and genome-scale coverage are essential
Q37083500	Environmental and genetic perturbations reveal different networks of metabolic regulation
Q97905194	Environmental heterogeneity determines the ecological processes that govern bacterial metacommunity assembly in a floodplain river system
Q30415888	Epigenetic coordination of signaling pathways during the epithelial-mesenchymal transition
Q33877466	Epistatic Networks Jointly Influence Phenotypes Related to Metabolic Disease and Gene Expression in Diversity Outbred Mice.
Q36903537	Epithelial organisation revealed by a network of cellular contacts
Q24675055	Epstein-Barr virus and virus human protein interaction maps
Q38631876	Equine skeletal muscle adaptations to exercise and training: evidence of differential regulation of autophagosomal and mitochondrial components
Q39343644	Essential gene identification and drug target prioritization in Leishmania species
Q33747201	Establishment of the model system between phytochemicals and gene expression profiles in Macrosclereid cells of Medicago truncatula.
Q64106678	Estimation of swine movement network at farm level in the US from the Census of Agriculture data
Q33300475	Estimation of the number of extreme pathways for metabolic networks
Q38667869	Estrogen-Initiated Protein Interactomes During Embryo Implantation
Q36409543	Evaluation and improvement of the regulatory inference for large co-expression networks with limited sample size
Q33989498	Evaluation of genome-wide expression profiles of blood and sputum neutrophils in cystic fibrosis patients before and after antibiotic therapy
Q38367823	Evidence for Network Evolution in an Arabidopsis Interactome Map
Q33288468	Evidence for systems-level molecular mechanisms of tumorigenesis
Q41865264	Evidence of highly regulated genes (in-Hubs) in gene networks of Saccharomyces cerevisiae
Q36372845	Evidence of perturbations of the cytokine network in preterm labor
Q33317634	Evidence of probabilistic behaviour in protein interaction networks
Q37620156	Evolution of biomolecular networks: lessons from metabolic and protein interactions
Q33889106	Evolution of competitive ability: an adaptation speed vs. accuracy tradeoff rooted in gene network size
Q28757885	Evolution of evolvability in gene regulatory networks
Q37291083	Evolution of hormone signaling in elasmobranchs by exploitation of promiscuous receptors
Q33575600	Evolution of metabolic network organization
Q64253738	Evolution of resilience in protein interactomes across the tree of life
Q35224604	Evolution of the Max and Mlx Networks in Animals
Q33269402	Evolution, interactions, and biological networks
Q35606898	Evolutionarily conserved network properties of intrinsically disordered proteins
Q33377041	Evolutionarily conserved transcriptional co-expression guiding embryonic stem cell differentiation
Q36480634	Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm
Q61811919	Evolutionary Potential of Cis-Regulatory Mutations to Cause Rapid Changes in Transcription Factor Binding
Q38028398	Evolutionary Systems Biology: Historical and Philosophical Perspectives on an Emerging Synthesis
Q36064678	Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks
Q64059802	Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions
Q24792821	Evolutionary cores of domain co-occurrence networks
Q30484429	Evolutionary origins of human apoptosis and genome-stability gene networks
Q28743510	Evolutionary plasticity determination by orthologous groups distribution
Q31042645	Evolutionary potential of a duplicated repressor-operator pair: simulating pathways using mutation data
Q37208711	Evolutionary rates and centrality in the yeast gene regulatory network
Q57935386	Evolutionary tinkering vs. rational engineering in the times of synthetic biology
Q36327195	Evolvable signaling networks of receptor tyrosine kinases: relevance of robustness to malignancy and to cancer therapy
Q58700454	Evolving Model for the Complex Traffic and Transportation Network Considering Self-Growth Situation
Q57169050	Evolving systems biology approaches to understanding non-coding RNAs in pulmonary hypertension
Q34608239	Evolving toward a human-cell based and multiscale approach to drug discovery for CNS disorders
Q51456158	Exact on-lattice stochastic reaction-diffusion simulations using partial-propensity methods
Q38955563	Examining the architecture of cellular computing through a comparative study with a computer.
Q34020695	Expectations, validity, and reality in gene expression profiling
Q27936433	Experimental Evidence for a Revision in the Annotation of Putative Pyridoxamine 5'-Phosphate Oxidases P(N/M)P from Fungi
Q35748105	Experimental and computational studies of fatty acid distribution networks.
Q28691691	Experimental evolution of protein–protein interaction networks
Q44788748	Experiments on autonomous Boolean networks
Q28750822	Explaining human uniqueness: genome interactions with environment, behaviour and culture
Q60908644	Exploiting locational and topological overlap model to identify modules in protein interaction networks
Q55649364	Exploration of potential roles of a new LOXL2 splicing variant using network knowledge in esophageal squamous cell carcinoma.
Q91697612	Exploration of prognosis-related microRNA and transcription factor co-regulatory networks across cancer types
Q52653142	Exploration of the Anti-Inflammatory Drug Space Through Network Pharmacology: Applications for Drug Repurposing
Q44802653	Exploration of the Topology of Chemical Spaces with Network Measures
Q46370953	Exploring Amyloidogenicity of Clusterin: A Structural and Bioinformatics Analysis.
Q34391317	Exploring Overlapping Functional Units with Various Structure in Protein Interaction Networks
Q42648384	Exploring biotic interactions within protist cell populations using network methods
Q30583531	Exploring community structure in biological networks with random graphs
Q35051482	Exploring drug-target interaction networks of illicit drugs
Q35196507	Exploring function prediction in protein interaction networks via clustering methods
Q33766689	Exploring hierarchical and overlapping modular structure in the yeast protein interaction network
Q89210163	Exploring mechanisms of Panax notoginseng saponins in treating coronary heart disease by integrating gene interaction network and functional enrichment analysis
Q55496631	Exploring novel key regulators in breast cancer network.
Q30356608	Exploring the "dark matter" of a mammalian proteome by protein structure and function modeling.
Q41220497	Exploring the binding diversity of intrinsically disordered proteins involved in one-to-many binding
Q41105949	Exploring the cross talk between ER stress and inflammation in age-related macular degeneration.
Q34305958	Exploring the human diseasome: the human disease network
Q37439086	Exploring the molecular basis of age-related disease comorbidities using a multi-omics graphical model
Q30458875	Exploring the pathogenetic association between schizophrenia and type 2 diabetes mellitus diseases based on pathway analysis
Q38498511	Exploring tomato gene functions based on coexpression modules using graph clustering and differential coexpression approaches
Q39244883	Express path analysis identifies a tyrosine kinase Src-centric network regulating divergent host responses to Mycobacterium tuberculosis infection
Q33778435	Expression QTL modules as functional components underlying higher-order phenotypes
Q38724314	Expression atlas and comparative coexpression network analyses reveal important genes involved in the formation of lignified cell wall in Brachypodium distachyon
Q37269411	Expression of epithelial-mesenchymal transition-related genes increases with copy number in multiple cancer types.
Q33761788	Expression pattern of genome-scale long noncoding RNA following acute myocardial infarction in Chinese Uyghur patients
Q33857692	Expression profiles and initial confirmation of long noncoding RNAs in Chinese patients with pulmonary adenocarcinoma
Q92623615	Expression profiles and potential functions of long non-coding RNA in stable angina pectoris patients from Uyghur population of China
Q58798150	Extended-spectrum β-lactamase-encoding genes are spreading on a wide range of Escherichia coli plasmids existing prior to the use of third-generation cephalosporins
Q35035607	Extension of life span by impaired glucose metabolism in Caenorhabditis elegans is accompanied by structural rearrangements of the transcriptomic network
Q51325377	Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli
Q96952475	Extensive signal integration by the phytohormone protein network
Q33327570	Extracting expression modules from perturbational gene expression compendia
Q33251020	Extracting gene networks for low-dose radiation using graph theoretical algorithms
Q33648558	Extracting the abstraction pyramid from complex networks
Q101157747	Extraction and Integration of Genetic Networks from Short-Profile Omic Data Sets
Q28754563	Extraction of semantic biomedical relations from text using conditional random fields
Q55010158	FACS-Seq analysis of Pax3-derived cells identifies non-myogenic lineages in the embryonic forelimb.
Q34247839	FUSE: a profit maximization approach for functional summarization of biological networks
Q30403407	Failure tolerance of motif structure in biological networks
Q37954605	Far from Equilibrium Percolation, Stochastic and Shape Resonances in the Physics of Life
Q39444876	Fast Inference for the Latent Space Network Model Using a Case-Control Approximate Likelihood
Q33898898	Fast network centrality analysis using GPUs
Q35922389	FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks
Q33774716	Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae
Q51319648	Features and heterogeneities in growing network models.
Q37831109	Feedback regulation of EGFR signalling: decision making by early and delayed loops.
Q51788758	Feedback topology and XOR-dynamics in Boolean networks with varying input structure
Q43138940	Finding common protein interaction patterns across organisms.
Q100737090	Finding disease modules for cancer and COVID-19 in gene co-expression networks with the Core&Peel method
Q36410897	First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes
Q33575800	Fisher's geometrical model emerges as a property of complex integrated phenotypic networks
Q33325589	Flexible nets: disorder and induced fit in the associations of p53 and 14-3-3 with their partners
Q37200187	Fluoxetine Treatment Rescues Energy Metabolism Pathway Alterations in a Posttraumatic Stress Disorder Mouse Model
Q79798782	Flux balance analysis of barley seeds: a computational approach to study systemic properties of central metabolism
Q47878737	Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks.
Q42936997	Forging new ties between E. coli genes
Q33790320	Formal Modeling of mTOR Associated Biological Regulatory Network Reveals Novel Therapeutic Strategy for the Treatment of Cancer
Q37305086	Formal modeling and analysis of the hexosamine biosynthetic pathway: role of O-linked N-acetylglucosamine transferase in oncogenesis and cancer progression
Q42030401	Formulating genome-scale kinetic models in the post-genome era.
Q36593124	Fostering synergy between cell biology and systems biology.
Q58908979	Fractal Structure Favoring Superconductivity at High Temperatures in a Stack of Membranes Near a Strain Quantum Critical Point
Q42557767	Fractal topology of gene promoter networks at phase transitions
Q34333419	Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network
Q34984397	Free-energy distribution of binary protein-protein binding suggests cross-species interactome differences
Q57271905	From Complex Networks to Intelligent Systems
Q28650347	From Physics to Pharmacology?
Q48709849	From Science II to Vaccinology II: A new epistemology
Q35839889	From System-Wide Differential Gene Expression to Perturbed Regulatory Factors: A Combinatorial Approach
Q31121019	From correlation to causation networks: a simple approximate learning algorithm and its application to high-dimensional plant gene expression data
Q34219291	From dusk till dawn: the Arabidopsis thaliana sugar starving responsive network
Q42035208	From evidence to inference: probing the evolution of protein interaction networks
Q37055960	From individual Wnt pathways towards a Wnt signalling network.
Q41905650	From isolated to networked: a paradigmatic shift in mitochondrial physiology
Q26830811	From modules to medicine: How modular domains and their associated networks can enable personalized medicine
Q41142895	From mouse genetics to systems biology
Q34274790	From networks of protein interactions to networks of functional dependencies
Q38008992	From protein interaction networks to novel therapeutic strategies
Q36069217	From protein networks to biological systems
Q37941447	From simple graphs to the connectome: Networks in neuroimaging
Q64072607	From single drug targets to synergistic network pharmacology in ischemic stroke
Q33223219	From single genes to co-expression networks: extracting knowledge from barley functional genomics.
Q38057686	From specific to global analysis of posttranscriptional regulation in eukaryotes: posttranscriptional regulatory networks
Q64985849	From systems to biology: A computational analysis of the research articles on systems biology from 1992 to 2013.
Q39992601	FunMod: a Cytoscape plugin for identifying functional modules in undirected protein-protein networks
Q58066491	FunNet: an integrative tool for exploring transcriptional interactions
Q56889474	Function, dynamics and evolution of network motif modules in integrated gene regulatory networks of worm and plant
Q35964445	Functional Analysis and Characterization of Differential Coexpression Networks
Q52531977	Functional Analysis of OMICs Data and Small Molecule Compounds in an Integrated "Knowledge-Based" Platform
Q34060848	Functional Genomics Assistant (FUGA): a toolbox for the analysis of complex biological networks
Q39307570	Functional Implications of Cardiac Mitochondria Clustering.
Q30496004	Functional analysis of multiple genomic signatures demonstrates that classification algorithms choose phenotype-related genes
Q42582317	Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach
Q33962784	Functional characterization of breast cancer using pathway profiles
Q39468520	Functional characterization of drought-responsive modules and genes in Oryza sativa: a network-based approach
Q54468515	Functional classification of drugs by properties of their pairwise interactions.
Q27325629	Functional connectivity in islets of Langerhans from mouse pancreas tissue slices
Q41791587	Functional consequences of necdin nucleocytoplasmic localization.
Q37561009	Functional constraints on adaptive evolution of protein ubiquitination sites
Q47136082	Functional diversity of topological modules in human protein-protein interaction networks.
Q36393304	Functional dyadicity and heterophilicity of gene-gene interactions in statistical epistasis networks
Q33581372	Functional enrichment analyses and construction of functional similarity networks with high confidence function prediction by PFP.
Q42658846	Functional genome annotation through phylogenomic mapping
Q37685112	Functional genomics and networks: new approaches in the extraction of complex gene modules
Q34073498	Functional genomics and rheumatoid arthritis: where have we been and where should we go?
Q37825465	Functional genomics of the brain: uncovering networks in the CNS using a systems approach
Q38487175	Functional genomics suggest neurogenesis in the adult human olfactory bulb
Q38513989	Functional meta-analysis of double connectivity in gene coexpression networks in mammals
Q33716971	Functional molecular ecological networks
Q91671552	Functional network analysis of gene-phenotype connectivity based on pioglitazone
Q37373520	Functional organization of the transcriptome in human brain
Q37083698	Functional organization of the yeast proteome by a yeast interactome map
Q38492010	Functional-Network-Based Gene Set Analysis Using Gene-Ontology
Q37437626	Functional/activity network (FAN) analysis of gene-phenotype connectivity liaised by grape polyphenol resveratrol
Q30519460	Functionalization of a protosynaptic gene expression network
Q36985072	Future directions for drug transporter modelling.
Q92540195	G Protein-Coupled Receptor Systems and Their Role in Cellular Senescence
Q41939614	GASOLINE: a Cytoscape app for multiple local alignment of PPI networks.
Q37376179	GCGene: a gene resource for gastric cancer with literature evidence.
Q57465007	GLIS2 redundancy causes chemoresistance and poor prognosis of gastric cancer based on co‑expression network analysis
Q47716837	Gaining insights into cancer biology through exploration of the cancer secretome using proteomic and bioinformatic tools.
Q43142018	GeNGe: systematic generation of gene regulatory networks
Q60918281	GeNeCK: a web server for gene network construction and visualization
Q57817924	Gene Co-expression Analysis Indicates Potential Pathways and Regulators of Beef Tenderness in Nellore Cattle
Q55218928	Gene Discovery of Characteristic Metabolic Pathways in the Tea Plant (Camellia sinensis) Using 'Omics'-Based Network Approaches: A Future Perspective.
Q39200029	Gene Expression Analysis Through Network Biology: Bioinformatics Approaches
Q64079952	Gene Expression Networks Across Multiple Tissues Are Associated with Rates of Molecular Evolution in Wild House Mice
Q35773963	Gene Network Reconstruction by Integration of Prior Biological Knowledge.
Q28550898	Gene Network Rewiring to Study Melanoma Stage Progression and Elements Essential for Driving Melanoma
Q30571641	Gene Regulatory Network Inference from Multifactorial Perturbation Data Using both Regression and Correlation Analyses
Q89238692	Gene Regulatory Network Perturbation by Genetic and Epigenetic Variation
Q34117275	Gene Regulatory Network Reconstruction Using Bayesian Networks, the Dantzig Selector, the Lasso and Their Meta-Analysis
Q64067902	Gene Saturation: An Approach to Assess Exploration Stage of Gene Interaction Networks
Q33646398	Gene co-citation networks associated with worker sterility in honey bees
Q37632815	Gene co-expression network analysis reveals common system-level properties of prognostic genes across cancer types
Q33611013	Gene co-expression network connectivity is an important determinant of selective constraint
Q50718927	Gene coexpression as Hebbian learning in prokaryotic genomes
Q84179075	Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice
Q48115184	Gene coexpression networks reveal key drivers of phenotypic divergence in lake whitefish
Q33235411	Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks
Q30493003	Gene divergence and pathway duplication in the metabolic network of yeast and digital organisms
Q41839279	Gene duplication of type-B ARR transcription factors systematically extends transcriptional regulatory structures in Arabidopsis
Q52980746	Gene essentiality and the topology of protein interaction networks.
Q21142656	Gene expression prediction by soft integration and the elastic net-best performance of the DREAM3 gene expression challenge
Q41836488	Gene expression profiling in neutrophils from children with polyarticular juvenile idiopathic arthritis
Q35809223	Gene expression profiling of the human natural killer cell response to Fc receptor activation: unique enhancement in the presence of interleukin-12.
Q24802795	Gene family evolution: an in-depth theoretical and simulation analysis of non-linear birth-death-innovation models
Q36169906	Gene network effects on brain microstructure and intellectual performance identified in 472 twins
Q33955036	Gene networks and metacommunities: dispersal differences can override adaptive advantage.
Q39011229	Gene networks in skeletal muscle following endurance exercise are coexpressed in blood neutrophils and linked with blood inflammation markers.
Q38891765	Gene networks show associations with seed region connectivity.
Q30828640	Gene pleiotropy constrains gene expression changes in fish adapted to different thermal conditions
Q34252833	Gene regulation is governed by a core network in hepatocellular carcinoma.
Q63975675	Gene regulatory networks on transfer entropy (GRNTE): a novel approach to reconstruct gene regulatory interactions applied to a case study for the plant pathogen Phytophthora infestans
Q34987284	Gene-centered regulatory networks.
Q21135363	Gene-disease network analysis reveals functional modules in mendelian, complex and environmental diseases
Q36811822	Gene-set Analysis with CGI Information for Differential DNA Methylation Profiling
Q55162855	Generalized lattice graphs for 2D-visualization of biological information
Q42939175	Generation and Evaluation of a Genome-Scale Metabolic Network Model of Synechococcus elongatus PCC7942.
Q35060175	Genes associated with thermosensitive genic male sterility in rice identified by comparative expression profiling.
Q28751745	Genes encoding hub and bottleneck enzymes of the Arabidopsis metabolic network preferentially retain homeologs through whole genome duplication
Q33557572	Genes related to the very early stage of ConA-induced fulminant hepatitis: a gene-chip-based study in a mouse model
Q54691706	Genes under weaker stabilizing selection increase network evolvability and rapid regulatory adaptation to an environmental shift.
Q28744676	Genetic Architecture of Growth Traits Revealed by Global Epistatic Interactions
Q25255039	Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality
Q38117619	Genetic Interaction Networks: Toward an Understanding of Heritability
Q93039486	Genetic Variation for Ontogenetic Shifts in Metabolism Underlies Physiological Homeostasis in Drosophila
Q38632072	Genetic analysis of the Candida albicans biofilm transcription factor network using simple and complex haploinsufficiency.
Q34549759	Genetic architecture of gene expression in the chicken
Q28478625	Genetic co-occurrence network across sequenced microbes
Q92830480	Genetic compensation triggered by mutant mRNA degradation
Q38680916	Genetic compensation: A phenomenon in search of mechanisms.
Q41853251	Genetic diversity and networks of exchange: a combined approach to assess intra-breed diversity
Q33831947	Genetic epidemiology of diabetes
Q43046092	Genetic interactions: the missing links for a better understanding of cancer susceptibility, progression and treatment.
Q40012170	Genetic network analysis of human CD34+ hematopoietic stem/precursor cells
Q33382294	Genetic noise control via protein oligomerization
Q33894474	Genetic tools and algorithms for gene discovery in major congenital anomalies
Q26865707	Genetic, transcriptomic, and epigenetic studies of HIV-associated neurocognitive disorder
Q26830572	Genetics of sexual development: an evolutionary playground for fish
Q30431554	Genetics of type 1 diabetes: what's next?
Q21133651	Genome-Scale Screening of Drug-Target Associations Relevant to Ki Using a Chemogenomics Approach
Q37377851	Genome-Wide Analysis of a Wnt1-Regulated Transcriptional Network Implicates Neurodegenerative Pathways
Q37693515	Genome-Wide Analysis of lncRNA and mRNA Expression During Differentiation of Abdominal Preadipocytes in the Chicken.
Q35909882	Genome-Wide Analysis of the Lysine Biosynthesis Pathway Network during Maize Seed Development
Q55339963	Genome-Wide Identification and Classification of Soybean C2H2 Zinc Finger Proteins and Their Expression Analysis in Legume-Rhizobium Symbiosis.
Q41158225	Genome-Wide Scale-Free Network Inference for Candida albicans
Q51032785	Genome-scale analysis of Mannheimia succiniciproducens metabolism
Q35023929	Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes
Q34372952	Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis
Q58614877	Genome-wide analysis of long non-coding RNAs in esophageal squamous cell carcinoma reveals their potential role in invasion and metastasis
Q38512531	Genome-wide identification of osmotic stress response gene in Arabidopsis thaliana.
Q100408131	Genome-wide interologous interactome map (TeaGPIN) of Camellia sinensis
Q37231658	Genome-wide methylated CpG island profiles of melanoma cells reveal a melanoma coregulation network
Q33791193	Genome-wide patterns of promoter sharing and co-expression in bovine skeletal muscle
Q54196068	Genome-wide screening and co-expression network analysis identify recurrence-specific biomarkers of esophageal squamous cell carcinoma
Q34699192	Genome-wide search for the genes accountable for the induced resistance to HIV-1 infection in activated CD4+ T cells: apparent transcriptional signatures, co-expression networks and possible cellular processes
Q28082561	Genome-wide significant loci: how important are they? Systems genetics to understand heritability of coronary artery disease and other common complex disorders
Q35162344	Genome-wide snapshot of chromatin regulators and states in Xenopus embryos by ChIP-Seq
Q35436208	Genomes, Proteomes, and the Central Dogma
Q24527374	Genomes, phylogeny, and evolutionary systems biology
Q38562247	Genomewide effects of peroxisome proliferator-activated receptor gamma in macrophages and dendritic cells--revealing complexity through systems biology
Q47909298	Genome‑wide analysis and prediction of functional long noncoding RNAs in osteoblast differentiation under simulated microgravity
Q34348943	Genomic analysis of regulatory network dynamics reveals large topological changes
Q37330215	Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture
Q36673455	Genomic chart guiding embryonic stem cell cardiopoiesis
Q57454614	Genomic data integration systematically biases interactome mapping
Q35301939	Genomic heterogeneity of osteosarcoma - shift from single candidates to functional modules
Q43593666	Genomic signatures of specialized metabolism in plants
Q38115030	Genomics and transcriptomics in drug discovery
Q64387225	Genotoxicity of zinc oxide nanoparticles: an and study
Q33543376	Genotype networks in metabolic reaction spaces
Q44185188	Genotype–phenotype relationships in light of a modular protein interaction landscape
Q21145373	Geometric interpretation of gene coexpression network analysis
Q89531517	Global Network Analysis of Neisseria gonorrhoeae Identifies Coordination between Pathways, Processes, and Regulators Expressed during Human Infection
Q28486526	Global analysis of the human pathophenotypic similarity gene network merges disease module components
Q42153827	Global gene expression profiling displays a network of dysregulated genes in non-atherosclerotic arterial tissue from patients with type 2 diabetes
Q39207839	Global mapping of gene/protein interactions in PubMed abstracts: a framework and an experiment with P53 interactions
Q33581065	Global network analysis of phenotypic effects: protein networks and toxicity modulation in Saccharomyces cerevisiae
Q33993374	Global organization of protein complexome in the yeast Saccharomyces cerevisiae.
Q33737030	Global protein interactome exploration through mining genome-scale data in Arabidopsis thaliana
Q33558868	Global regulatory architecture of human, mouse and rat tissue transcriptomes
Q33366523	Global self-organization of the cellular metabolic structure.
Q33257304	Global similarity and local divergence in human and mouse gene co-expression networks
Q40097830	Global temporal dynamic landscape of pathogen-mediated subversion of Arabidopsis innate immunity
Q34050208	Global transcriptome-wide analysis of CIK cells identify distinct roles of IL-2 and IL-15 in acquisition of cytotoxic capacity against tumor
Q47679707	Global transcriptome‑wide analysis of the function of GDDR in acute gastric lesions
Q51376589	Gold Nanoparticle Reprograms Pancreatic Tumor Microenvironment and Inhibits Tumor Growth.
Q35844979	Gonadal Transcriptome Analysis in Sterile Double Haploid Japanese Flounder
Q35012998	Graemlin: general and robust alignment of multiple large interaction networks
Q42059429	Grand Challenges in Plant Systems Biology: Closing the Circle(s)
Q47912821	Graph Theory-Based Analysis of the Lymph Node Fibroblastic Reticular Cell Network.
Q37742784	Graph methods for the investigation of metabolic networks in parasitology
Q30408206	Graph pyramids for protein function prediction
Q39110019	Graph reconstruction using covariance-based methods
Q37004926	Graph theoretical analysis of resting magnetoencephalographic functional connectivity networks
Q89830523	Graph-based description of tertiary lymphoid organs at single-cell level
Q36264926	Graph-theoretical model of global human interactome reveals enhanced long-range communicability in cancer networks
Q38513822	GraphWeb: mining heterogeneous biological networks for gene modules with functional significance
Q38806208	Graphical Modeling Meets Systems Pharmacology.
Q30874969	Graphical algorithm for integration of genetic and biological data: proof of principle using psoriasis as a model
Q28595997	Graphlet characteristics in directed networks
Q35844486	GreedyPlus: An Algorithm for the Alignment of Interface Interaction Networks
Q41334951	Grip on complexity in chemical reaction networks
Q30941980	Ground state robustness as an evolutionary design principle in signaling networks
Q37663909	Growing trend of CE at the omics level: the frontier of systems biology
Q30481723	H2r: identification of evolutionary important residues by means of an entropy based analysis of multiple sequence alignments.
Q36284301	HAPPI-2: a Comprehensive and High-quality Map of Human Annotated and Predicted Protein Interactions
Q64079815	HOXD-AS1 promotes the epithelial to mesenchymal transition of ovarian cancer cells by regulating miR-186-5p and PIK3R3
Q92816080	Hamiltonian energy as an efficient approach to identify the significant key regulators in biological networks
Q28755546	Harnessing naturally randomized transcription to infer regulatory relationships among genes
Q30580995	Harnessing the complexity of gene expression data from cancer: from single gene to structural pathway methods
Q39030138	Health-beneficial nutraceuticals-myth or reality?
Q35339906	Heat Shock Partially Dissociates the Overlapping Modules of the Yeast Protein-Protein Interaction Network: A Systems Level Model of Adaptation
Q33301924	Heat shock response in CHO mammalian cells is controlled by a nonlinear stochastic process
Q60054363	Heterologous Hsp90 promotes phenotypic diversity through network evolution
Q33747876	HiNO: An Approach for Inferring Hierarchical Organization from Regulatory Networks
Q34663740	Hidden Information Revealed by Optimal Community Structure from a Protein-Complex Bipartite Network Improves Protein Function Prediction
Q36036240	Hidden protein folding pathways in free-energy landscapes uncovered by network analysis
Q33484411	Hierarchical coordination of periodic genes in the cell cycle of Saccharomyces cerevisiae
Q35632380	Hierarchical decomposition of dynamically evolving regulatory networks
Q51925250	Hierarchical evolution of animal body plans
Q35624419	Hierarchical feedback modules and reaction hubs in cell signaling networks
Q28728757	Hierarchical ordering of reticular networks
Q24804022	Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach
Q34206403	High accordance in prognosis prediction of colorectal cancer across independent datasets by multi-gene module expression profiles
Q58043174	High end complexity
Q38122110	High throughput strategies for probing the different organizational levels of protein interaction networks
Q90340991	High-throughput screening identified miR-7-2-3p and miR-29c-3p as metastasis suppressors in gallbladder carcinoma
Q35865474	High-throughput transcriptomics reveals common and strain-specific responses of human macrophages to infection with Mycobacterium abscessus Smooth and Rough variants
Q34464380	High-throughput two-hybrid analysis. The promise and the peril
Q21090236	Highly nonrandom features of synaptic connectivity in local cortical circuits
Q42778297	Highly-interwoven communities of a gene regulatory network unveil topologically important genes for maize seed development.
Q47190089	HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
Q49835840	Histological analysis and identification of spermatogenesis-related genes in 2-, 6-, and 12-month-old sheep testes
Q38019869	History of protein-protein interactions: from egg-white to complex networks
Q33229367	HomoMINT: an inferred human network based on orthology mapping of protein interactions discovered in model organisms
Q36437510	Host-pathogen systems biology
Q35198634	How and when should interactome-derived clusters be used to predict functional modules and protein function?
Q24790990	How biologically relevant are interaction-based modules in protein networks?
Q37398961	How can social network analysis contribute to social behavior research in applied ethology?
Q37823482	How can social network analysis improve the study of primate behavior?
Q98166067	How do cancer cells replenish their fuel supply?
Q26749581	How to Predict Molecular Interactions between Species?
Q33366495	How to build transcriptional network models of mammalian pattern formation
Q38089151	How to design multi-target drugs.
Q28088587	How to train your microbe: methods for dynamically characterizing gene networks
Q37756001	Hub promiscuity in protein-protein interaction networks
Q42801052	Hubs in biological interaction networks exhibit low changes in expression in experimental asthma
Q33306693	Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeast
Q39762235	Human cancer classification: a systems biology- based model integrating morphology, cancer stem cells, proteomics, and genomics
Q28472174	Human cancer protein-protein interaction network: a structural perspective
Q35940380	Human disease classification in the postgenomic era: a complex systems approach to human pathobiology
Q28475892	Human disease-drug network based on genomic expression profiles
Q30951066	Human liver rate-limiting enzymes influence metabolic flux via branch points and inhibitors
Q41911573	Hydrophobic, hydrophilic, and charged amino acid networks within protein
Q61799902	Hypoxia-targeted drug delivery
Q33892242	Hysteresis in a synthetic mammalian gene network
Q58275870	INFORMATION-THEORETIC CONCEPTS FOR THE ANALYSIS OF COMPLEX NETWORKS
Q25255603	INTEGRATOR: interactive graphical search of large protein interactomes over the Web.
Q55518821	INTERSPIA: a web application for exploring the dynamics of protein-protein interactions among multiple species.
Q36904392	INstruct: a database of high-quality 3D structurally resolved protein interactome networks
Q35868482	IRES-dependent translated genes in fungi: computational prediction, phylogenetic conservation and functional association.
Q112297342	Identification and Validation of Key Genes in Hepatocellular Carcinoma by Bioinformatics Analysis
Q36262482	Identification of Entry Factors Involved in Hepatitis C Virus Infection Based on Host-Mimicking Short Linear Motifs.
Q46140917	Identification of Essential Proteins Based on Edge Clustering Coefficient
Q64261807	Identification of Gene Expression Changes Associated With Uterine Receptivity in Mice
Q46082371	Identification of Gene Expression Changes in the Aorta of ApoE Null Mice Fed a High-Fat Diet
Q34290832	Identification of Gene Modules Associated with Drought Response in Rice by Network-Based Analysis
Q34023904	Identification of Hub Genes Related to the Recovery Phase of Irradiation Injury by Microarray and Integrated Gene Network Analysis
Q64076675	Identification of Important Effector Proteins in the FOXJ1 Transcriptional Network Associated With Ciliogenesis and Ciliary Function
Q35863572	Identification of Major Signaling Pathways in Prion Disease Progression Using Network Analysis
Q31148631	Identification of Risk Pathways and Functional Modules for Coronary Artery Disease Based on Genome-wide SNP Data.
Q40035270	Identification of cancer fusion drivers using network fusion centrality.
Q35187558	Identification of candidate genes related to bovine marbling using protein-protein interaction networks
Q35416341	Identification of common regulators of genes in co-expression networks affecting muscle and meat properties
Q92726008	Identification of critical connectors in the directed reaction-centric graphs of microbial metabolic networks
Q37475825	Identification of critical paralog groups with indispensable roles in the regulation of signaling flow
Q33529036	Identification of crosstalk between phosphoprotein signaling pathways in RAW 264.7 macrophage cells
Q36226478	Identification of cyclin B1 and Sec62 as biomarkers for recurrence in patients with HBV-related hepatocellular carcinoma after surgical resection
Q37519334	Identification of disease comorbidity through hidden molecular mechanisms
Q33571071	Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
Q38472617	Identification of gene expression profile in the rat brain resulting from acute alcohol intoxication
Q92512470	Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types
Q96577389	Identification of important genes and drug repurposing based on clinical-centered analysis across human cancers
Q42275170	Identification of infection- and defense-related genes via a dynamic host-pathogen interaction network using a Candida albicans-zebrafish infection model.
Q35036420	Identification of inflammatory gene modules based on variations of human endothelial cell responses to oxidized lipids
Q93090170	Identification of key candidate genes and miRNA‑mRNA target pairs in chronic lymphocytic leukemia by integrated bioinformatics analysis
Q31044596	Identification of key genes associated with gastric cancer based on DNA microarray data
Q89966695	Identification of key genes associated with multiple sclerosis based on gene expression data from peripheral blood mononuclear cells
Q36124197	Identification of key player genes in gene regulatory networks.
Q51380778	Identification of key regulators and their controlling mechanism in a combinatorial apoptosis network: a systems biology approach.
Q90268194	Identification of lncRNA-associated differential subnetworks in oesophageal squamous cell carcinoma by differential co-expression analysis
Q33496319	Identification of network topological units coordinating the global expression response to glucose in Bacillus subtilis and its comparison to Escherichia coli
Q55346310	Identification of novel drug targets for diamond-blackfan anemia based on RPS19 gene mutation using protein-protein interaction network.
Q45358984	Identification of potential host proteins for influenza A virus based on topological and biological characteristics by proteome-wide network approach
Q49363717	Identification of prognostic signature in cancer based on DNA methylation interaction network
Q30658102	Identification of putative drug targets for human sperm-egg interaction defect using protein network approach
Q40340780	Identification of the crucial genes in the elimination and survival process of Salmonella enterica ser. Pullorum in the chicken spleen
Q37203059	Identification, nomenclature, and evolutionary relationships of mitogen-activated protein kinase (MAPK) genes in soybean
Q34359181	Identifying Responsive Modules by Mathematical Programming: An Application to Budding Yeast Cell Cycle
Q43961450	Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model
Q33755187	Identifying aging-related genes in mouse hippocampus using gateway nodes
Q37621735	Identifying causal networks linking cancer processes and anti-tumor immunity using Bayesian network inference and metagene constructs.
Q35470702	Identifying critical regions in small-world marine metapopulations
Q33421110	Identifying disease-specific genes based on their topological significance in protein networks
Q33570986	Identifying essential genes in bacterial metabolic networks with machine learning methods
Q55518657	Identifying frequent patterns in biochemical reaction networks: a workflow.
Q33912070	Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method
Q30862028	Identifying hubs in protein interaction networks
Q31031810	Identifying miRNA synergistic regulatory networks in heterogeneous human data via network motifs.
Q31038202	Identifying network-based biomarkers of complex diseases from high-throughput data
Q41903687	Identifying new targets in leukemogenesis using computational approaches
Q35703980	Identifying novel associations between small molecules and miRNAs based on integrated molecular networks
Q33633459	Identifying potential survival strategies of HIV-1 through virus-host protein interaction networks.
Q38115517	Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks
Q35102034	Identifying protein complexes based on density and modularity in protein-protein interaction network
Q33520072	Identifying significant genetic regulatory networks in the prostate cancer from microarray data based on transcription factor analysis and conditional independency
Q30443419	Identifying tinnitus-related genes based on a side-effect network analysis
Q33858844	Immunological network signatures of cancer progression and survival
Q35067331	Impact of noise on molecular network inference
Q21202794	Impact of the solvent capacity constraint on E. coli metabolism
Q35804594	Impaired expression of NER gene network in sporadic solid tumors
Q28708952	Implications of Systemic Dysfunction for the Etiology of Malignancy
Q35952157	Implications of gene networks for understanding resilience and vulnerability in the kidney branching program
Q36322160	Improved understanding of gene expression regulation using systems biology
Q34056825	Improving accuracy of protein-protein interaction prediction by considering the converse problem for sequence representation
Q40781185	Improving gene regulatory network inference using network topology information.
Q38625561	In search for symmetries in the metabolism of cancer
Q35828145	In search of the biological significance of modular structures in protein networks
Q37655004	In silico evidence of signaling pathways of notch mediated networks in leukemia
Q38968891	In silico frameworks for systematic pre-clinical screening of potential anti-leukemia therapeutics
Q36183157	In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks
Q40064969	In silico pathway analysis: the final frontier towards completely rational drug design
Q33304043	InPrePPI: an integrated evaluation method based on genomic context for predicting protein-protein interactions in prokaryotic genomes
Q52561210	IncGraph: Incremental graphlet counting for topology optimisation
Q52334326	Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle.
Q54974177	Incorporating catechol into electroactive polypyrrole nanowires on titanium to promote hydroxyapatite formation.
Q35008864	Incorporating motif analysis into gene co-expression networks reveals novel modular expression pattern and new signaling pathways
Q36277294	Incorporating prior biological knowledge for network-based differential gene expression analysis using differentially weighted graphical LASSO.
Q33645935	Increased entropy of signal transduction in the cancer metastasis phenotype
Q35545639	Increased signaling entropy in cancer requires the scale-free property of protein interaction networks
Q47301724	IndeCut evaluates performance of network motif discovery algorithms.
Q40446901	Indexing a protein-protein interaction network expedites network alignment.
Q57809322	Indirubin attenuates mouse psoriasis-like skin lesion in a CD274-dependent manner: an achievement of RNA sequencing
Q36318541	Individualised cancer therapeutics: dream or reality?
Q38498315	Infection Strategies of Bacterial and Viral Pathogens through Pathogen-Human Protein-Protein Interactions
Q30791224	Inference and validation of predictive gene networks from biomedical literature and gene expression data
Q43211194	Inference for High-dimensional Differential Correlation Matrices
Q41930584	Inference of a Geminivirus-Host Protein-Protein Interaction Network through Affinity Purification and Mass Spectrometry Analysis
Q35701117	Inference of brain pathway activities for Alzheimer's disease classification
Q30558851	Inference of causal networks from time-varying transcriptome data via sparse coding
Q33535230	Inference of gene regulatory networks using time-series data: a survey
Q49719068	Inferences of individual drug responses across diverse cancer types using a novel competing endogenous RNA network
Q30953287	Inferring Broad Regulatory Biology from Time Course Data: Have We Reached an Upper Bound under Constraints Typical of In Vivo Studies?
Q58615814	Inferring Novel Autophagy Regulators Based on Transcription Factors and Non-Coding RNAs Coordinated Regulatory Network
Q95840329	Inferring Virus-Host relationship between HPV and its host Homo sapiens using protein interaction network
Q34272624	Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs.
Q31107770	Inferring active regulatory networks from gene expression data using a combination of prior knowledge and enrichment analysis.
Q48445631	Inferring biomolecular regulatory networks from phase portraits of time-series expression profiles
Q38022502	Inferring gene functions through dissection of relevance networks: interleaving the intra- and inter-species views
Q34305232	Inferring general relations between network characteristics from specific network ensembles
Q31104442	Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data
Q33651810	Inferring miRNA sponge co-regulation of protein-protein interactions in human breast cancer.
Q34039429	Inferring network connectivity by delayed feedback control
Q61799635	Inferring pathogen-host interactions between Leptospira interrogans and Homo sapiens using network theory
Q51229736	Inferring pathway crosstalk networks using gene set co-expression signatures
Q34060723	Inferring pleiotropy by network analysis: linked diseases in the human PPI network
Q33709649	Inferring the conservative causal core of gene regulatory networks
Q64254563	Inferring the regulatory network of the miRNA-mediated response to biotic and abiotic stress in melon
Q33507905	Inferring the transcriptional landscape of bovine skeletal muscle by integrating co-expression networks
Q39547114	Inflammation-Related Signaling Pathways Implicating TGFβ are Revealed in the Expression Profiling of MCF7 Cell Treated with Fermented Soybean, Chungkookjang
Q41850598	Influence networks based on coexpression improve drug target discovery for the development of novel cancer therapeutics
Q47593171	Influence of network topology on cooperative problem-solving systems
Q33463431	Influence of protein abundance on high-throughput protein-protein interaction detection
Q42630185	Information Connections among Multiple Investors: Evolutionary Local Patterns Revealed by Motifs
Q28475566	Information flow analysis of interactome networks
Q33419719	Information processing in the transcriptional regulatory network of yeast: functional robustness
Q58577730	Information spectra and optimal background states for dynamical networks
Q38526804	Information-theoretic sensitivity analysis: a general method for credit assignment in complex networks
Q41184072	Inherent characteristics of gene expression for buffering environmental changes without the corresponding transcriptional regulations
Q36764876	Inhibiting kinases in malignant gliomas
Q93047981	Inpatient Communication Networks: Leveraging Secure Text-Messaging Platforms to Gain Insight into Inpatient Communication Systems
Q28073465	Insect Gallers and Their Plant Hosts: From Omics Data to Systems Biology
Q36385287	Insights from molecular investigations of traditional Chinese herbal stroke medicines: implications for neuroprotective epilepsy therapy
Q55386874	Insights into the Function of Long Noncoding RNAs in Sepsis Revealed by Gene Co-Expression Network Analysis.
Q34602621	Insights on the functional impact of microRNAs present in autism-associated copy number variants
Q33263964	IntNetDB v1.0: an integrated protein-protein interaction network database generated by a probabilistic model
Q48235527	Integrated Analyses Reveal Overexpressed Notch1 Promoting Porcine Satellite Cells' Proliferation through Regulating the Cell Cycle.
Q47195431	Integrated Analysis of Proteomic and Transcriptomic Data Highlights Late Fetal Muscle Maturation Process.
Q92155677	Integrated Metabolomics and Network Pharmacology Study on Immunoregulation Mechanisms of Panax ginseng through Macrophages
Q36364136	Integrated analysis of global proteome, phosphoproteome, and glycoproteome enables complementary interpretation of disease-related protein networks
Q55205534	Integrated analysis of long noncoding RNA and mRNA expression profile in children with obesity by microarray analysis.
Q33538321	Integrated cellular network of transcription regulations and protein-protein interactions
Q45835957	Integrated gene co-expression network analysis in the growth phase of Mycobacterium tuberculosis reveals new potential drug targets.
Q38672252	Integrated metagenomic analysis of the rumen microbiome of cattle reveals key biological mechanisms associated with methane traits.
Q27940381	Integrated phosphoproteomics analysis of a signaling network governing nutrient response and peroxisome induction
Q52680958	Integrated proteomics and network analysis identifies protein hubs and network alterations in Alzheimer's disease
Q92587287	Integrated transcriptome interactome study of oncogenes and tumor suppressor genes in breast cancer
Q47961367	Integrating Imaging Genomic Data in the Quest for Biomarkers for Schizophrenia Disease
Q55237555	Integrating Phylogenetic and Network Approaches to Study Gene Family Evolution: The Case of the AGAMOUS Family of Floral Genes.
Q46673326	Integrating QTL and high-density SNP analyses in mice to identify Insig2 as a susceptibility gene for plasma cholesterol levels
Q57050733	Integrating Structural Information to Study the Dynamics of Protein-Protein Interactions in Cells
Q64087016	Integrating gene regulatory pathways into differential network analysis of gene expression data
Q31044902	Integrating genetic and gene expression data: application to cardiovascular and metabolic traits in mice
Q33255339	Integrating genetic and network analysis to characterize genes related to mouse weight
Q34666235	Integrating molecular and network biology to decode endocytosis
Q90478903	Integrating molecular networks with genetic variant interpretation for precision medicine
Q40963834	Integrating the Alzheimer's Disease Proteome and Transcriptome: A Comprehensive Network Model of a Complex Disease
Q34500054	Integrating the interactome and the transcriptome of Drosophila
Q49266877	Integration analysis of microRNA and mRNA paired expression profiling identifies deregulated microRNA-transcription factor-gene regulatory networks in ovarian endometriosis
Q35868167	Integration and channeling of calcium signaling through the CBL calcium sensor/CIPK protein kinase network.
Q26786552	Integration of 'omics' data in aging research: from biomarkers to systems biology
Q38802358	Integration of Chinese medicine with Western medicine could lead to future medicine: molecular module medicine
Q30994668	Integration of quantitative proteomics data and interaction networks: Identification of dysregulated cellular functions during cancer progression.
Q38673851	Integration of structural dynamics and molecular evolution via protein interaction networks: a new era in genomic medicine
Q34177262	Integration strategy is a key step in network-based analysis and dramatically affects network topological properties and inferring outcomes
Q64245545	Integrative Analyses of Genes Associated with Subcutaneous Insulin Resistance
Q90177000	Integrative Analysis for Identifying Co-Modules of Microbe-Disease Data by Matrix Tri-Factorization With Phylogenetic Information
Q33940698	Integrative Analysis of Many Weighted Co-Expression Networks Using Tensor Computation
Q41217019	Integrative Bioinformatics Analysis of Proteins Associated with the Cardiorenal Syndrome
Q91712018	Integrative Computational Framework for Understanding Metabolic Modulation in Leishmania
Q58572628	Integrative Computational Modeling of the Lymph Node Stromal Cell Landscape
Q92556970	Integrative Construction and Analysis of Molecular Association Network in Human Cells by Fusing Node Attribute and Behavior Information
Q37961088	Integrative Genomics Strategies to Elucidate the Complexity of Drug Response
Q36280564	Integrative analysis of gene and miRNA expression profiles with transcription factor-miRNA feed-forward loops identifies regulators in human cancers
Q31120979	Integrative analysis of human omics data using biomolecular networks
Q39155136	Integrative analysis of ocular complications in atherosclerosis unveils pathway convergence and crosstalk.
Q40167790	Integrative approach for the analysis of the proteome-wide response to bismuth drugs in Helicobacter pylori
Q26824897	Integrative approaches for finding modular structure in biological networks
Q50068180	Integrative gene ontology and network analysis of coronary artery disease associated genes suggests potential role of ErbB pathway gene EGFR.
Q35976931	Integrative miRNA-mRNA profiling of adipose tissue unravels transcriptional circuits induced by sleep fragmentation
Q52407848	Integrative network-based approach identifies central genetic and transcriptomic elements in triple-negative breast cancer
Q37788974	Integrative systems biology and networks in autophagy
Q36193399	Integrative transcriptome network analysis of iPSC-derived neurons from schizophrenia and schizoaffective disorder patients with 22q11.2 deletion
Q33591910	Integrins as "functional hubs" in the regulation of pathological angiogenesis
Q50612850	Interaction and localization diversities of global and local hubs in human protein-protein interaction networks
Q40810687	Interaction network of tobacco etch potyvirus NIa protein with the host proteome during infection
Q40538084	Interactions between distant ceRNAs in regulatory networks
Q42696609	Interactive network visualization in Jupyter notebooks: visJS2jupyter
Q33482481	Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell
Q37626307	Interactome disassembly during apoptosis occurs independent of caspase cleavage
Q38010411	Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays
Q29615773	Interactome networks and human disease
Q36244121	Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
Q36257382	Interactome: gateway into systems biology
Q21129288	Interactomic and pharmacological insights on human sirt-1
Q34714652	Interfacing cellular networks of S. cerevisiae and E. coli: connecting dynamic and genetic information
Q35634220	Interferon regulatory factor 7 is a major hub connecting interferon-mediated responses in virus-induced asthma exacerbations in vivo
Q80733897	Intermediate phenotypes in schizophrenia genetics redux: is it a no brainer?
Q48273918	Intermittent hypoxia activates temporally coordinated transcriptional programs in visceral adipose tissue
Q34197603	Intermittent hypoxia mobilizes bone marrow-derived very small embryonic-like stem cells and activates developmental transcriptional programs in mice
Q35148006	Intermolecular β-strand networks avoid hub residues and favor low interconnectedness: a potential protection mechanism against chain dissociation upon mutation
Q42580062	Interplay between Topology and Dynamics in Excitation Patterns on Hierarchical Graphs
Q33294540	Interplay between network structures, regulatory modes and sensing mechanisms of transcription factors in the transcriptional regulatory network of E. coli
Q38614473	Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment
Q35921620	Intracellular crowding defines the mode and sequence of substrate uptake by Escherichia coli and constrains its metabolic activity.
Q33252616	Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
Q42401096	Intrinsically disordered proteins and prostate cancer: pouring new wine in an old bottle
Q42578869	Invariant distribution of promoter activities in Escherichia coli
Q38464048	Invasion and metastasis-related long noncoding RNA expression profiles in hepatocellular carcinoma
Q41595214	Investigating MicroRNA and transcription factor co-regulatory networks in colorectal cancer
Q35159136	Investigating different duplication pattern of essential genes in mouse and human.
Q88391267	Investigating multiple dysregulated pathways in rheumatoid arthritis based on pathway interaction network
Q35178635	Investigating perturbed pathway modules from gene expression data via structural equation models
Q35175249	Investigating the relation between stochastic differentiation, homeostasis and clonal expansion in intestinal crypts via multiscale modeling
Q41761380	Investigating the validity of current network analysis on static conglomerate networks by protein network stratification
Q37486953	Investigating transcriptional regulation: from analysis of complex networks to discovery of cis-regulatory elements
Q92257370	Investigation of Precise Molecular Mechanistic Action of Tobacco-Associated Carcinogen `NNK´ Induced Carcinogenesis: A System Biology Approach
Q33302580	Investigations into the relationship between feedback loops and functional importance of a signal transduction network based on Boolean network modeling
Q28388335	Iron behaving badly: inappropriate iron chelation as a major contributor to the aetiology of vascular and other progressive inflammatory and degenerative diseases
Q37229435	Iron-Sulfur Cluster Biogenesis Chaperones: Evidence for Emergence of Mutational Robustness of a Highly Specific Protein-Protein Interaction
Q42191451	Is central dogma a global property of cellular information flow?
Q51038705	Islands of stability in motif distributions of random networks.
Q52681322	It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data.
Q36917433	It takes two to tango: Ubiquitin and SUMO in the DNA damage response
Q37602163	Iterative Neighbour-Information Gathering for Ranking Nodes in Complex Networks.
Q41018971	Itinerary profiling to analyze a large number of protein-folding trajectories
Q33636441	Jerarca: efficient analysis of complex networks using hierarchical clustering
Q41865846	K-core decomposition of a protein domain co-occurrence network reveals lower cancer mutation rates for interior cores
Q34808521	KATP channel-dependent metaboproteome decoded: systems approaches to heart failure prediction, diagnosis, and therapy
Q37206305	KELLER: estimating time-varying interactions between genes
Q37046380	KIAA0101 is associated with human renal cell carcinoma proliferation and migration induced by erythropoietin
Q82068480	Kendrick-Analogous Network Visualisation of Ion Cyclotron Resonance Fourier Transform Mass Spectra: Improved Options for the Assignment of Elemental Compositions and the Classification of Organic Molecular Complexity
Q34790668	Key genes for modulating information flow play a temporal role as breast tumor coexpression networks are dynamically rewired by letrozole
Q99723255	Kinless hubs are potential target genes in prostate cancer network
Q35510487	Kiwi: a tool for integration and visualization of network topology and gene-set analysis
Q39499352	Knockdown of metallopanstimulin-1 inhibits NF-κB signaling at different levels: the role of apoptosis induction of gastric cancer cells
Q26801048	Knowledge-based analysis of genetic associations of rheumatoid arthritis to inform studies searching for pleiotropic genes: a literature review and network analysis
Q45966424	Knowledge-based computational search for genes associated with the metabolic syndrome.
Q98195618	Knowledge-primed neural networks enable biologically interpretable deep learning on single-cell sequencing data
Q34253535	LDGIdb: a database of gene interactions inferred from long-range strong linkage disequilibrium between pairs of SNPs
Q90196927	LINC01232 exerts oncogenic activities in pancreatic adenocarcinoma via regulation of TM9SF2
Q35756386	Lack of association between bcl-2 expression and prognosis of osteosarcoma: a meta-analysis
Q37723648	Laminar and temporal expression dynamics of coding and noncoding RNAs in the mouse neocortex
Q88979611	Large Scale Proteomic Data and Network-Based Systems Biology Approaches to Explore the Plant World
Q38712554	Large-Scale trans-eQTLs Affect Hundreds of Transcripts and Mediate Patterns of Transcriptional Co-regulation
Q38816396	Large-scale detection of drug off-targets: hypotheses for drug repurposing and understanding side-effects
Q34275017	Large-scale functional organization of long-range chromatin interaction networks
Q46478228	Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism
Q64066934	Large-scale network analysis reveals the sequence space architecture of antibody repertoires
Q34133640	Large‐scale mapping of human protein interactome using structural complexes
Q27015436	Learning from Co-expression Networks: Possibilities and Challenges
Q50466142	Learning the Structural Vocabulary of a Network
Q91670973	Leveraging User-Friendly Network Approaches to Extract Knowledge From High-Throughput Omics Datasets
Q34243849	Limitations of Gene Duplication Models: Evolution of Modules in Protein Interaction Networks
Q38763272	Limitations of a metabolic network-based reverse ecology method for inferring host-pathogen interactions
Q37608807	Limited influence of oxygen on the evolution of chemical diversity in metabolic networks.
Q34987289	Lineage-specific transcription factors and the evolution of gene regulatory networks
Q34796394	Link clustering reveals structural characteristics and biological contexts in signed molecular networks
Q37845324	Linking the proteins—Elucidation of proteome‐scale networks using mass spectrometry
Q41673163	Lipid Metabolic Versatility in Malassezia spp. Yeasts Studied through Metabolic Modeling
Q61803798	LncRNA Expression Profiling of Ischemic Stroke During the Transition From the Acute to Subacute Stage
Q47831581	LncRNA-PAGBC acts as a microRNA sponge and promotes gallbladder tumorigenesis.
Q46245573	Location, Root Proximity, and Glyphosate-Use History Modulate the Effects of Glyphosate on Fungal Community Networks of Wheat
Q42542819	Locus heterogeneity disease genes encode proteins with high interconnectivity in the human protein interaction network
Q26828561	Long Intergenic Non-Coding RNAs: Novel Drivers of Human Lymphocyte Differentiation
Q87419519	Long non-coding RNA NR_045623 and NR_028291 involved in benzene hematotoxicity in occupationally benzene-exposed workers
Q92368930	Long non-coding RNAs in the spinal cord injury: Novel spotlight
Q46800418	Long noncoding RNA and mRNA profiling in MDA-MB-231 cells following RNAi-mediated knockdown of SIRT7.
Q33922769	Long noncoding RNA expression profiles in sub-lethal heat-treated hepatoma carcinoma cells
Q45334856	Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans
Q54211983	Long noncoding RNA related to cartilage injury promotes chondrocyte extracellular matrix degradation in osteoarthritis
Q34252809	Long noncoding RNAs expression patterns associated with chemo response to cisplatin based chemotherapy in lung squamous cell carcinoma patients
Q64279937	Long noncoding RNAs predict the survival of patients with colorectal cancer as revealed by constructing an endogenous RNA network using bioinformation analysis
Q38464655	Long noncoding ribonucleic acid specific for distant metastasis of gastric cancer is associated with TRIM16 expression and facilitates tumor cell invasion in vitro
Q35077765	Long-term effects of subacute ruminal acidosis (SARA) on milk quality and hepatic gene expression in lactating goats fed a high-concentrate diet
Q46262683	Longitudinal system-based analysis of transcriptional responses to type I interferons
Q37525535	Loss of connectivity in cancer co-expression networks.
Q26801350	Low-grade inflammation, diet composition and health: current research evidence and its translation
Q47710113	M-path: a compass for navigating potential metabolic pathways
Q36278167	MAPanalyzer: a novel online tool for analyzing microtubule-associated proteins
Q30841031	MCentridFS: a tool for identifying module biomarkers for multi-phenotypes from high-throughput data
Q37811895	MET signalling: principles and functions in development, organ regeneration and cancer
Q33780103	MIND-BEST: Web server for drugs and target discovery; design, synthesis, and assay of MAO-B inhibitors and theoretical-experimental study of G3PDH protein from Trichomonas gallinae.
Q24538008	MPact: the MIPS protein interaction resource on yeast
Q33354756	Machine learning based analyses on metabolic networks supports high-throughput knockout screens
Q42958856	Machine learning techniques for single nucleotide polymorphism--disease classification models in schizophrenia.
Q44609278	Machine learning-based differential network analysis: a study of stress-responsive transcriptomes in Arabidopsis.
Q26738970	Maintaining Genome Stability in Defiance of Mitotic DNA Damage
Q36499234	Malignant gliomas: strategies to increase the effectiveness of targeted molecular treatment
Q37060496	Mapping RNA-RNA interactome and RNA structure in vivo by MARIO.
Q55116101	Mapping biological process relationships and disease perturbations within a pathway network.
Q33576898	Mapping the evolution of scientific fields
Q37857537	Mass-balanced randomization of metabolic networks
Q34586391	Massive-scale gene co-expression network construction and robustness testing using random matrix theory
Q35408813	Mathematical controllability of genomic networks
Q35161056	Mathematical descriptions of biochemical networks: Stability, stochasticity, evolution
Q39840970	Mathematical modeling of monolignol biosynthesis in Populus xylem
Q47302138	Matrix Factorization Based Data Fusion for the Prediction of lncRNA-disease Associations.
Q34759450	Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study
Q51611148	Mean first-passage time for random walks on generalized deterministic recursive trees
Q92962253	Measuring rank robustness in scored protein interaction networks
Q38490479	Mechanism of BDE209-induced impaired glucose homeostasis based on gene microarray analysis of adult rat liver
Q33504384	Mechanism-anchored profiling derived from epigenetic networks predicts outcome in acute lymphoblastic leukemia
Q28082759	Mechanisms of mutational robustness in transcriptional regulation
Q83390165	Mechanisms of tumor resistance to EGFR-targeted therapies
Q90667232	Mechanistic and topological explanations in medicine: the case of medical genetics and network medicine
Q91936463	Membrane protein-regulated networks across human cancers
Q38456985	Metabolic Regulation of a Bacterial Cell System with Emphasis on Escherichia coli Metabolism
Q28477060	Metabolic Robustness and Network Modularity: A Model Study
Q37083433	Metabolic compartmentation - a system level property of muscle cells: real problems of diffusion in living cells.
Q57797074	Metabolic determinants of enzyme evolution in a genome-scale bacterial metabolic network
Q34699756	Metabolic fingerprinting as a diagnostic tool.
Q34426189	Metabolic footprinting and systems biology: the medium is the message
Q47563790	Metabolic network modularity arising from simple growth processes
Q31037484	Metabolic network modularity in archaea depends on growth conditions
Q61445639	Metabolic network-based stratification of hepatocellular carcinoma reveals three distinct tumor subtypes
Q34146267	Metabolic networks of Sodalis glossinidius: a systems biology approach to reductive evolution
Q45168780	Metabolic pathway analysis web service (Pathway Hunter Tool at CUBIC).
Q33691139	Metabolic syndrome: from epidemiology to systems biology
Q37578220	Metabolite Profiling of adh1 Mutant Response to Cold Stress in Arabidopsis
Q33235593	Metabolite coupling in genome-scale metabolic networks
Q34477974	Metabolite profiling and network analysis reveal coordinated changes in grapevine water stress response
Q80513306	Metabolite profiling: from diagnostics to systems biology
Q42090811	Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach.
Q45849150	Metabolomic linkage reveals functional interaction between glucose-dependent insulinotropic polypeptide and ghrelin in humans
Q36995227	Metals in the "omics" world: copper homeostasis and cytochrome c oxidase assembly in a new light
Q26778582	Methods for biological data integration: perspectives and challenges
Q34559623	MiRNA–miRNA synergistic network: construction via co-regulating functional modules and disease miRNA topological features
Q33840744	MicroRNA Expression Analysis: Clinical Advantage of Propranolol Reveals Key MicroRNAs in Myocardial Infarction
Q35235617	MicroRNA Regulation and Tissue-Specific Protein Interaction Network
Q36231493	MicroRNA and Transcription Factor Gene Regulatory Network Analysis Reveals Key Regulatory Elements Associated with Prostate Cancer Progression
Q42413467	MicroRNA regulation of human protein protein interaction network
Q34794616	MicroRNA-Gene Expression Network in Murine Liver during Schistosoma japonicum Infection
Q37396241	MicroRNAs regulate the chaperone network in cerebral ischemia
Q38186568	MicroRNAs: master regulators of drug resistance, stemness, and metastasis.
Q33910486	Microarray analysis and scale-free gene networks identify candidate regulators in drought-stressed roots of loblolly pine (P. taeda L.).
Q35874428	Microarray analysis of Long non-coding RNA expression profiles in human gastric cells and tissues with Helicobacter pylori Infection
Q38468602	Microarray analysis of long non-coding RNAs in COPD lung tissue.
Q53641268	Microarray and Co-expression Network Analysis of Genes Associated with Acute Doxorubicin Cardiomyopathy in Mice
Q35133711	Microarray profiling and co-expression network analysis of circulating lncRNAs and mRNAs associated with major depressive disorder
Q82078450	Microarrays, databases and hard, hard sums
Q34725546	Microbial community responses to anthropogenically induced environmental change: towards a systems approach
Q34266951	Microbial ecology of expanding oxygen minimum zones
Q38055376	Microbial evolution in vivo and in silico: methods and applications.
Q90069259	Minimal intervening control of biomolecular networks leading to a desired cellular state
Q37319389	Mining Functional Gene Modules Linked with Rheumatoid Arthritis Using a SNP-SNP Network
Q37026969	Mining Functional Modules in Heterogeneous Biological Networks Using Multiplex PageRank Approach
Q55027456	Mining Hierarchies and Similarity Clusters from Value Set Repositories.
Q41857971	Mining large-scale response networks reveals 'topmost activities' in Mycobacterium tuberculosis infection
Q38028539	Mining protein lists from proteomics studies: applications for drug discovery
Q34017245	Mining susceptibility gene modules and disease risk genes from SNP data by combining network topological properties with support vector regression
Q35346548	Mining the modular structure of protein interaction networks
Q47765861	Mitochondrial Nanotunnels
Q27691332	Mitochondrial network energetics in the heart.
Q34612409	Mitochondrial network genes in the skeletal muscle of amyotrophic lateral sclerosis patients
Q35529929	Mitochondrial networks in cardiac myocytes reveal dynamic coupling behavior
Q59797049	Mitoproteomics: Tackling Mitochondrial Dysfunction in Human Disease
Q36088514	MoNetFamily: a web server to infer homologous modules and module–module interaction networks in vertebrates
Q44568703	Model the evolution of protein interaction network assisted with protein age
Q35690140	Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
Q92238067	Modeling Mammalian Commitment to the Neural Lineage Using Embryos and Embryonic Stem Cells
Q36938251	Modeling and analysis of retinoic acid induced differentiation of uncommitted precursor cells
Q38514734	Modeling and analyzing gene co-expression in hepatocellular carcinoma using actor-semiotic networks and centrality signatures.
Q38117207	Modeling approaches for qualitative and semi-quantitative analysis of cellular signaling networks.
Q37964723	Modeling formalisms in Systems Biology
Q37665545	Modeling of signaling crosstalk-mediated drug resistance and its implications on drug combination
Q46249708	Modeling of the jasmonate signaling pathway in Arabidopsis thaliana with respect to pathophysiology of Alternaria blight in Brassica
Q30838604	Modeling protein network evolution under genome duplication and domain shuffling
Q33466741	Modeling the impact of lesions in the human brain
Q58697291	Modelling Biological Systems with Competitive Coherence
Q37997244	Modelling cyanobacteria: from metabolism to integrative models of phototrophic growth
Q38769316	Modelling the molecular mechanisms of aging.
Q37614684	Modelling the yeast interactome
Q38378629	Modelling transcriptional regulation with a mixture of factor analyzers and variational Bayesian expectation maximization
Q35582642	Modes of interaction between individuals dominate the topologies of real world networks
Q51107478	Modular analysis of bioinformatics demonstrates a critical role for NF-κB in macrophage activation
Q30623109	Modular biological function is most effectively captured by combining molecular interaction data types
Q35906493	Modular organization in the reductive evolution of protein-protein interaction networks
Q36946554	Modular transcriptional repertoire and MicroRNA target analyses characterize genomic dysregulation in the thymus of Down syndrome infants
Q48550558	Modularity in network neuroscience and neural reuse
Q28478957	Modularity in protein complex and drug interactions reveals new polypharmacological properties
Q39784965	Modularity in the evolution of yeast protein interaction network
Q36488921	Module identification in bipartite and directed networks
Q35206184	Module organization and variance in protein-protein interaction networks.
Q30919427	Module-based association analysis for omics data with network structure
Q35161718	ModuleRole: a tool for modulization, role determination and visualization in protein-protein interaction networks
Q90631722	Molecular Mechanism of Aflatoxin-Induced Hepatocellular Carcinoma Derived from a Bioinformatics Analysis
Q30417485	Molecular architecture of the chick vestibular hair bundle
Q80400955	Molecular chaperones: the modular evolution of cellular networks
Q34344310	Molecular characterization of the evolution of phagosomes
Q30342810	Molecular dimension explored in evolution to promote proteomic complexity
Q34286409	Molecular ecological network analyses.
Q39235602	Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach.
Q37663707	Molecular networks for the study of TCM pharmacology.
Q37798843	Molecular networks in drug discovery.
Q38453820	Molecular recognition features (MoRFs) in three domains of life
Q35259519	Molecular signatures for obesity and associated disorders identified through partial least square regression models
Q27022434	Molecule mechanism of stem cells in Arabidopsis thaliana
Q38967991	Monitoring global growth of activity cliff information over time and assessing activity cliff frequencies and distributions
Q45738967	Monochromaticity in neutral evolutionary network models
Q28727518	Motif Participation by Genes in E. coli Transcriptional Networks
Q36021345	Moving toward a system genetics view of disease
Q38703616	Multi-Level Integration of Environmentally Perturbed Internal Phenotypes Reveals Key Points of Connectivity between Them
Q26741086	Multi-OMICs and Genome Editing Perspectives on Liver Cancer Signaling Networks
Q64262874	Multi-Phenotype Association Decomposition: Unraveling Complex Gene-Phenotype Relationships
Q34504840	Multi-level modeling of light-induced stomatal opening offers new insights into its regulation by drought
Q30831814	Multi-resolution community detection in massive networks
Q64060933	Multi-scale detection of hierarchical community architecture in structural and functional brain networks
Q36555600	Multi-tissue transcriptomics for construction of a comprehensive gene resource for the terrestrial snail Theba pisana
Q56601140	Multilayer Stochastic Block Models Reveal the Multilayer Structure of Complex Networks
Q40206494	Multiple protein-protein interactions converging on the Prp38 protein during activation of the human spliceosome
Q36048325	Multiple-Localization and Hub Proteins
Q35855670	Multiscale Embedded Gene Co-expression Network Analysis
Q35651919	Multiscale analysis of the murine intestine for modeling human diseases.
Q35613489	Multiscale characterization of ageing and cancer progression by a novel network entropy measure.
Q92973305	Multiscale network analysis reveals molecular mechanisms and key regulators of the tumor microenvironment in gastric cancer
Q47439353	Mutations and lethality in simulated prebiotic networks
Q56601146	MuxViz: a tool for multilayer analysis and visualization of networks
Q92967141	NAPAbench 2: A network synthesis algorithm for generating realistic protein-protein interaction (PPI) network families
Q33509201	NATbox: a network analysis toolbox in R
Q36329404	NEArender: an R package for functional interpretation of 'omics' data via network enrichment analysis
Q50786022	NETBAGs: a network-based clustering approach with gene signatures for cancer subtyping analysis
Q42644858	NETWORKS, BIOLOGY AND SYSTEMS ENGINEERING: A CASE STUDY IN INFLAMMATION.
Q37973257	NEW: network-enabled wisdom in biology, medicine, and health care
Q37661394	NFP: An R Package for Characterizing and Comparing of Annotated Biological Networks.
Q24338837	NIRF constitutes a nodal point in the cell cycle network and is a candidate tumor suppressor
Q26851503	NIRF/UHRF2 occupies a central position in the cell cycle network and allows coupling with the epigenetic landscape
Q33806779	NL MIND-BEST: a web server for ligands and proteins discovery--theoretic-experimental study of proteins of Giardia lamblia and new compounds active against Plasmodium falciparum
Q38502454	NOA: a novel Network Ontology Analysis method
Q59264397	Nanoarchitectonics for Dynamic Functional Materials from Atomic-/Molecular-Level Manipulation to Macroscopic Action
Q37167333	Nanocarriers as pulmonary drug delivery systems to treat and to diagnose respiratory and non respiratory diseases
Q34402729	Natural selection canalizes expression variation of environmentally induced plasticity-enabling genes
Q33384901	Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans
Q30658089	Navigable networks as Nash equilibria of navigation games
Q92814841	Nervous-Like Circuits in the Ribosome Facts, Hypotheses and Perspectives
Q58771042	Net-Net Auto Machine Learning (AutoML) Prediction of Complex Ecosystems
Q41788133	NetAligner--a network alignment server to compare complexes, pathways and whole interactomes.
Q30831033	NetBioV: an R package for visualizing large network data in biology and medicine
Q30651949	NetGestalt: integrating multidimensional omics data over biological networks
Q35919208	Netter: re-ranking gene network inference predictions using structural network properties
Q33631628	Network Analysis Reveals A Signaling Regulatory Loop in the PIK3CA-mutated Breast Cancer Predicting Survival Outcome
Q61806581	Network Analysis Reveals TNF as a Major Hub of Reactive Inflammation Following Spinal Cord Injury
Q59137591	Network Analysis of Autopsy Diagnoses: Insights into the "Cause of Death" from Unbiased Disease Clustering
Q34427893	Network Analysis of Cancer-focused Association Network Reveals Distinct Network Association Patterns
Q37486684	Network Analysis-Based Approach for Exploring the Potential Diagnostic Biomarkers of Acute Myocardial Infarction
Q35930940	Network Comparison of Inflammation in Colorectal Cancer and Alzheimer's Disease
Q39802049	Network Connectance Analysis as a Tool to Understand Homeostasis of Plants under Environmental Changes.
Q90282340	Network Dynamics of a Financial Ecosystem
Q38258734	Network Medicine: New Paradigm in the -Omics Era.
Q48016228	Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology
Q64235548	Network Pharmacology Analysis of in Gene-Phenotype
Q38093187	Network Pharmacology Strategies Toward Multi-Target Anticancer Therapies: From Computational Models to Experimental Design Principles
Q89909025	Network Pharmacology-Based Investigation of the System-Level Molecular Mechanisms of the Hematopoietic Activity of Samul-Tang, a Traditional Korean Herbal Formula
Q89944347	Network Properties of Cancer Prognostic Gene Signatures in the Human Protein Interactome
Q35831985	Network Science Based Quantification of Resilience Demonstrated on the Indian Railways Network
Q33884961	Network Structure Explains the Impact of Attitudes on Voting Decisions.
Q31148972	Network Tools for the Analysis of Proteomic Data
Q35756027	Network Topologies Decoding Cervical Cancer.
Q57714395	Network Visualization Tools to Enhance Metabolic Engineering Platforms
Q38430339	Network analyses elucidate the role of SMYD3 in esophageal squamous cell carcinoma
Q89668935	Network analyses in microbiome based on high-throughput multi-omics data
Q38447168	Network analysis and cross species comparison of protein-protein interaction networks of human, mouse and rat cytochrome P450 proteins that degrade xenobiotics.
Q43926347	Network analysis and medicine: a new perspective
Q36439449	Network analysis in the identification of special mechanisms between small cell lung cancer and non-small cell lung cancer
Q43171670	Network analysis of cell adhesion: Adhesomes as context-defined subnetworks
Q34222630	Network analysis of epidermal growth factor signaling using integrated genomic, proteomic and phosphorylation data
Q33442021	Network analysis of human glaucomatous optic nerve head astrocytes.
Q92138355	Network analysis of hyphae forming proteins in Candida albicans identifies important proteins responsible for pathovirulence in the organism
Q35148920	Network analysis of inflammatory genes and their transcriptional regulators in coronary artery disease
Q36833030	Network analysis of protein dynamics
Q35721283	Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets
Q30587114	Network analysis of time-lapse microscopy recordings.
Q37336978	Network analysis of transcriptomics expands regulatory landscapes in Synechococcus sp. PCC 7002.
Q58580378	Network and Pathway Analysis of Toxicogenomics Data
Q48184416	Network and Pathway-Based Analyses of Genes Associated with Parkinson's Disease.
Q53075574	Network approach of the conformational change of c-Src, a tyrosine kinase, by molecular dynamics simulation
Q38058888	Network approaches to drug discovery
Q33789015	Network based analyses of gene expression profile of LCN2 overexpression in esophageal squamous cell carcinoma
Q35065347	Network based elucidation of drug response: from modulators to targets
Q36490625	Network biology approach for identifying key regulatory genes by expression based study of breast cancer
Q29091067	Network biology concepts in complex disease comorbidities
Q44744988	Network biology: a direct approach to study biological function
Q26824601	Network biomarkers reveal dysfunctional gene regulations during disease progression
Q35875133	Network construction and structure detection with metagenomic count data
Q41109932	Network cosmology
Q28750250	Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees
Q38947447	Network dynamics: quantitative analysis of complex behavior in metabolism, organelles, and cells, from experiments to models and back.
Q30010152	Network evolution: rewiring and signatures of conservation in signaling
Q30662482	Network fingerprint: a knowledge-based characterization of biomedical networks
Q38268011	Network for activation of human endothelial cells by oxidized phospholipids: a critical role of heme oxygenase 1.
Q90273373	Network hub-node prioritization of gene regulation with intra-network association
Q33533378	Network inference and network response identification: moving genome-scale data to the next level of biological discovery
Q31099886	Network inference via adaptive optimal design
Q53556135	Network inference, analysis, and modeling in systems biology
Q37086243	Network link prediction by global silencing of indirect correlations
Q29547462	Network medicine: a network-based approach to human disease
Q38028792	Network medicine: linking disorders.
Q42579166	Network model of a protein globule
Q33549710	Network modeling identifies molecular functions targeted by miR-204 to suppress head and neck tumor metastasis
Q38758244	Network models of DSM-5 posttraumatic stress disorder: Implications for ICD-11.
Q34198065	Network motif comparison rationalizes Sec1/Munc18-SNARE regulation mechanism in exocytosis
Q34686929	Network motif identification in stochastic networks
Q42372160	Network motifs modulate druggability of cellular targets
Q36747153	Network motifs provide signatures that characterize metabolism
Q38213437	Network motifs that recur across species, including gene regulatory and protein-protein interaction networks.
Q33837327	Network neuroscience
Q57932497	Network pharmacology
Q87957917	Network pharmacology-based prediction and verification of the molecular targets and pathways for schisandrin against cerebrovascular disease
Q28297997	Network pharmacology: the next paradigm in drug discovery
Q38728685	Network propagation: a universal amplifier of genetic associations
Q35118812	Network representations of immune system complexity
Q58744967	Network resilience of mutualistic ecosystems and environmental changes: an empirical study
Q33662157	Network science meets respiratory medicine for OSAS phenotyping and severity prediction
Q44248640	Network simulation reveals significant contribution of network motifs to the age-dependency of yeast protein-protein interaction networks
Q60301502	Network spectra for drug-target identification in complex diseases: new guns against old foes
Q35692548	Network succession reveals the importance of competition in response to emulsified vegetable oil amendment for uranium bioremediation
Q33592795	Network systems biology for drug discovery
Q37183677	Network systems biology for targeted cancer therapies
Q24628450	Network, degeneracy and bow tie. Integrating paradigms and architectures to grasp the complexity of the immune system
Q34335485	Network-Assisted Investigation of Combined Causal Signals from Genome-Wide Association Studies in Schizophrenia
Q47562711	Network-Based Methods for Identifying Key Active Proteins in the Extracellular Electron Transfer Process in Shewanella oneidensis MR-1.
Q38991241	Network-Guided Key Gene Discovery for a Given Cellular Process
Q39221886	Network-Oriented Approaches to Anticancer Drug Response
Q33494813	Network-assisted protein identification and data interpretation in shotgun proteomics
Q37987552	Network-based analysis of complex diseases
Q34064935	Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network
Q102210995	Network-based approach highlighting interplay among anti-hypertensives: target coding-genes: diseases
Q97542425	Network-based characterization of disease-disease relationships in terms of drugs and therapeutic targets
Q38089597	Network-based drug repositioning
Q54511368	Network-based identification of novel connections among apoptotic signaling pathways in cancer.
Q61811426	Network-based microsynteny analysis identifies major differences and genomic outliers in mammalian and angiosperm genomes
Q41981538	Network-based model weighting to detect multiple loci influencing complex diseases
Q64099168	Network-based prediction of drug combinations
Q33906061	Network-based scoring system for genome-scale metabolic reconstructions
Q37012936	Network-centered view of coronary artery disease
Q37995591	Network-centric Analysis of Genetic Predisposition in Diabetic Nephropathy
Q36174760	Networking Omic Data to Envisage Systems Biological Regulation
Q34078887	Networking the nucleus.
Q33575787	Networks inferred from biochemical data reveal profound differences in toll-like receptor and inflammatory signaling between normal and transformed hepatocytes
Q38914293	Networks of ProteinProtein Interactions: From Uncertainty to Molecular Details.
Q36197502	Networks' Characteristics Matter for Systems Biology
Q43836810	Network‐Assisted Investigation of Antipsychotic Drugs and Their Targets
Q30539060	Neural progenitors organize in small-world networks to promote cell proliferation
Q42035978	Neuron-Like Networks Between Ribosomal Proteins Within the Ribosome
Q38431028	Neuron-autonomous transcriptome changes upon ischemia/reperfusion injury
Q37913725	Neuronal homeostasis: time for a change?
Q22337243	Neuroscience in the era of functional genomics and systems biology
Q41917108	Neutral fitness landscapes in signalling networks.
Q40512548	New Measurement for Correlation of Co-evolution Relationship of Subsequences in Protein
Q64065417	New Statistical Methods for Constructing Robust Differential Correlation Networks to characterize the interactions among microRNAs
Q46933685	New approaches to the problem of generating coherent, reproducible phenotypes
Q36111854	New genes drive the evolution of gene interaction networks in the human and mouse genomes
Q38048394	New horizons for antiviral drug discovery from virus–host protein interaction networks
Q38127847	New insights into the role of aminopeptidases in the treatment for both preeclampsia and preterm labor
Q41462597	New measurement for correlation of co-evolution relationship of subsequences in protein
Q39010533	Next generation of network medicine: interdisciplinary signaling approaches
Q41969112	Node interference and robustness: performing virtual knock-out experiments on biological networks: the case of leukocyte integrin activation network
Q46693012	Noise-induced dynamics in the mixed-feedback-loop network motif
Q41957138	Noise-processing by signaling networks.
Q34505131	Non Linear Programming (NLP) formulation for quantitative modeling of protein signal transduction pathways
Q38093792	Non-catalytic Regulation of Gene Expression by Aminoacyl-tRNA Synthetases
Q38131610	Non-classical effects of estradiol on cAMP responsive element binding protein phosphorylation in gonadotropin-releasing hormone neurons: mechanisms and role
Q49689803	Non-coding RNA networks in cancer.
Q33321230	Non-uniform survival rate of heterodimerization links in the evolution of the yeast protein-protein interaction network
Q38549710	Nonlinear response of gene expression to chemical perturbations: A noise-detector model and its predictions
Q46203694	Nonlinear signaling on biological networks: The role of stochasticity and spectral clustering
Q38967649	NorWood: a gene expression resource for evo-devo studies of conifer wood development
Q58613658	Norepinephrine triggers an immediate-early regulatory network response in primary human white adipocytes
Q37792416	Novel Therapies in Childhood Heart Failure: Today and Tomorrow
Q52674242	Novel candidate genes important for asthma and hypertension comorbidity revealed from associative gene networks
Q34471686	Novel distal eQTL analysis demonstrates effect of population genetic architecture on detecting and interpreting associations
Q42116852	Novel integrative genomics strategies to identify genes for complex traits
Q38947391	Nuclear factor of activated T-cell activity is associated with metastatic capacity in colon cancer
Q34481984	Nucleolar protein trafficking in response to HIV-1 Tat: rewiring the nucleolus
Q27317339	Nutritional programming in the rat is linked to long-lasting changes in nutrient sensing and energy homeostasis in the hypothalamus
Q92420186	ORVAL: a novel platform for the prediction and exploration of disease-causing oligogenic variant combinations
Q36772158	Obg-like ATPase 1 regulates global protein serine/threonine phosphorylation in cancer cells by suppressing the GSK3β-inhibitor 2-PP1 positive feedback loop
Q44266505	Observing local and global properties of metabolic pathways: 'load points' and 'choke points' in the metabolic networks
Q34342869	On Mind Wandering, Attention, Brain Networks, and Meditation
Q58886458	On Terrain Coverage Optimization by Using a Network Approach for Universal Graph-Based Data Mining and Knowledge Discovery
Q35102169	On control of singleton attractors in multiple Boolean networks: integer programming-based method
Q58921609	On the Distributions of Subgraph Centralities in Complex Networks
Q33833202	On the architecture of cell regulation networks.
Q38067023	On the binding affinity of macromolecular interactions: daring to ask why proteins interact
Q34495436	On the contributions of topological features to transcriptional regulatory network robustness
Q83265557	On the discordance of metabolomics with proteomics and transcriptomics: coping with increasing complexity in logic, chemistry, and network interactions scientific correspondence
Q35671030	Oncogenes and tumor suppressor genes: comparative genomics and network perspectives
Q36359378	Online fluorescence anisotropy immunoassay for monitoring insulin secretion from islets of Langerhans
Q37438869	Ontological Discovery Environment: a system for integrating gene-phenotype associations.
Q27687756	Open source libraries and frameworks for biological data visualisation: a guide for developers
Q54343613	Optimal Number of Coarse-Grained Sites in Different Components of Large Biomolecular Complexes
Q88232455	Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error
Q51657531	Optimal network configuration for maximal coherence resonance in excitable systems
Q48340589	Optimization of random searches on defective lattice networks.
Q47806408	Optimization of synchronization in complex clustered networks
Q37236870	Optimizing a global alignment of protein interaction networks
Q55306139	Optimizing miRNA-module diagnostic biomarkers of gastric carcinoma via integrated network analysis.
Q33372128	Organization of excitable dynamics in hierarchical biological networks
Q33379070	Organization of physical interactomes as uncovered by network schemas
Q34268289	Organizational structure and the periphery of the gene regulatory network in B-cell lymphoma
Q33371104	Origin of structural difference in metabolic networks with respect to temperature
Q35209055	Origins of stochasticity and burstiness in high-dimensional biochemical networks
Q48300037	Orthogonal Operation of Constitutional Dynamic Networks Consisting of DNA-Tweezer Machines.
Q36512144	Overlapping signatures of chronic pain in the DNA methylation landscape of prefrontal cortex and peripheral T cells
Q51087190	Overlapping-box-covering method for the fractal dimension of complex networks
Q37824518	P4 medicine: the future around the corner
Q35687105	PAND: A Distribution to Identify Functional Linkage from Networks with Preferential Attachment Property
Q89624590	PANDA: Prioritization of autism-genes using network-based deep-learning approach
Q93367579	PD-linked CHCHD2 mutations impair CHCHD10 and MICOS complex leading to mitochondria dysfunction
Q97542267	PEDL: extracting protein-protein associations using deep language models and distant supervision
Q33504185	PINAT1.0: protein interaction network analysis tool
Q55395928	PPI network analyses of human WD40 protein family systematically reveal their tendency to assemble complexes and facilitate the complex predictions.
Q34003617	PPI network analysis of mRNA expression profile of ezrin knockdown in esophageal squamous cell carcinoma
Q92830452	PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components
Q34370851	PTK2 rs7460 and rs7843014 polymorphisms and exceptional longevity: a functional replication study.
Q34433518	PTPepsilon has a critical role in signaling transduction pathways and phosphoprotein network topology in red cells
Q59350372	Packaging of the influenza A virus genome is governed by a plastic network of RNA/protein interactions
Q51583649	Packet traffic analysis of scale-free networks for large-scale network-on-chip design
Q90130326	Pan-cancer analysis of the metabolic reaction network
Q33884435	Paradigm of Time-sequence Development of the Intestine of Suckling Piglets with Microarray
Q24320208	Parallel visualization of multiple protein complexes in individual cells in tumor tissue
Q35115335	Parcellating connectivity in spatial maps
Q33682324	Parenclitic networks: uncovering new functions in biological data.
Q37405094	Partial Correlation Estimation by Joint Sparse Regression Models
Q41578981	PathPPI: an integrated dataset of human pathways and protein-protein interactions
Q49332587	Pathogenesis of thrombosis: cellular and pharmacogenetic contributions
Q37748077	Pathogenic mechanisms of allergic inflammation: atopic asthma as a paradigm
Q37322831	Pathway Analysis Based on Attractor and Cross Talk in Colon Cancer.
Q26770725	Pathway Analysis: State of the Art
Q41688254	Pathway Interaction Network Analysis Identifies Dysregulated Pathways in Human Monocytes Infected by Listeria monocytogenes.
Q38520286	Pathway analysis of coronary atherosclerosis
Q34620460	Pathway and network analysis in proteomics
Q60919118	Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone
Q51369560	Pathway detection from protein interaction networks and gene expression data using color-coding methods and A∗ search algorithms
Q30836899	Pathway network inference from gene expression data
Q42615125	Pattern discovery in breast cancer specific protein interaction network
Q92568694	Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations
Q33745661	Patterns of human gene expression variance show strong associations with signaling network hierarchy
Q38078204	Pediatric systems medicine: evaluating needs and opportunities using congenital heart block as a case study
Q35740537	Pedican: an online gene resource for pediatric cancers with literature evidence
Q42651561	Perceiving molecular evolution processes in Escherichia coli by comprehensive metabolite and gene expression profiling
Q27444469	Performance of modularity maximization in practical contexts
Q38245459	Perspective: network-guided pattern formation of neural dynamics
Q26823206	Perspectives on Systems Biology Applications in Diabetic Kidney Disease
Q34330027	Perspectives on tissue interactions in development and disease
Q28534547	Perturbation centrality and turbine: a novel centrality measure obtained using a versatile network dynamics tool
Q38099521	PheNetic: network-based interpretation of unstructured gene lists in E. coli
Q35224364	Phenotypic robustness and the assortativity signature of human transcription factor networks
Q37166324	Philosophical basis and some historical aspects of systems biology: from Hegel to Noble - applications for bioenergetic research
Q39634246	Phosphoproteome profile of human lung cancer cell line A549.
Q27333727	Phosphoproteomic analyses reveal signaling pathways that facilitate lytic gammaherpesvirus replication
Q39417313	Phosphoproteomics analyses show subnetwork systems in T-cell receptor signaling.
Q28074488	Phylogenetic Profiling for Probing the Modular Architecture of the Human Genome
Q28742134	Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2
Q36320472	Phylogeny rather than ecology or lifestyle biases the construction of Escherichia coli-Shigella genetic exchange communities.
Q36957291	Physical and in silico approaches identify DNA-PK in a Tax DNA-damage response interactome
Q33929397	Placental gene-expression profiles of intrahepatic cholestasis of pregnancy reveal involvement of multiple molecular pathways in blood vessel formation and inflammation
Q47304367	PlanNET: Homology-based predicted interactome for multiple planarian transcriptomes
Q38199642	Plant systems biology: insights, advances and challenges.
Q90348363	Plants are intelligent, here's how
Q90634750	Pleiotropy facilitates local adaptation to distant optima in common ragweed (Ambrosia artemisiifolia)
Q36958965	Pluralistic and stochastic gene regulation: examples, models and consistent theory.
Q50130397	Pollen tube vs CHUKNORRIS: the action is pulsatile
Q34319906	Polypharmacology: drug discovery for the future
Q38002254	Potential of levitated drops to serve as microreactors for biophysical measurements
Q34135998	Power Law Distribution Defines Structural Disorder as a Structural Element Directly Linked with Function
Q35526762	Power laws for heavy-tailed distributions: modeling allele and haplotype diversity for the national marrow donor program
Q90560528	Precision medicine - networks to the rescue
Q26780232	Precision medicine for cancer with next-generation functional diagnostics
Q36898747	Predict, prevent and personalize: Genomic and proteomic approaches to cardiovascular medicine
Q55501160	Predicting Potential Drugs for Breast Cancer based on miRNA and Tissue Specificity.
Q33636070	Predicting Type 1 Diabetes Candidate Genes using Human Protein-Protein Interaction Networks
Q35671381	Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments
Q33354928	Predicting and validating protein interactions using network structure
Q30481763	Predicting cancer involvement of genes from heterogeneous data
Q33494562	Predicting cell cycle regulated genes by causal interactions
Q38474935	Predicting disease-related proteins based on clique backbone in protein-protein interaction network
Q41955178	Predicting effects of structural stress in a genome-reduced model bacterial metabolism
Q90135314	Predicting gene regulatory interactions based on spatial gene expression data and deep learning
Q33536463	Predicting highly-connected hubs in protein interaction networks by QSAR and biological data descriptors.
Q58721000	Predicting overlapping protein complexes based on core-attachment and a local modularity structure
Q89169771	Predicting perturbation patterns from the topology of biological networks
Q33528271	Predicting protein functions by relaxation labelling protein interaction network
Q34750436	Predicting synthetic rescues in metabolic networks
Q36853573	Predicting the Drug Safety for Traditional Chinese Medicine through a Comparative Analysis of Withdrawn Drugs Using Pharmacological Network
Q34196685	Predicting the lethal phenotype of the knockout mouse by integrating comprehensive genomic data
Q45710784	Prediction and Validation of Hub Genes Associated with Colorectal Cancer by Integrating PPI Network and Gene Expression Data.
Q35837549	Prediction and characterization of protein-protein interaction networks in swine
Q28084302	Prediction of Genetic Interactions Using Machine Learning and Network Properties
Q30775431	Prediction of Growth Factor-Dependent Cleft Formation During Branching Morphogenesis Using A Dynamic Graph-Based Growth Model
Q34235644	Prediction of Phenotype-Associated Genes via a Cellular Network Approach: A Candida albicans Infection Case Study
Q33686676	Prediction of a gene regulatory network linked to prostate cancer from gene expression, microRNA and clinical data
Q27676831	Prediction of function for the polyprenyl transferase subgroup in the isoprenoid synthase superfamily
Q33325895	Prediction of human disease genes by human-mouse conserved coexpression analysis
Q58853523	Prediction of human-Bacillus anthracis protein–protein interactions using multi-layer neural network
Q37226894	Prediction of protein essentiality by the support vector machine with statistical tests
Q37436174	Prediction of substrate-enzyme-product interaction based on molecular descriptors and physicochemical properties
Q36363362	Prediction of the anti-inflammatory mechanisms of curcumin by module-based protein interaction network analysis
Q35875313	Prediction of tissue-specific effects of gene knockout on apoptosis in different anatomical structures of human brain.
Q33241224	Prediction of yeast protein-protein interaction network: insights from the Gene Ontology and annotations
Q28477085	Predictive Power Estimation Algorithm (PPEA)--a new algorithm to reduce overfitting for genomic biomarker discovery
Q34398474	Predictive association of copper metabolism proteins with Alzheimer's disease and Parkinson's disease: a preliminary perspective
Q34509982	Predictive diagnostics and personalized medicine for the prevention of chronic degenerative diseases
Q27028227	Predictive modelling of complex agronomic and biological systems
Q24813122	Preferential attachment in the evolution of metabolic networks
Q33904808	Preferential regulation of miRNA targets by environmental chemicals in the human genome
Q37823773	Prenatal, Early Life, and Childhood Exposure to Genotoxicants in the Living Environment
Q44737194	Preparation and Characterization of Enzyme Compartments in UV-Cured Polyurethane-Based Materials and Their Application in Enzymatic Reactions.
Q36315350	Preservation affinity in consensus modules among stages of HIV-1 progression
Q33567049	Prestige centrality-based functional outlier detection in gene expression analysis
Q90633439	Preterm infants with isolated cerebellar hemorrhage show bilateral cortical alterations at term equivalent age
Q36691069	Principles of dynamical modularity in biological regulatory networks.
Q35193525	Principles of microRNA regulation of a human cellular signaling network
Q36329475	Prior knowledge guided active modules identification: an integrated multi-objective approach
Q44832690	Prioritization of Therapeutic Targets of Inflammation Using Proteomics, Bioinformatics, and In Silico Cell–Cell Interactomics
Q33593578	Prioritization of disease microRNAs through a human phenome-microRNAome network
Q33315715	Prioritization of gene regulatory interactions from large-scale modules in yeast
Q34045429	Prioritizing cancer-related genes with aberrant methylation based on a weighted protein-protein interaction network
Q34173421	Prioritizing disease candidate genes by a gene interconnectedness-based approach
Q30486113	Prioritizing functional modules mediating genetic perturbations and their phenotypic effects: a global strategy
Q27337213	Probing the extent of randomness in protein interaction networks
Q28649341	Probing the topological properties of complex networks modeling short written texts
Q34289909	Profiling human protein degradome delineates cellular responses to proteasomal inhibition and reveals a feedback mechanism in regulating proteasome homeostasis
Q35792720	Profiling of circulating microRNAs: from single biomarkers to re-wired networks
Q33715750	Prognostic Biomarker Identification Through Integrating the Gene Signatures of Hepatocellular Carcinoma Properties
Q37433431	Prognostic Value of Plasma and Urine Glycosaminoglycan Scores in Clear Cell Renal Cell Carcinoma
Q42140251	Prognostic interaction patterns in diabetes mellitus II: A random-matrix-theory relation
Q42703264	Programming an in vitro DNA oscillator using a molecular networking strategy.
Q34981003	Progressive glucose stimulation of islet beta cells reveals a transition from segregated to integrated modular functional connectivity patterns.
Q27315629	Projections from neocortex mediate top-down control of memory retrieval
Q26851625	Prokaryotic genome regulation: A revolutionary paradigm
Q37759083	Prokaryotic genome regulation: multifactor promoters, multitarget regulators and hierarchic networks
Q42508525	Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach
Q38132466	Promiscuity as a functional trait: intrinsically disordered regions as central players of interactomes
Q24799034	Promiscuous drugs compared to selective drugs (promiscuity can be a virtue)
Q47318712	Promoting cooperation by preventing exploitation: The role of network structure
Q36386280	Properties of genes essential for mouse development
Q40313697	Properties of metabolic networks: structure versus function
Q38287189	Properties of networks with partially structured and partially random connectivity
Q35085938	Proteasome inhibitor patents (2010 - present).
Q34712428	Protein Complex Detection via Weighted Ensemble Clustering Based on Bayesian Nonnegative Matrix Factorization
Q34145495	Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model
Q57747933	Protein Interaction Networks and Their Statistical Analysis
Q36914675	Protein co-evolution, co-adaptation and interactions
Q39676120	Protein complex detection with semi-supervised learning in protein interaction networks
Q37283301	Protein complex identification by supervised graph local clustering
Q28286322	Protein complex-based analysis framework for high-throughput data sets
Q34189209	Protein evolution in yeast transcription factor subnetworks
Q31108958	Protein interaction network of Arabidopsis thaliana female gametophyte development identifies novel proteins and relations
Q42125611	Protein interaction network related to Helicobacter pylori infection response
Q37515557	Protein interaction networks as metric spaces: a novel perspective on distribution of hubs
Q38010662	Protein interaction networks in medicine and disease
Q36436811	Protein interaction networks in plants
Q33529039	Protein interaction networks--more than mere modules
Q37158704	Protein interaction predictions from diverse sources
Q42876601	Protein interactions from complexes: a structural perspective
Q36403382	Protein linguistics - a grammar for modular protein assembly?
Q38124834	Protein nanomachines assembly modes: cell-free expression and biochip perspectives
Q33704536	Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection
Q37125547	Protein networks in disease
Q30382732	Protein structural robustness to mutations: an in silico investigation.
Q38598817	Protein-Protein Interactions in Virus-Host Systems.
Q53631904	Protein-complex structure completion using IPCAS (Iterative Protein Crystal structure Automatic Solution).
Q87988033	Protein-protein interaction network of the marine microalga Tetraselmis subcordiformis: prediction and application for starch metabolism analysis
Q38272993	Protein-protein interaction networks (PPI) and complex diseases.
Q51897141	Protein-protein interaction networks and biology--what's the connection?
Q37791993	Protein-protein interaction networks and subnetworks in the biology of disease
Q34237349	Protein-protein interaction networks suggest different targets have different propensities for triggering drug resistance
Q38217249	Protein-protein interactions and genetic diseases: The interactome
Q30002405	Protein-protein interactions: analysis and prediction
Q34958339	Proteins and an Inflammatory Network Expressed in Colon Tumors
Q35775566	Proteins interaction network and modeling of IGVH mutational status in chronic lymphocytic leukemia
Q30834140	Proteome Profiling Outperforms Transcriptome Profiling for Coexpression Based Gene Function Prediction
Q34315933	Proteome-wide prediction of protein-protein interactions from high-throughput data
Q34002499	Proteome-wide remodeling of protein location and function by stress
Q37772795	Proteomic analyses lead to a better understanding of celiac disease: focus on epitope recognition and autoantibodies.
Q37866311	Proteomic investigations of the synaptic vesicle interactome
Q37345465	Proteomic profiling of KATP channel-deficient hypertensive heart maps risk for maladaptive cardiomyopathic outcome
Q36673320	Proteomics analysis unravels the functional repertoire of coronavirus nonstructural protein 3.
Q36375181	Proteomics and bioinformatics analysis of mouse hypothalamic neurogenesis with or without EPHX2 gene deletion
Q38266035	Proteomics for systems toxicology
Q52593405	Putative human sperm Interactome: a networks study
Q51556612	PyBioMed: a python library for various molecular representations of chemicals, proteins and DNAs and their interactions.
Q34628600	Quantifiable diagnosis of muscular dystrophies and neurogenic atrophies through network analysis.
Q34486361	Quantification of biological network perturbations for mechanistic insight and diagnostics using two-layer causal models
Q37418089	Quantification of spatial parameters in 3D cellular constructs using graph theory
Q33917439	Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes.
Q27310562	Quantifying the dynamics of coupled networks of switches and oscillators
Q34205663	Quantitative Analysis of Cellular Metabolic Dissipative, Self-Organized Structures
Q56795164	Quantitative Characterization of Protein Networks of the Oral Cavity
Q28083248	Quantitative and logic modelling of molecular and gene networks
Q90362236	Quantitative and qualitative role of antagonistic heterogeneity in genetics of blood lipids
Q36337206	Quantitative evaluation and reversion analysis of the attractor landscapes of an intracellular regulatory network for colorectal cancer
Q35105693	Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli
Q27902294	Quantitative modeling of dose–response and drug combination based on pathway network
Q57772685	Quantum Google algorithm
Q41819716	Quantum Google in a complex network
Q36686425	REGene: a literature-based knowledgebase of animal regeneration that bridge tissue regeneration and cancer.
Q47580798	RESQUE: Network reduction using semi-Markov random walk scores for efficient querying of biological networks
Q46006907	RISE: a database of RNA interactome from sequencing experiments.
Q34711458	RNA-Seq reveals novel transcriptional reorganization in human alcoholic brain.
Q34591240	RRAS: A key regulator and an important prognostic biomarker in biliary atresia
Q34472145	Random phenotypic variation of yeast (Saccharomyces cerevisiae) single-gene knockouts fits a double pareto-lognormal distribution
Q28479041	Randomizing Genome-Scale Metabolic Networks
Q38103508	Randomness and multilevel interactions in biology
Q37733223	Randomness and preserved patterns in cancer network
Q33317651	Rank-based edge reconstruction for scale-free genetic regulatory networks
Q25255742	Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network
Q48330341	Rapidly induced gene networks following induction of long-term potentiation at perforant path synapses in vivo
Q33751206	Ray Meta: scalable de novo metagenome assembly and profiling.
Q35660217	Re-Examining of Moffitt's Theory of Delinquency through Agent Based Modeling.
Q31025313	Re-analysis of protein data reveals the germination pathway and up accumulation mechanism of cell wall hydrolases during the radicle protrusion step of seed germination in Podophyllum hexandrum- a high altitude plant
Q30479567	Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures
Q35047516	Recent coselection in human populations revealed by protein-protein interaction network
Q37219400	Recent developments in parameter estimation and structure identification of biochemical and genomic systems
Q47629638	Reconstructing complex networks without time series
Q38305740	Reconstructing dynamic regulatory maps
Q34989529	Reconstructing genome-wide protein-protein interaction networks using multiple strategies with homologous mapping.
Q33444240	Reconstructing prokaryotic transcriptional regulatory networks: lessons from actinobacteria
Q47845500	Reconstructing the structure of directed and weighted networks of nonlinear oscillators
Q33424086	Reconstructing the ubiquitin network: cross-talk with other systems and identification of novel functions
Q28077351	Reconstruction and Application of Protein-Protein Interaction Network
Q30874878	Reconstruction and analysis of correlation networks based on GC-MS metabolomics data for young hypertensive men.
Q33321324	Reconstruction and analysis of the genetic and metabolic regulatory networks of the central metabolism of Bacillus subtilis
Q38503816	Reconstruction of Protein-Protein Interaction Network of Insulin Signaling inHomo Sapiens
Q38518470	Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
Q29616018	Reconstruction of biochemical networks in microorganisms
Q48052254	Reconstruction of metabolic network in the bovine mammary gland tissue
Q37712930	Reconstruction of noise-driven nonlinear networks from node outputs by using high-order correlations
Q31126762	Reconstruction of the Fatty Acid Biosynthetic Pathway of Exiguobacterium antarcticum B7 Based on Genomic and Bibliomic Data
Q35006921	Reconstruction of the experimentally supported human protein interactome: what can we learn?
Q37270376	Reducing the complexity of complex gene coexpression networks by coupling multiweighted labeling with topological analysis
Q33242288	Reduction/oxidation-phosphorylation control of DNA binding in the bZIP dimerization network
Q36266998	Reengineering the pharmaceutical industry by crash-testing molecules
Q92237173	Refining modules to determine functionally significant clusters in molecular networks
Q42262951	Refining transcriptional regulatory networks using network evolutionary models and gene histories
Q51914755	Regularizing capacity of metabolic networks
Q37348683	Regulation by transcription factors in bacteria: beyond description
Q54980677	Regulation of Cell-to-Cell Communication and Cell Wall Integrity by a Network of MAP Kinase Pathways and Transcription Factors in Neurospora crassa.
Q33277970	Regulation of metabolic networks by small molecule metabolites
Q33756698	Regulation patterns in signaling networks of cancer
Q34133098	Regulatory interactions for iron homeostasis in Aspergillus fumigatus inferred by a Systems Biology approach
Q53751456	Regulatory network analysis of microRNAs and genes in imatinib-resistant chronic myeloid leukemia
Q27004898	Regulatory network features in Listeria monocytogenes-changing the way we talk
Q36434726	RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond.
Q34029639	Relationship between gene duplicability and diversifiability in the topology of biochemical networks
Q33289249	Relationship between insertion/deletion (indel) frequency of proteins and essentiality
Q33946537	Relative contractile motion of the rings in a switchable palindromic [3]rotaxane in aqueous solution driven by radical-pairing interactions
Q41036297	Relevance of different prior knowledge sources for inferring gene interaction networks
Q34067225	Reproducible combinatorial regulatory networks elucidate novel oncogenic microRNAs in non-small cell lung cancer
Q37352085	Research prioritization through prediction of future impact on biomedical science: a position paper on inference-analytics
Q39286296	Resilience of protein–protein interaction networks as determined by their large-scale topological features
Q28079922	Respiratory viral infections and host responses; insights from genomics
Q58548299	Resurrected Protein Interaction Networks Reveal the Innovation Potential of Ancient Whole Genome Duplication
Q34582221	Retinal transcriptome profiling at transcription start sites: a cap analysis of gene expression early after axonal injury.
Q38657848	Retinoic acid-induced upregulation of miR-219 promotes the differentiation of embryonic stem cells into neural cells
Q31120753	Revealing complex function, process and pathway interactions with high-throughput expression and biological annotation data.
Q50147074	Revealing long-range interconnected hubs in human chromatin interaction data using graph theory.
Q35110916	Revealing missing parts of the interactome via link prediction
Q45955202	Revealing shared and distinct gene network organization in Arabidopsis immune responses by integrative analysis.
Q46430505	Revealing the Determinants of Widespread Alternative Splicing Perturbation in Cancer
Q34770400	Revealing the Hidden Relationship by Sparse Modules in Complex Networks with a Large-Scale Analysis
Q34439294	Revealing the molecular relationship between type 2 diabetes and the metabolic changes induced by a very-low-carbohydrate low-fat ketogenic diet
Q36668797	Reverse engineering and analysis of large genome-scale gene networks
Q41959990	Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions
Q36535197	Reverse-engineering the genetic circuitry of a cancer cell with predicted intervention in chronic lymphocytic leukemia
Q35086178	Review of biological network data and its applications
Q34427728	Review of uses of network and graph theory concepts within proteomics
Q127060165	Review on computer-assisted biosynthetic capacities elucidation to assess metabolic interactions and communication within microbial communities
Q34252899	Revisiting the variation of clustering coefficient of biological networks suggests new modular structure
Q34162330	Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution
Q37327692	Rich can get poor: conversion of hub to non-hub proteins
Q30830693	Rich-club phenomenon in the interactome of P. falciparum--artifact or signature of a parasitic life style?
Q51134435	Rigidity loss of protein macromolecule induced by force--effective field theory
Q34181304	Robust Detection of Hierarchical Communities from Escherichia coli Gene Expression Data
Q45043914	Robust classification of salient links in complex networks
Q33592328	Robustness and evolvability in natural chemical resistance: identification of novel systems properties, biochemical mechanisms and regulatory interactions
Q88932496	Robustness and evolvability of heterogeneous cell populations
Q28541382	Robustness and evolvability of the human signaling network
Q51973940	Robustness of the p53 network and biological hackers
Q36494119	Robustness trade-offs and host-microbial symbiosis in the immune system
Q24646806	Robustness: mechanisms and consequences
Q26830826	Role of physical and mental training in brain network configuration
Q35625335	Role of relaxation time scale in noisy signal transduction
Q50774314	Role of topology in complex functional networks of beta cells
Q39183945	Rotaxane-based molecular muscles
Q61458428	Rule-based modeling of biochemical networks
Q43447225	SAGPAR: structural grammar-based automated pathway reconstruction
Q58785268	SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks
Q42139072	SMETANA: Accurate and Scalable Algorithm for Probabilistic Alignment of Large-Scale Biological Networks
Q38329831	SMILE silencing and PMA activation gene networks in HeLa cells: comparison with kidney transplantation gene networks
Q37245782	SNOW, a web-based tool for the statistical analysis of protein-protein interaction networks
Q55162837	SNP-Schizo: A Web Tool for Schizophrenia SNP Sequence Classification
Q27136674	STITCH 4: integration of protein-chemical interactions with user data
Q28481579	Scale-free behaviour of amino acid pair interactions in folded proteins
Q24658445	Scale-free flow of life: on the biology, economics, and physics of the cell
Q51944428	Scale-free topologies and activatory-inhibitory interactions
Q36208392	Scale-freeness and biological networks
Q40749831	Scale-space measures for graph topology link protein network architecture to function
Q36835797	Scaling in topological properties of brain networks
Q33627540	Schizophrenia gene networks and pathways and their applications for novel candidate gene selection
Q28474246	Search algorithms as a framework for the optimization of drug combinations
Q47388572	Seasonal Changes in a Maize-Based Polyculture of Central Mexico Reshape the Co-occurrence Networks of Soil Bacterial Communities
Q33291610	Semantic integration to identify overlapping functional modules in protein interaction networks
Q36115873	Sensing your surroundings: how transcription-regulatory networks of the cell discern environmental signals
Q49819186	Sensitivity of directed networks to the addition and pruning of edges and vertices
Q92966940	Sex biased expression and co-expression networks in development, using the hymenopteran Nasonia vitripennis
Q36635944	Sexually dimorphic actions of glucocorticoids provide a link to inflammatory diseases with gender differences in prevalence
Q35176193	Shadows of complexity: what biological networks reveal about epistasis and pleiotropy
Q24311561	Shifted Transversal Design smart-pooling for high coverage interactome mapping
Q59793048	Shortest path counting in probabilistic biological networks
Q33386853	Shortest-path network analysis is a useful approach toward identifying genetic determinants of longevity
Q39614185	Sick and edgy: walk-counting as a metric of epidemic spreading on networks
Q35872107	Signal reachability facilitates characterization of probabilistic signaling networks
Q30370310	Signaling networks during development: the case of asymmetric cell division in the Drosophila nervous system.
Q30787044	Signalling entropy: A novel network-theoretical framework for systems analysis and interpretation of functional omic data.
Q36915100	Signature pathways identified from gene expression profiles in the human uterine cervix before and after spontaneous term parturition
Q92255081	Significance-based community detection in weighted networks
Q33640033	Similarity in viral and host promoters couples viral reactivation with host cell migration
Q35018008	Simple topological features reflect dynamics and modularity in protein interaction networks
Q34328058	Simulated Evolution of Protein-Protein Interaction Networks with Realistic Topology
Q33954156	Simulating systems genetics data with SysGenSIM
Q55260613	Simulation and visualization of multiple KEGG pathways using BioNSi.
Q28476223	Simultaneous genome-wide inference of physical, genetic, regulatory, and functional pathway components
Q50716381	Simultaneous identification of differential gene expression and connectivity in inflammation, adipogenesis and cancer.
Q37269440	Single live-cell imaging for systems biology.
Q56336640	Single-Gene and Whole-Genome Duplications and the Evolution of Protein-Protein Interaction Networks
Q46732557	Single-cell Co-expression Subnetwork Analysis
Q103002632	Single-cell network biology for resolving cellular heterogeneity in human diseases
Q47415566	Single-cell pluripotency regulatory networks.
Q28656017	Siri of the cell: what biology could learn from the iPhone
Q37981160	Six Degrees of Epistasis: Statistical Network Models for GWAS
Q37375137	Small but influential: the role of microRNAs on gene regulatory network and 3'UTR evolution
Q30478634	Small worlds inside big brains
Q97561863	Small-world networks of prognostic genes associated with lung adenocarcinoma development
Q39277365	Small-world networks of residue interactions in the Abl kinase complexes with cancer drugs: topology of allosteric communication pathways can determine drug resistance effects.
Q42188705	Small-world networks of spontaneous Ca(2+) activity.
Q33889128	Smaller gene networks permit longer persistence in fast-changing environments.
Q33828750	Smaller, Scale-Free Gene Networks Increase Quantitative Trait Heritability and Result in Faster Population Recovery
Q33422156	Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
Q57920836	Social network theory in the behavioural sciences: potential applications
Q34760858	Social networks in primates: smart and tolerant species have more efficient networks
Q38102918	Social networks to biological networks: systems biology of Mycobacterium tuberculosis.
Q35771584	Soil organic matter quantity and quality shape microbial community compositions of subtropical broadleaved forests.
Q40256873	Solving the inverse problem of noise-driven dynamic networks.
Q30862468	Some protein interaction data do not exhibit power law statistics
Q34461034	Soybeans grown in the Chernobyl area produce fertile seeds that have increased heavy metal resistance and modified carbon metabolism
Q37487752	Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network
Q34069487	Spatio-temporal oscillations of individual mitochondria in cardiac myocytes reveal modulation of synchronized mitochondrial clusters
Q55415831	Spatiotemporal control of DNA-based chemical reaction network via electrochemical activation in microfluidics.
Q45089664	Spatiotemporal regulation of morphogenetic molecules during in vitro branching of the isolated ureteric bud: toward a model of branching through budding in the developing kidney
Q33498644	Specialized or flexible feed-forward loop motifs: a question of topology
Q38107251	Specific‐gene studies of evolutionary mechanisms in an age of genome‐wide surveying
Q38410241	Spectral measures of bipartivity in complex networks
Q30837003	SpliceNet: recovering splicing isoform-specific differential gene networks from RNA-Seq data of normal and diseased samples
Q47948410	Spontaneous emergence of modularity in a model of evolving individuals and in real networks
Q39339020	Sport science integration: An evolutionary synthesis
Q51282779	Spotlight: Assembly of protein complexes by integrating graph clustering methods
Q38378698	Stability from structure: metabolic networks are unlike other biological networks
Q44109826	Stability of Control Networks in Autonomous Homeostatic Regulation of Stem Cell Lineages
Q25255720	Stable evolutionary signal in a yeast protein interaction network
Q39385283	State of the art technologies to explore long non-coding RNAs in cancer.
Q36240390	Statistical Approaches for Gene Selection, Hub Gene Identification and Module Interaction in Gene Co-Expression Network Analysis: An Application to Aluminum Stress in Soybean (Glycine max L.).
Q59800552	Statistical and Machine Learning Approaches to Predict Gene Regulatory Networks From Transcriptome Datasets
Q34191343	Statistical inference and reverse engineering of gene regulatory networks from observational expression data
Q30790493	Statistical methods for the analysis of high-throughput metabolomics data
Q28478674	Statistical properties and robustness of biological controller-target networks
Q34134041	Stochastic kinetics on networks: when slow is fast
Q33281141	Stochastic synchronization of genetic oscillator networks
Q29617360	Stochasticity in gene expression: from theories to phenotypes
Q37957690	Strategies to discover regulatory circuits of the mammalian immune system
Q33258019	Stratus not altocumulus: a new view of the yeast protein interaction network
Q64273712	Strengthening Insights in Microbial Ecological Networks from Theory to Applications
Q89747612	Stress genomics revisited: gene co-expression analysis identifies molecular signatures associated with childhood adversity
Q100633160	Stress-induced RNA-chromatin interactions promote endothelial dysfunction
Q36791174	Stress-induced rearrangements of cellular networks: Consequences for protection and drug design
Q58911787	Structural Models of Cortical Networks with Long-Range Connectivity
Q34595092	Structural Properties and Complexity of a New Network Class: Collatz Step Graphs
Q38109305	Structural Systems Pharmacology: The Role of 3D Structures in Next-Generation Drug Development
Q42248512	Structural and Functional Analysis of Giant Strong Component of Bacillus thuringiensis Metabolic Network
Q51331161	Structural and dynamical analysis of biological networks
Q39735618	Structural controllability of unidirectional bipartite networks
Q46268393	Structural host-microbiota interaction networks
Q36050842	Structural identifiability of cyclic graphical models of biological networks with latent variables
Q41771062	Structural influence of gene networks on their inference: analysis of C3NET.
Q42603845	Structural measures for network biology using QuACN
Q35081470	Structural principles within the human-virus protein-protein interaction network
Q58734005	Structural robustness of mammalian transcription factor networks reveals plasticity across development
Q90259648	Structure Optimization for Large Gene Networks Based on Greedy Strategy
Q27008867	Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Q49173858	Structure and evolution of gene regulatory networks in microbial genomes
Q38086776	Structure and function of long noncoding RNAs in epigenetic regulation
Q28476325	Structure of protein interaction networks and their implications on drug design
Q47120161	Structure of the human chromosome interaction network
Q33723479	Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs
Q34316989	Study of ZHENG differentiation in hepatitis B-caused cirrhosis: a transcriptional profiling analysis
Q42566617	Study of drug function based on similarity of pathway fingerprint
Q37380377	Study on incompatibility of traditional chinese medicine: evidence from formula network, chemical space, and metabolism room.
Q38695283	Studying complex system: calcium oscillations as attractor of cell differentiation
Q38036241	Studying protein-protein interaction networks: a systems view on diseases
Q35137389	Studying the system-level involvement of microRNAs in Parkinson's disease
Q37797789	Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories
Q27349248	Subgraph centrality in complex networks
Q55240905	Super Resolution Network Analysis Defines the Molecular Architecture of Caveolae and Caveolin-1 Scaffolds.
Q42716637	Surprise maximization reveals the community structure of complex networks
Q35074256	SurpriseMe: an integrated tool for network community structure characterization using Surprise maximization.
Q34262900	SurvNet: a web server for identifying network-based biomarkers that most correlate with patient survival data
Q30490645	Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
Q33787486	Surveying the Maize community for their diversity and pedigree visualization needs to prioritize tool development and curation.
Q36785269	Sustained oscillations in extended genetic oscillatory systems
Q30580556	Sustained-input switches for transcription factors and microRNAs are central building blocks of eukaryotic gene circuits
Q51944444	Synchronization of electronic genetic networks
Q64110705	Synchronization of interconnected heterogeneous networks: The role of network sizes
Q35235194	Synergistic transcriptional and post-transcriptional regulation of ESC characteristics by core pluripotency transcription factors in protein-protein interaction networks
Q47724118	System Biology Approach: Gene Network Analysis for Muscular Dystrophy
Q38696402	System analysis identifies distinct and common functional networks governed by transcription factor ASCL1, in glioma and small cell lung cancer.
Q38440384	Systematic Analysis of Protein Interaction Network Associated with Azoospermia.
Q35722850	Systematic Analysis of the Molecular Mechanism Underlying Decidualization Using a Text Mining Approach
Q21563475	Systematic analysis of compositional order of proteins reveals new characteristics of biological functions and a universal correlate of macroevolution
Q36960706	Systematic analysis of the molecular mechanism underlying atherosclerosis using a text mining approach
Q37480571	Systematic dissection of dysregulated transcription factor-miRNA feed-forward loops across tumor types
Q35080434	Systematic identification of core transcription factors mediating dysregulated links bridging inflammatory bowel diseases and colorectal cancer
Q30000845	Systematic identification of functional plant modules through the integration of complementary data sources
Q42050971	Systematic prediction of drug combinations based on clinical side-effects
Q37030590	Systematic screens for human disease genes, from yeast to human and back
Q61806946	Systematically Characterizing Chemical Profile and Potential Mechanisms of Qingre Lidan Decoction Acting on Cholelithiasis by Integrating UHPLC-QTOF-MS and Network Target Analysis
Q39169235	Systemic QSAR and phenotypic virtual screening: chasing butterflies in drug discovery
Q98177578	Systems Analysis of Insulin and IGF1 Receptors Networks in Breast Cancer Cells Identifies Commonalities and Divergences in Expression Patterns
Q47397587	Systems Bioinformatics: increasing precision of computational diagnostics and therapeutics through network-based approaches
Q58928389	Systems Biology
Q58928412	Systems Biology
Q36527837	Systems Biology Approaches and Applications in Obesity, Diabetes, and Cardiovascular Diseases
Q47420453	Systems Biology Approaches to Redox Metabolism in Stress and Disease States
Q98735534	Systems Biology Approaches to Understanding the Human Immune System
Q63351951	Systems Biology and Multi-Omics Integration: Viewpoints from the Metabolomics Research Community.
Q29040976	Systems Biology of the Fluxome
Q56374028	Systems Biology-Based Investigation of Host-Plasmodium Interactions
Q34934129	Systems Epidemiology: What's in a Name?
Q28069197	Systems Medicine as an Emerging Tool for Cardiovascular Genetics
Q92297299	Systems NMR: single-sample quantification of RNA, proteins and metabolites for biomolecular network analysis
Q36303108	Systems Proteomics for Translational Network Medicine
Q27023883	Systems analysis of high-throughput data
Q42872718	Systems biology analysis of the endocannabinoid system reveals a scale-free network with distinct roles for anandamide and 2-arachidonoylglycerol
Q37321872	Systems biology and cancer prevention: all options on the table
Q92092656	Systems biology and network pharmacology of frailty reveal novel epigenetic targets and mechanisms
Q38647215	Systems biology and the future of medicine
Q45008952	Systems biology and the integration of mechanistic explanation and mathematical explanation
Q35905281	Systems biology and the molecular circuits of cancer
Q26824124	Systems biology approaches for discovering biomarkers for traumatic brain injury
Q36583266	Systems biology approaches to metabolic and cardiovascular disorders: network perspectives of cardiovascular metabolism
Q26858826	Systems biology as a comparative approach to understand complex gene expression in neurological diseases
Q37455588	Systems biology asks new questions about sex differences
Q37953017	Systems biology impact on antiepileptic drug discovery
Q33745563	Systems biology in heart diseases.
Q31128463	Systems biology integration of proteomic data in rodent models of depression reveals involvement of the immune response and glutamatergic signaling
Q35781507	Systems biology network-based discovery of a small molecule activator BL-AD008 targeting AMPK/ZIPK and inducing apoptosis in cervical cancer
Q35864807	Systems biology of fungal infection.
Q35939809	Systems biology of innate immunity
Q28081359	Systems biology of polycystic kidney disease: a critical review
Q37897423	Systems biology of stem cells: three useful perspectives to help overcome the paradigm of linear pathways
Q37860613	Systems biology of tuberculosis
Q34297826	Systems biology perspectives on minimal and simpler cells
Q38008573	Systems biology tools for toxicology
Q38148844	Systems biology, complexity, and the impact on antiepileptic drug discovery
Q42154524	Systems biology. How information theory handles cell signaling and uncertainty
Q37632672	Systems biology: the elements and principles of life
Q35229993	Systems genetics analysis of mouse chondrocyte differentiation
Q27012769	Systems genetics for drug target discovery
Q34455661	Systems mapping of HIV-1 infection
Q35688664	Systems medicine: evolution of systems biology from bench to bedside
Q24288895	Systems medicine: the future of medical genomics and healthcare
Q37542931	Systems pathology--taking molecular pathology into a new dimension
Q34111154	Systems pharmacology of arrhythmias
Q47104983	Systems serology: profiling vaccine induced humoral immunity against HIV.
Q36212769	Systems-ADME/Tox: resources and network approaches
Q37909892	Systems-biology approaches for predicting genomic evolution
Q28748376	Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data
Q52665587	TBC2target: A Resource of Predicted Target Genes of Tea Bioactive Compounds.
Q34704696	TNA4OptFlux--a software tool for the analysis of strain optimization strategies
Q21133944	TRIP database 2.0: a manually curated information hub for accessing TRP channel interaction network
Q28647730	Tail-scope: Using friends to estimate heavy tails of degree distributions in large-scale complex networks
Q47690085	Tailored Approaches in Drug Development and Diagnostics: From Molecular Design to Biological Model Systems
Q37252710	Tailoring T-cell receptor signals by proximal negative feedback mechanisms
Q27936046	Target hub proteins serve as master regulators of development in yeast
Q38467989	Targeted exploration and analysis of large cross-platform human transcriptomic compendia
Q36919983	Targeting the human cancer pathway protein interaction network by structural genomics
Q46246460	Taxonomic and Functional Differences between Microbial Communities in Qinghai Lake and Its Input Streams.
Q97066818	TeaCoN: a database of gene co-expression network for tea plant (Camellia sinensis)
Q38757506	Team Sports Performance Analysed Through the Lens of Social Network Theory: Implications for Research and Practice.
Q41500723	Temperature and solvent dependence of the dynamical landscape of tau protein conformations
Q42247285	Template-based structure prediction and classification of transcription factors in Arabidopsis thaliana
Q35625322	Temporal evolution of biomedical research grant collaborations across multiple scales--a CTSA baseline study
Q40325275	Temporal protein expression pattern in intracellular signalling cascade during T-cell activation: a computational study
Q34416724	Ten years of genetics and genomics: what have we achieved and where are we heading?
Q37553432	Tetramer formation in Arabidopsis MADS domain proteins: analysis of a protein-protein interaction network.
Q64101664	The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes
Q35861050	The Analysis of Intracellular and Intercellular Calcium Signaling in Human Anterior Lens Capsule Epithelial Cells with Regard to Different Types and Stages of the Cataract
Q42746612	The Architecture and Conservation Pattern of Whole-Cell Control Circuitry
Q91802631	The Centrosome and the Primary Cilium: The Yin and Yang of a Hybrid Organelle
Q37615113	The Combination of Three Components Derived from Sheng MaiSan Protects Myocardial Ischemic Diseases and Inhibits Oxidative Stress via Modulating MAPKs and JAK2-STAT3 Signaling Pathways Based on Bioinformatics Approach
Q35738835	The Cortical and Striatal Gene Expression Profile of 100 Hz Electroacupuncture Treatment in 6-Hydroxydopamine-Induced Parkinson's Disease Model
Q28597932	The Double-Stranded DNA Virosphere as a Modular Hierarchical Network of Gene Sharing
Q58089206	The Endolysosomal System and Proteostasis: From Development to Degeneration
Q47447841	The Evolution of Gene-Specific Transcriptional Noise Is Driven by Selection at the Pathway Level.
Q24564171	The G protein-coupled receptor heterodimer network (GPCR-HetNet) and its hub components
Q42377148	The Hidden Flow Structure and Metric Space of Network Embedding Algorithms Based on Random Walks
Q51285896	The Landscape of Evolution: Reconciling Structural and Dynamic Properties of Metabolic Networks in Adaptive Diversifications
Q37353706	The Local Edge Machine: inference of dynamic models of gene regulation.
Q36031974	The Mechanism Research of Qishen Yiqi Formula by Module-Network Analysis
Q35131077	The Mediator complex of Caenorhabditis elegans: insights into the developmental and physiological roles of a conserved transcriptional coregulator
Q28476170	The Modular Organization of Protein Interactions in Escherichia coli
Q47576030	The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops.
Q28533535	The Noncoding RNA Expression Profile and the Effect of lncRNA AK126698 on Cisplatin Resistance in Non-Small-Cell Lung Cancer Cell
Q35675800	The Oral Tolerance as a Complex Network Phenomenon
Q51761787	The Pathway Coexpression Network: Revealing pathway relationships.
Q90055198	The Phenotype Paradox: Lessons From Natural Transcriptome Evolution on How to Engineer Plants
Q33697242	The Plasmodium protein network diverges from those of other eukaryotes
Q61817955	The Potential Mechanism of Bufadienolide-Like Chemicals on Breast Cancer via Bioinformatics Analysis
Q35947976	The Regulatory Network of Pseudomonas aeruginosa
Q48301839	The Signature of Maternal Social Rank in Placenta Deoxyribonucleic Acid Methylation Profiles in Rhesus Monkeys.
Q21089567	The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
Q39199069	The Upsides and Downsides of Organelle Interconnectivity
Q38630215	The adaptive landscape of wildtype and glycosylation-deficient populations of the industrial yeast Pichia pastoris.
Q37739930	The amyloid interactome: Exploring protein aggregation
Q64264785	The analysis of a time-course transcriptome profile by systems biology approaches reveals key molecular processes in acute kidney injury
Q28538399	The anti-tumor histone deacetylase inhibitor SAHA and the natural flavonoid curcumin exhibit synergistic neuroprotection against amyloid-beta toxicity
Q33436471	The apoptotic machinery as a biological complex system: analysis of its omics and evolution, identification of candidate genes for fourteen major types of cancer, and experimental validation in CML and neuroblastoma
Q42953371	The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks
Q36201724	The biological limitations of transcriptomics in elucidating stress and stress responses
Q34417698	The biological networks in studying cell signal transduction complexity: The examples of sperm capacitation and of endocannabinoid system.
Q51437002	The causes of epistasis in genetic networks
Q42217583	The combination of the functionalities of feedback circuits is determinant for the attractors' number and size in pathway-like Boolean networks
Q28533374	The condition-dependent transcriptional landscape of Burkholderia pseudomallei
Q84992027	The coordinated expression, interaction and evolution of the neuroendocrine genes
Q37808166	The critical protein interactions and structures that elicit growth deregulation in cancer and viral replication
Q34782604	The current excitement about copy-number variation: how it relates to gene duplications and protein families
Q40171196	The cytokine network in women with an asymptomatic short cervix and the risk of preterm delivery.
Q33999634	The cytomatrix as a cooperative system of macromolecular and water networks
Q34099168	The dichotomy in degree correlation of biological networks.
Q49903628	The differentially expressed genes of Human Sporadic Cerebral Cavernous Malformations
Q34436908	The drug cocktail network
Q35619081	The dynamic consequences of cooperation and competition in small-world networks
Q38002308	The economy of brain network organization
Q42107364	The effect of food intake on gene expression in human peripheral blood
Q34363491	The effect of network biology on drug toxicology
Q41809274	The effects of graded levels of calorie restriction: VII. Topological rearrangement of hypothalamic aging networks
Q39846956	The emergence of overlapping scale-free genetic architecture in digital organisms.
Q51905685	The evolution of genetic networks by non-adaptive processes
Q38780555	The evolution of network topology by selective removal
Q34634078	The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks
Q55898950	The evolutionary origins of modularity
Q28706318	The evolutionary time machine: using dormant propagules to forecast how populations can adapt to changing environments
Q35108626	The expanded human disease network combining protein-protein interaction information.
Q92889146	The exposome and health: Where chemistry meets biology
Q34494671	The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes
Q42741475	The functional structure of central carbon metabolism in Pseudomonas putida KT2440.
Q30478263	The fundamental organization of cardiac mitochondria as a network of coupled oscillators
Q36924454	The gene expression landscape of breast cancer is shaped by tumor protein p53 status and epithelial-mesenchymal transition
Q36520988	The genetics of human longevity
Q37187340	The genetics of multiple sclerosis: SNPs to pathways to pathogenesis
Q38020959	The genetics of multiple sclerosis: an up-to-date review
Q28749079	The genome of a pathogenic rhodococcus: cooptive virulence underpinned by key gene acquisitions
Q37996198	The genome-linked protein VPg of plant viruses—a protein with many partners
Q37854251	The grass leaf developmental gradient as a platform for a systems understanding of the anatomical specialization of C4 leaves
Q24678240	The human disease network
Q33892957	The human plasma membrane peripherome: visualization and analysis of interactions.
Q37395221	The human protein coevolution network.
Q43125319	The impact of cellular networks on disease comorbidity
Q36760027	The impact of translocations and gene fusions on cancer causation
Q24655183	The implications of human metabolic network topology for disease comorbidity
Q33939198	The implications of relationships between human diseases and metabolic subpathways
Q28646652	The importance of delineating networks by activity type in bottlenose dolphins (Tursiops truncatus) in Cedar Key, Florida
Q35196420	The inferred cardiogenic gene regulatory network in the mammalian heart
Q33286818	The information coded in the yeast response elements accounts for most of the topological properties of its transcriptional regulation network
Q51538472	The interaction graph structure of mass-action reaction networks
Q42086831	The interaction networks of structured RNAs
Q41050075	The interdependent network of gene regulation and metabolism is robust where it needs to be.
Q24610233	The interplay between transcription factors and microRNAs in genome-scale regulatory networks
Q33789038	The knowledge-integrated network biomarkers discovery for major adverse cardiac events
Q47218057	The long past of systems biology
Q42051779	The metabolic background is a global player in Saccharomyces gene expression epistasis
Q37975976	The methylproteome and the intracellular methylation network.
Q51494026	The molecular and mathematical basis of Waddington's epigenetic landscape: A framework for post‐Darwinian biology?
Q41045679	The nature of "internal sensations" of higher brain functions may be derived from the design rules for artificial machines that can produce them.
Q83907088	The network properties of myelodysplastic syndromes pathogenesis revealed by an integrative systems biological method
Q92797825	The network takeover reaches psychopathology
Q38220786	The neuronal activity-driven transcriptome.
Q37082703	The new biology: a bridge to clinical cardiology
Q41859361	The organisational structure of protein networks: revisiting the centrality-lethality hypothesis
Q24675243	The origin of modern metabolic networks inferred from phylogenomic analysis of protein architecture
Q24673696	The origins and evolution of functional modules: lessons from protein complexes
Q41807086	The orphan disease networks
Q34585717	The pain interactome: connecting pain-specific protein interactions
Q34775717	The pairwise disconnectivity index as a new metric for the topological analysis of regulatory networks.
Q35998778	The phenogenetic logic of life
Q64992696	The plant body as a network of semi-autonomous agents: a review.
Q48373683	The principle of coherence in multi-level brain information processing
Q41411091	The protein interaction network of the epithelial junctional complex: a system-level analysis
Q36333310	The reconstruction of complex networks with community structure
Q33321940	The regulatory network of E. coli metabolism as a Boolean dynamical system exhibits both homeostasis and flexibility of response
Q50872977	The relationship between node degree and dissipation rate in networks of diffusively coupled oscillators and its significance for pancreatic beta cells
Q33857746	The role of actin in capacitation-related signaling: an in silico and in vitro study
Q33868449	The role of cellular objectives and selective pressures in metabolic pathway evolution.
Q92932659	The role of detours in individual human navigation patterns of complex networks
Q42924615	The role of disorder in interaction networks: a structural analysis
Q36593086	The role of modelling in identifying drug targets for diseases of the cell cycle
Q28751801	The role of predictive modelling in rationally re-engineering biological systems
Q37938718	The role of protein disorder in the 14-3-3 interaction network
Q38638471	The role played by modified bioinspired surfaces in interfacial properties of biomaterials.
Q27438156	The scale-free dynamics of eukaryotic cells
Q64232346	The sensitivity to Hsp90 inhibitors of both normal and oncogenically transformed cells is determined by the equilibrium between cellular quiescence and activity
Q40792982	The specificity and topology of chromatin interaction pathways in yeast
Q33611274	The spermatozoa caught in the net: the biological networks to study the male gametes post-ejaculatory life
Q40587253	The strength of genetic interactions scales weakly with mutational effects
Q56601122	The structure and dynamics of multilayer networks
Q94544437	The tapeworm interactome: inferring confidence scored protein-protein interactions from the proteome of Hymenolepis microstoma
Q33581367	The topological relationship between the large-scale attributes and local interaction patterns of complex networks
Q33347894	The topology of the bacterial co-conserved protein network and its implications for predicting protein function
Q92582860	The topology of vitronectin: A complementary feature for neuroblastoma risk classification based on computer-aided detection
Q42735015	The transcriptional landscape of hematopoietic stem cell ontogeny
Q34155805	The uptake and fate of vanadyl ion in ascidian blood cells and a detailed hypothesis for the mechanism and location of biological vanadium reduction. A visible and X-ray absorption spectroscopic study
Q33369980	The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks
Q37679716	The use of network analyses for elucidating mechanisms in cardiovascular disease
Q45944919	The value of prior knowledge in machine learning of complex network systems.
Q35855112	Thematic review series: The pathogenesis of atherosclerosis. Toward a biological network for atherosclerosis
Q36672069	Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Multi-organ whole-genome measurements and reverse engineering to uncover gene networks underlying complex traits
Q36609005	Thematic review series: systems biology approaches to metabolic and cardiovascular disorders. Reverse engineering gene networks to identify key drivers of complex disease phenotypes
Q36434850	Therapeutic target database update 2016: enriched resource for bench to clinical drug target and targeted pathway information
Q51923396	Thermodynamics of spin systems on small-world hypergraphs.
Q47813289	Thinking on building the network cardiovasology of Chinese medicine
Q46745998	Three mechanisms for power laws on the Cayley tree
Q35974106	Time-dependent degree-degree correlations in epileptic brain networks: from assortative to dissortative mixing
Q55191280	Time-evolving genetic networks reveal a NAC troika that negatively regulates leaf senescence in Arabidopsis.
Q30412371	Tinnitus: network pathophysiology-network pharmacology
Q64074304	To Embed or Not: Network Embedding as a Paradigm in Computational Biology
Q30651525	ToP: A Trend-of-Disease-Progression Procedure Works Well for Identifying Cancer Genes from Multi-State Cohort Gene Expression Data for Human Colorectal Cancer
Q37977413	Tools for protein-protein interaction network analysis in cancer research.
Q28732686	Top-down causation and emergence: some comments on mechanisms
Q39471955	Top-down causation by information control: from a philosophical problem to a scientific research programme
Q51462918	Topological Biosignatures: Large-Scale Structure of Chemical Networks from Biology and Astrochemistry
Q27341894	Topological Small-World Organization of the Fibroblastic Reticular Cell Network Determines Lymph Node Functionality
Q30414346	Topological analysis and interactive visualization of biological networks and protein structures
Q34427589	Topological and functional properties of the small GTPases protein interaction network
Q33417875	Topological and organizational properties of the products of house-keeping and tissue-specific genes in protein-protein interaction networks
Q55139267	Topological and statistical analyses of gene regulatory networks reveal unifying yet quantitatively different emergent properties.
Q97643136	Topological and system-level protein interaction network (PIN) analyses to deduce molecular mechanism of curcumin
Q43704065	Topological characteristics of target genes regulated by abiotic-stress-responsible miRNAs in a rice interactome network
Q58714427	Topological motifs populate complex networks through grouped attachment
Q41841251	Topological properties of co-occurrence networks in published gene expression signatures
Q37330462	Topological properties of protein interaction networks from a structural perspective
Q51711928	Topological structural classes of complex networks
Q34058513	Topological structure of the space of phenotypes: the case of RNA neutral networks
Q92948546	Topology Effects on Sparse Control of Complex Networks with Laplacian Dynamics
Q35437255	Topology analysis and visualization of Potyvirus protein-protein interaction network
Q33244269	Topology and weights in a protein domain interaction network--a novel way to predict protein interactions
Q38477405	Topology aware functional similarity of protein interaction networks based on gene ontology
Q34508185	Topology of molecular interaction networks
Q51958664	Topology, tinkering and evolution of the human transcription factor network
Q99234761	Topology-driven protein-protein interaction network analysis detects genetic sub-networks regulating reproductive capacity
Q58053264	Toward First Principle Medical Diagnostics: On the Importance of Disease-Disease and Sign-Sign Interactions
Q97525228	Toward Systems Biomarkers of Response to Immune Checkpoint Blockers
Q42320195	Toward Time-Resolved Analysis of RNA Metabolism in Archaea Using 4-Thiouracil
Q28073967	Toward precision medicine of breast cancer
Q30499883	Towards a genome-wide transcriptogram: the Saccharomyces cerevisiae case.
Q28709323	Towards a “4I” approach to personalized healthcare
Q37696969	Towards genome-scale signalling network reconstructions
Q92668957	Towards perturbation prediction of biological networks using deep learning
Q24811476	Towards precise classification of cancers based on robust gene functional expression profiles
Q38378331	Towards systems biology of heterosis: a hypothesis about molecular network structure applied for the Arabidopsis metabolome
Q51535731	Towards tailored assays for cell-based approaches to toxicity testing
Q34279008	Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
Q37978978	Towards understanding how molecular networks evolve in plants
Q27921848	Toxicity testing in the 21st century: a vision and a strategy
Q39261883	Tracking socioeconomic vulnerability using network analysis: insights from an avian influenza outbreak in an ostrich production network
Q35854821	Transcription factor modularity in a gene-centered C. elegans core neuronal protein-DNA interaction network
Q48274680	Transcription factor network efficiency in the regulation of Candida albicans biofilms: it is a small world
Q33799860	Transcriptional Network Analysis Reveals Drought Resistance Mechanisms of AP2/ERF Transgenic Rice.
Q37428430	Transcriptional Network Architecture of Breast Cancer Molecular Subtypes
Q26777104	Transcriptional Network Growing Models Using Motif-Based Preferential Attachment
Q38944645	Transcriptional Networks in Single Perivascular Cells Sorted from Human Adipose Tissue Reveal a Hierarchy of Mesenchymal Stem Cells.
Q36400679	Transcriptional Regulatory Network Analysis of MYB Transcription Factor Family Genes in Rice
Q55479757	Transcriptional analysis of adipose tissue during development reveals depot-specific responsiveness to maternal dietary supplementation.
Q38985973	Transcriptional coexpression network reveals the involvement of varying stem cell features with different dysregulations in different gastric cancer subtypes
Q38313362	Transcriptional network dynamics in macrophage activation
Q35911038	Transcriptional network governing the angiogenic switch in human pancreatic cancer
Q38479037	Transcriptional profiling and co-expression network analysis identifies potential biomarkers to differentiate chronic hepatitis B and the caused cirrhosis
Q30044443	Transcriptional profiling of growth perturbations of the human malaria parasite Plasmodium falciparum
Q35611673	Transcriptional regulation of protein complexes within and across species
Q36817906	Transcriptional regulatory networks in Arabidopsis thaliana during single and combined stresses.
Q42777668	Transcriptome Analysis of Induced Pluripotent Stem Cell (iPSC)-derived Pancreatic β-like Cell Differentiation
Q37581992	Transcriptome analysis during seed germination of elite Chinese bread wheat cultivar Jimai 20.
Q33756712	Transcriptome analysis of psoriasis in a large case-control sample: RNA-seq provides insights into disease mechanisms
Q46421739	Transcriptome analysis reveals rod/cone photoreceptor specific signatures across mammalian retinas
Q35674997	Transcriptome organization for chronic alcohol abuse in human brain.
Q92219909	Transcriptome profiling of muscle in Nelore cattle phenotypically divergent for the ribeye muscle area
Q39385007	Transcriptome responses to combinations of stresses in Arabidopsis
Q38670701	Transcriptomic Profiling in Human Decidua of Severe Preeclampsia Detected by RNA Sequencing
Q33868618	Transcriptomic analysis identifies phosphatases as novel targets for adenotonsillar hypertrophy of pediatric obstructive sleep apnea
Q36596002	Transcriptomic analysis of the effects of Toll-like receptor 4 and its ligands on the gene expression network of hepatic stellate cells
Q38450973	Transcriptomic changes associated with DKK4 overexpression in pancreatic cancer cells detected by RNA-Seq
Q28543649	Transhydrogenase promotes the robustness and evolvability of E. coli deficient in NADPH production
Q37725711	Transittability of complex networks and its applications to regulatory biomolecular networks
Q51205308	Translating genome wide association study results to associations among common diseases: In silico study with an electronic medical record
Q46119227	Translational biology: from Arabidopsis flowers to grass inflorescence architecture
Q37637184	Treatment of obstructive sleep apnea alters cancer-associated transcriptional signatures in circulating leukocytes.
Q46013288	Troubleshooting and deconvoluting label-free cell phenotypic assays in drug discovery
Q33980073	Tumor-Associated Macrophages (TAMs) Form an Interconnected Cellular Supportive Network in Anaplastic Thyroid Carcinoma
Q31130075	Two-Way Gene Interaction From Microarray Data Based on Correlation Methods
Q51891278	Two-component genetic switch as a synthetic module with tunable stability.
Q48139040	Ubiquitin C decrement plays a pivotal role in replicative senescence of bone marrow mesenchymal stromal cells.
Q36050271	Uncovering Arabidopsis Membrane Protein Interactome Enriched in Transporters Using Mating-Based Split Ubiquitin Assays and Classification Models
Q37219171	Uncovering Driver DNA Methylation Events in Nonsmoking Early Stage Lung Adenocarcinoma
Q30425881	Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma
Q30383768	Uncovering New Pathogen-Host Protein-Protein Interactions by Pairwise Structure Similarity.
Q33325887	Uncovering a macrophage transcriptional program by integrating evidence from motif scanning and expression dynamics
Q36956053	Uncovering low-dimensional, miR-based signatures of acute myeloid and lymphoblastic leukemias with a machine-learning-driven network approach
Q41878629	Uncovering the co-evolutionary network among prokaryotic genes
Q57990767	Uncovering the topology of configuration space networks
Q47588490	Uncovering the transcriptional circuitry in skeletal muscle regeneration
Q64087040	Understanding Molecular Mechanisms of the Brain Through Transcriptomics
Q50082931	Understanding Tissue-Specific Gene Regulation
Q33903468	Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions
Q37070273	Understanding biological functions through molecular networks
Q37623130	Understanding cancer complexome using networks, spectral graph theory and multilayer framework
Q38075710	Understanding drugs and diseases by systems biology?
Q38203942	Understanding genetic variation - the value of systems biology
Q34195277	Understanding large multiprotein complexes: applying a multiple allosteric networks model to explain the function of the Mediator transcription complex
Q37538535	Understanding melanoma signaling networks as the basis for molecular targeted therapy
Q38010105	Understanding multimodal biological decisions from single cell and population dynamics
Q33286658	Understanding network concepts in modules
Q34668956	Understanding the implementation of evidence-based care: a structural network approach
Q35076233	Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge
Q38805134	Undiscovered Physiology of Transcript and Protein Networks
Q36163200	Unexpected links reflect the noise in networks.
Q82382777	Unique biological properties and application potentials of CD34+ CD38- stem cells from various sources
Q37249764	Uniting functional network topology and oscillations in the fronto-parietal single unit network of behaving primates
Q38701506	Universal attenuators and their interactions with feedback loops in gene regulatory networks
Q36762501	Universal distribution of component frequencies in biological and technological systems.
Q61815964	Universal scaling across biochemical networks on Earth
Q23921986	Unlocking proteomic heterogeneity in complex diseases through visual analytics
Q41243144	Unraveling a tumor type-specific regulatory core underlying E2F1-mediated epithelial-mesenchymal transition to predict receptor protein signatures
Q35063007	Unraveling the characteristics of microRNA regulation in the developmental and aging process of the human brain
Q36836716	Unravelling the world of cis-regulatory elements
Q57440757	Untangling Biological Networks Using Bioinformatics
Q93080930	Unveiling the Interplay between the TLR4/MD2 Complex and HSP70 in the Human Cardiovascular System: A Computational Approach
Q61807018	Unveiling the Link Between Inflammation and Adaptive Immunity in Breast Cancer
Q33559087	Use of Graph Database for the Integration of Heterogeneous Biological Data
Q37979724	Use of models in identification and prediction of physiology in critically ill surgical patients
Q39972145	Use of network analysis to capture key traits affecting tomato organoleptic quality
Q33719281	Using Effective Subnetworks to Predict Selected Properties of Gene Networks
Q91374145	Using INTERSPIA to Explore the Dynamics of Protein-Protein Interactions Among Multiple Species
Q27342088	Using Multi-objective Optimization to Identify Dynamical Network Biomarkers as Early-warning Signals of Complex Diseases
Q36228166	Using Sub-Network Combinations to Scale Up an Enumeration Method for Determining the Network Structures of Biological Functions.
Q34547306	Using an agent-based model to analyze the dynamic communication network of the immune response
Q27005781	Using biological networks to improve our understanding of infectious diseases
Q26748923	Using biological networks to integrate, visualize and analyze genomics data
Q36574268	Using contrast patterns between true complexes and random subgraphs in PPI networks to predict unknown protein complexes.
Q33308253	Using likelihood-free inference to compare evolutionary dynamics of the protein networks of H. pylori and P. falciparum
Q89292028	Using microRNA Networks to Understand Cancer
Q30571648	Using networks to understand medical data: the case of Class III malocclusions
Q27334820	Using regulatory and epistatic networks to extend the findings of a genome scan: identifying the gene drivers of pigmentation in merino sheep
Q38433884	Using scale and feather traits for module construction provides a functional approach to chicken epidermal development
Q40049161	Using the Contextual Hub Analysis Tool (CHAT) in Cytoscape to Identify Contextually Relevant Network Hubs
Q34255855	Utilizing RNA-Seq data for de novo coexpression network inference
Q45305317	Utilizing networks for differential analysis of chromatin interactions
Q35923851	Vaccinology in the era of high-throughput biology
Q51621327	Validation of gene regulatory networks: scientific and inferential
Q34325431	Viral perturbations of host networks reflect disease etiology
Q45905497	VirtualPlant: a software platform to support systems biology research.
Q36318145	Viruses - seeking and destroying the tumor program
Q42234001	Viruses and interactomes in translation
Q24812791	VisANT: data-integrating visual framework for biological networks and modules
Q35470460	Vision from next generation sequencing: multi-dimensional genome-wide analysis for producing gene regulatory networks underlying retinal development, aging and disease
Q42613021	Visualization and Analysis of the Complexome Network of Saccharomyces cerevisiae
Q38011629	Visualization of the interactome: what are we looking at?
Q33354103	Visualizing global properties of large complex networks
Q41916669	Voxel Scale Complex Networks of Functional Connectivity in the Rat Brain: Neurochemical State Dependence of Global and Local Topological Properties
Q64069764	WASABI: a dynamic iterative framework for gene regulatory network inference
Q36954017	WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013
Q55953950	Waddington’s Unfinished Critique of Neo-Darwinian Genetics: Then and Now
Q24680540	Weak pairwise correlations imply strongly correlated network states in a neural population
Q24812079	Web-based toolkits for topology prediction of transmembrane helical proteins, fold recognition, structure and binding scoring, folding-kinetics analysis and comparative analysis of domain combinations
Q33383005	What determines the assembly of transcriptional network motifs in Escherichia coli?
Q21133557	When is hub gene selection better than standard meta-analysis?
Q28650540	White adipose tissue reference network: a knowledge resource for exploring health-relevant relations
Q36915542	Whole-exome sequencing in obsessive-compulsive disorder identifies rare mutations in immunological and neurodevelopmental pathways
Q33245657	Why do hubs tend to be essential in protein networks?
Q41860577	Yeast Protein Interactome topology provides framework for coordinated-functionality
Q37271190	Yin and Yang of disease genes and death genes between reciprocally scale-free biological networks
Q83953982	[Asthma in the Archivos de Bronconeumología: a review of publications in the year 2009]
Q64269700	circRNA‑miRNA association for coronary heart disease
Q35631138	dbDEPC 2.0: updated database of differentially expressed proteins in human cancers
Q35769090	dbEMT: an epithelial-mesenchymal transition associated gene resource.
Q34765476	eQTL Epistasis - Challenges and Computational Approaches
Q113307600	graphsim: An R package for simulating gene expression data from graph structures of biological pathways
Q30753334	hARACNe: improving the accuracy of regulatory model reverse engineering via higher-order data processing inequality tests
Q51295510	hF‐measure: A new measurement for evaluating clusters in protein–protein interaction networks
Q34029521	iCTNet: a Cytoscape plugin to produce and analyze integrative complex traits networks
Q41902681	in silico identification of protein-protein interactions in Silkworm, Bombyx mori
Q64069753	m6Acomet: large-scale functional prediction of individual mA RNA methylation sites from an RNA co-methylation network
Q37519422	miR-429 identified by dynamic transcriptome analysis is a new candidate biomarker for colorectal cancer prognosis
Q96135888	miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology
Q36068215	microRNA Dysregulation in Prostate Cancer: Network Analysis Reveals Preferential Regulation of Highly Connected Nodes
Q36302743	microRNA-181a represses ox-LDL-stimulated inflammatory response in dendritic cell by targeting c-Fos
Q36095039	petal: Co-expression network modelling in R.
Q21202793	targetTB: a target identification pipeline for Mycobacterium tuberculosis through an interactome, reactome and genome-scale structural analysis
Q57790155	wTO: an R package for computing weighted topological overlap and a consensus network with integrated visualization tool
Q47244346	“Fuzziness” in the Celular Interactome: A Historical Perspective

P6179	Dimensions Publication ID	1018231980
P356	DOI	10.1038/NRG1272
P3181	OpenCitations bibliographic resource ID	247850
P698	PubMed publication ID	14735121
P5875	ResearchGate publication ID	8910145

P50	author	Albert-László Barabási	Q725467
P2093	author name string	Zoltán N Oltvai
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P433	issue	2
P304	page(s)	101-13
P577	publication date	2004-02-01
P13046	publication type of scholarly work	review article	Q7318358
P1433	published in	Nature Reviews Genetics	Q1071824
P1476	title	Network biology: understanding the cell's functional organization
P478	volume	5

Network biology: understanding the cell's functional organization

scientific article (publication date: February 2004)

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