| scholarly article | Q13442814 |
| P50 | author | Julio A Freyre-González | Q48053586 |
| Julio Collado-Vides | Q56518622 | ||
| P2093 | author name string | Luis G Treviño-Quintanilla | |
| José A Alonso-Pavón | |||
| P2860 | cites work | Are network motifs the spandrels of cellular complexity? | Q83961070 |
| Cytoscape: a software environment for integrated models of biomolecular interaction networks | Q24515682 | ||
| Network motifs: structure does not determine function | Q24548927 | ||
| An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs | Q24557485 | ||
| EcoCyc: a comprehensive database resource for Escherichia coli | Q24796847 | ||
| An evolutionary and functional assessment of regulatory network motifs | Q24797864 | ||
| Aggregation of topological motifs in the Escherichia coli transcriptional regulatory network | Q24799473 | ||
| Hierarchical structure and modules in the Escherichia coli transcriptional regulatory network revealed by a new top-down approach | Q24804022 | ||
| RegulonDB (version 5.0): Escherichia coli K-12 transcriptional regulatory network, operon organization, and growth conditions | Q25257226 | ||
| Hierarchical organization in complex networks | Q27347782 | ||
| Network biology: understanding the cell's functional organization | Q27861027 | ||
| Genetic regulatory mechanisms in the synthesis of proteins | Q28186173 | ||
| Specificity and stability in topology of protein networks | Q28216450 | ||
| Error and attack tolerance of complex networks | Q29547268 | ||
| Network motifs: simple building blocks of complex networks | Q29547340 | ||
| Network motifs in the transcriptional regulation network of Escherichia coli | Q29547342 | ||
| From molecular to modular cell biology | Q29547493 | ||
| Stochasticity in gene expression: from theories to phenotypes | Q29617360 | ||
| Hierarchical organization of modularity in metabolic networks | Q29618451 | ||
| Multistationarity, the basis of cell differentiation and memory. I. Structural conditions of multistationarity and other nontrivial behavior | Q30039742 | ||
| Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae). | Q33274892 | ||
| Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli | Q33287232 | ||
| The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli | Q33318472 | ||
| The topological relationship between the large-scale attributes and local interaction patterns of complex networks | Q33581367 | ||
| Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coli | Q33758245 | ||
| Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli | Q34010388 | ||
| In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimurium | Q34344106 | ||
| Phenotypic variation in bacteria: the role of feedback regulation | Q34502643 | ||
| Feed-forward loop circuits as a side effect of genome evolution | Q34547351 | ||
| Genomic analysis of the hierarchical structure of regulatory networks | Q35075442 | ||
| Identifying global regulators in transcriptional regulatory networks in bacteria | Q35565608 | ||
| Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditions | Q35613001 | ||
| The regulation of bacterial transcription initiation | Q35701605 | ||
| DNA supercoiling - a global transcriptional regulator for enterobacterial growth? | Q36026801 | ||
| Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay. | Q36742176 | ||
| Expression of the genes coding for the Escherichia coli integration host factor are controlled by growth phase, rpoS, ppGpp and by autoregulation | Q38302081 | ||
| FlhD/FlhC-regulated promoters analyzed by gene array and lacZ gene fusions | Q38302275 | ||
| Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome | Q38312050 | ||
| Coordinated Repression In Vitro of the Divergent fepA-fes Promoters of Escherichia coli by the Iron Uptake Regulation (Fur) Protein | Q39565945 | ||
| Evolution of transcription factors and the gene regulatory network in Escherichia coli | Q39735217 | ||
| The FlhD/FlhC complex, a transcriptional activator of the Escherichia coli flagellar class II operons | Q39899278 | ||
| Bacterial regulation: global regulatory networks | Q40080349 | ||
| GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins | Q40403442 | ||
| The regulation of transcription initiation by integration host factor | Q40468930 | ||
| Binding and transcriptional activation of non-flagellar genes by the Escherichia coli flagellar master regulator FlhD2C2. | Q42286761 | ||
| Mutational analysis of intervening sequences connecting the binding sites for integration host factor, PepA, PurR, and RNA polymerase in the control region of the Escherichia coli carAB operon, encoding carbamoylphosphate synthase | Q42933895 | ||
| Fur-DNA interactions at the bidirectional fepDGC-entS promoter region in Escherichia coli. | Q44169818 | ||
| Two different modes of transcription repression of the Escherichia coli acetate operon by IclR. | Q44256602 | ||
| A suf operon requirement for Fe-S cluster assembly during iron starvation in Escherichia coli | Q44854381 | ||
| Evidence for "pre-recruitment" as a new mechanism of transcription activation in Escherichia coli: the large excess of SoxS binding sites per cell relative to the number of SoxS molecules per cell | Q46616353 | ||
| In vitro reconstitution of catabolite repression in Escherichia coli. | Q46890280 | ||
| From specific gene regulation to genomic networks: a global analysis of transcriptional regulation in Escherichia coli | Q47817916 | ||
| Modular analysis of the transcriptional regulatory network of E. coli. | Q48500640 | ||
| Networks, dynamics, and modularity | Q49264332 | ||
| Transition of Escherichia coli from aerobic to micro-aerobic conditions involves fast and slow reacting regulatory components | Q50696692 | ||
| The modularity of biological regulatory networks | Q51646543 | ||
| Laws for the dynamics of regulatory networks | Q52186245 | ||
| The arginine regulon of Escherichia coli: whole-system transcriptome analysis discovers new genes and provides an integrated view of arginine regulation. | Q54452756 | ||
| Genetic evidence for pre-recruitment as the mechanism of transcription activation by SoxS of Escherichia coli: the dominance of DNA binding mutations of SoxS. | Q54497138 | ||
| Complex formation between activator and RNA polymerase as the basis for transcriptional activation by MarA and SoxS in Escherichia coli. | Q54546408 | ||
| Iron regulates transcription of the Escherichia coli ferric citrate transport genes directly and through the transcription initiation proteins | Q74516931 | ||
| Network topology and the evolution of dynamics in an artificial genetic regulatory network model created by whole genome duplication and divergence | Q83227849 | ||
| P4510 | describes a project that uses | Cytoscape | Q3699942 |
| P433 | issue | 10 | |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | R154 | |
| P577 | publication date | 2008-10-27 | |
| P1433 | published in | Genome Biology | Q5533480 |
| P1476 | title | Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach | |
| P478 | volume | 9 |
| Q27302055 | Abasy Atlas: a comprehensive inventory of systems, global network properties and systems-level elements across bacteria |
| Q37892104 | Bacterial growth rate reflects a bottleneck in resource allocation |
| Q33452871 | BioQuali Cytoscape plugin: analysing the global consistency of regulatory networks |
| Q42048227 | Dissecting the expression patterns of transcription factors across conditions using an integrated network-based approach. |
| Q64059802 | Evolutionary constraints on the complexity of genetic regulatory networks allow predictions of the total number of genetic interactions |
| Q51325377 | Extensive cross-talk and global regulators identified from an analysis of the integrated transcriptional and signaling network in Escherichia coli |
| Q57031370 | Feedbacks from the metabolic network to the genetic network reveal regulatory modules in E. coli and B. subtilis |
| Q37330215 | Genomic analysis reveals a tight link between transcription factor dynamics and regulatory network architecture |
| Q35632380 | Hierarchical decomposition of dynamically evolving regulatory networks |
| Q64994699 | Identification of co-evolving temporal networks. |
| Q47245987 | Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks |
| Q35044290 | Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis. |
| Q33519509 | Model of transcriptional activation by MarA in Escherichia coli |
| Q34100854 | More than just a metabolic regulator--elucidation and validation of new targets of PdhR in Escherichia coli |
| Q40134218 | Multi-hierarchical profiling: an emerging and quantitative approach to characterizing diverse biological networks |
| Q42508525 | Prokaryotic regulatory systems biology: Common principles governing the functional architectures of Bacillus subtilis and Escherichia coli unveiled by the natural decomposition approach |
| Q58611639 | RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12 |
| Q38177646 | Spatiotemporal positioning of multipotent modules in diverse biological networks |
| Q34775914 | Transcription factors in Escherichia coli prefer the holo conformation |
| Q37759074 | Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network |
Search more.