Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli

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Metabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli is …
instance of (P31):
review articleQ7318358
scholarly articleQ13442814

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P356DOI10.1128/MMBR.65.3.422-444.2001
P932PMC publication ID99035
P698PubMed publication ID11528004

P50authorLarry ReitzerQ68180555
P2093author name stringB L Schneider
P2860cites workIn a class of its own--the RNA polymerase sigma factor sigma 54 (sigma N).Q40637041
Resolution of the multiplicity of the glutamate and aspartate transport systems of Escherichia coliQ40829335
Arginine catabolism and the arginine succinyltransferase pathway in Escherichia coliQ24521436
The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome bindingQ24533360
Salmonella typhimurium LT2 catabolizes propionate via the 2-methylcitric acid cycleQ24549164
The zntA gene of Escherichia coli encodes a Zn(II)-translocating P-type ATPaseQ24648949
The complete genome sequence of Escherichia coli K-12Q27860542
The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coliQ28145321
Zinc(II) tolerance in Escherichia coli K-12: evidence that the zntA gene (o732) encodes a cation transport ATPaseQ28254195
An Inducible Phosphoenolpyruvate: Dihydroxyacetone Phosphotransferase System in Escherichia coliQ28267009
Peptide chemotaxis in E. coli involves the Tap signal transducer and the dipeptide permeaseQ28299665
Computer analysis of transcription regulatory patterns in completely sequenced bacterial genomesQ31346591
The hydH/G Genes from Escherichia coli code for a zinc and lead responsive two-component regulatory systemQ32179935
General nitrogen regulation of nitrate assimilation regulatory gene nasR expression in Klebsiella oxytoca M5alQ33636634
Alanine catabolism in Klebsiella aerogenes: molecular characterization of the dadAB operon and its regulation by the nitrogen assimilation control proteinQ33723642
The nac (nitrogen assimilation control) gene from Escherichia coli.Q33725514
The Escherichia coli starvation gene cstC is involved in amino acid catabolismQ33736036
Physiological role for the GlnK protein of enteric bacteria: relief of NifL inhibition under nitrogen-limiting conditions.Q33744305
Characterization of the adenylation site in the RNA 3'-terminal phosphate cyclase from Escherichia coliQ73212121
Repression and activation of arginine transport genes in Escherichia coli K 12 by the ArgP proteinQ73277814
Role of the transcriptional activator RocR in the arginine-degradation pathway of Bacillus subtilisQ73440275
Isolation and characterization of mutated FhlA proteins which activate transcription of the hyc operon (formate hydrogenlyase) of Escherichia coli in the absence of molybdate(1)Q73480315
Role of upstream activation sequences and integration host factor in transcriptional activation by the constitutively active prokaryotic enhancer-binding protein PspFQ73820861
Role of the GlnK signal transduction protein in the regulation of nitrogen assimilation in Escherichia coliQ77163593
Enzymological characterization of the signal-transducing uridylyltransferase/uridylyl-removing enzyme (EC 2.7.7.59) of Escherichia coli and its interaction with the PII proteinQ77299737
Reconstitution of the signal-transduction bicyclic cascade responsible for the regulation of Ntr gene transcription in Escherichia coliQ77299740
The regulation of Escherichia coli glutamine synthetase revisited: role of 2-ketoglutarate in the regulation of glutamine synthetase adenylylation stateQ77299743
Characterization of the GlnK protein of Escherichia coliQ77410681
In vivo and in vitro activities of the Escherichia coli sigma54 transcription activator, PspF, and its DNA-binding mutant, PspFDeltaHTHQ77760385
Heterotrimerization of PII-like signalling proteins: implications for PII-mediated signal transduction systemsQ78016783
Role of fadR and atoC(Con) mutations in poly(3-hydroxybutyrate-co-3-hydroxyvalerate) synthesis in recombinant pha+ Escherichia coliQ39797924
Activation of transcription initiation from the nac promoter of Klebsiella aerogenesQ39838501
Repression of the Klebsiella aerogenes nac promoterQ39838505
Autogenous control of PspF, a constitutively active enhancer-binding protein of Escherichia coliQ39846866
Why does Escherichia coli have two primary pathways for synthesis of glutamate?Q39896249
A new type of NtrC transcriptional activatorQ39898591
A genetic analysis of various functions of the TyrR protein of Escherichia coliQ39925542
Stimulation of dihydroxyacetone and glycerol kinase activity in Streptococcus faecalis by phosphoenolpyruvate-dependent phosphorylation catalyzed by enzyme I and HPr of the phosphotransferase systemQ39967480
Two succinic semialdehyde dehydrogenases are induced when Escherichia coli K-12 Is grown on gamma-aminobutyrate.Q39974329
Control of utilization of L-arginine, L-ornithine, agmatine, and putrescine as nitrogen sources in Escherichia coli K-12.Q39981224
Utilization of γ-Aminobutyric Acid as the Sole Carbon and Nitrogen Source by Escherichia coli K-12 MutantsQ40289179
Cascade control of Escherichia coli glutamine synthetase. Properties of the PII regulatory protein and the uridylyltransferase-uridylyl-removing enzymeQ40338394
The hydrogenases and formate dehydrogenases of Escherichia coliQ40523829
Two transcriptional start sites found in the promoter region of Escherichia coli glutamine permease operon, glnHPQ.Q40565969
Polyamine transport in bacteria and yeast.Q33787019
Purine catabolism in Escherichia coli and function of xanthine dehydrogenase in purine salvageQ33787423
Mutant of Escherichia coli K-12 Defective in the Transport of Basic Amino AcidsQ33787927
Basic amino acid transport in Escherichia coli: properties of canavanine-resistant mutantsQ33787950
The biology of enhancer-dependent transcriptional regulation in bacteria: insights from genome sequencesQ33898307
The bacterial enhancer-dependent sigma(54) (sigma(N)) transcription factorQ33968426
Role of ArgR in activation of the ast operon, encoding enzymes of the arginine succinyltransferase pathway in Salmonella typhimuriumQ33991548
Genetic analysis of a chromosomal region containing genes required for assimilation of allantoin nitrogen and linked glyoxylate metabolism in Escherichia coliQ33993272
Linkage map of Escherichia coli K-12, edition 10: the traditional mapQ34010050
Propionate oxidation in Escherichia coli: evidence for operation of a methylcitrate cycle in bacteria.Q34441697
Transcription of glnA by purified Escherichia coli components: core RNA polymerase and the products of glnF, glnG, and glnL.Q34558465
Analysis of the proteins andcis-acting elements regulating the stress-induced phage shock protein operonQ34755479
Protein-protein interaction in transport: periplasmic histidine-binding protein J interacts with P proteinQ35004905
Role of an Escherichia coli stress-response operon in stationary-phase survivalQ35098656
Escherichia coli genes regulated by cell-to-cell signalingQ35135075
The leucine-responsive regulatory protein of Escherichia coli negatively regulates transcription of ompC and micF and positively regulates translation of ompF.Q35576418
The nitrogen assimilation control protein, NAC, is a DNA binding transcription activator in Klebsiella aerogenesQ35588432
Glutathione is required for maximal transcription of the cobalamin biosynthetic and 1,2-propanediol utilization (cob/pdu) regulon and for the catabolism of ethanolamine, 1,2-propanediol, and propionate in Salmonella typhimurium LT2.Q35595241
DNA polymerase I function is required for the utilization of ethanolamine, 1,2-propanediol, and propionate by Salmonella typhimurium LT2Q35599859
Escherichia coli fliAZY operonQ35600293
Identification, nucleotide sequence, and characterization of PspF, the transcriptional activator of the Escherichia coli stress-induced psp operonQ35604606
Regulation of RNA polymerase sigma subunit synthesis in Escherichia coli: intracellular levels of four species of sigma subunit under various growth conditionsQ35613001
The Escherichia coli signal transducers PII (GlnB) and GlnK form heterotrimers in vivo: fine tuning the nitrogen signal cascadeQ35666839
Nitrogen regulatory protein C-controlled genes of Escherichia coli: scavenging as a defense against nitrogen limitationQ35852947
Initial cloning and sequencing of hydHG, an operon homologous to ntrBC and regulating the labile hydrogenase activity in Escherichia coli K-12.Q35867996
The nac (nitrogen assimilation control) gene from Klebsiella aerogenesQ36094758
RocR, a novel regulatory protein controlling arginine utilization in Bacillus subtilis, belongs to the NtrC/NifA family of transcriptional activatorsQ36105519
Characterization of the regulon controlled by the leucine-responsive regulatory protein in Escherichia coliQ36117943
The sigma 54 bacterial enhancer-binding protein family: mechanism of action and phylogenetic relationship of their functional domainsQ36122459
The glnB region of the Escherichia coli chromosomeQ36124055
Identification and characterization of dppA, an Escherichia coli gene encoding a periplasmic dipeptide transport proteinQ36128509
Role of the nac gene product in the nitrogen regulation of some NTR-regulated operons of Klebsiella aerogenesQ36193495
Autolysis-resistant peptidoglycan of anomalous composition in amino-acid-starved Escherichia coliQ36195979
Genetic and molecular characterization of the genes involved in short-chain fatty acid degradation in Escherichia coli: the ato systemQ36225954
Regulation of the ato operon by the atoC gene in Escherichia coliQ36237453
Identification and regulation of the glnL operator-promoter of the complex glnALG operon of Escherichia coliQ36286493
Nitrogen control of Salmonella typhimurium: co-regulation of synthesis of glutamine synthetase and amino acid transport systemsQ36338133
Mapping of two loci affecting the synthesis and structure of a periplasmic protein involved in arginine and ornithine transport in Escherichia coli K-12Q36389561
Derepression of an NAD-linked dehydrogenase that serves an Escherichia coli mutant for growth on glycerolQ36409801
The role of the NAC protein in the nitrogen regulation of Klebsiella aerogenesQ36460750
Ammonia acquisition in enteric bacteria: physiological role of the ammonium/methylammonium transport B (AmtB) proteinQ36506751
DNA bending and the initiation of transcription at sigma54-dependent bacterial promotersQ36568913
Properties of an Escherichia coli K-12 mutant defective in the transport of arginine and ornithineQ36602179
Independent Regulation of Transport and Biosynthesis of Arginine in Escherichia coli K-12Q36602190
Biochemical and molecular characterization of the oxidative branch of glycerol utilization by Citrobacter freundiiQ36689746
Regulation of Glutamine Transport in Escherichia coliQ36763726
A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transportQ36819131
Expression of sigma 54 (ntrA)-dependent genes is probably united by a common mechanismQ37055753
The leucine-responsive regulatory protein, a global regulator of metabolism in Escherichia coli.Q37060435
Isolation of the nitrogen assimilation regulator NR(I), the product of the glnG gene of Escherichia coliQ37348697
Role of integration host factor in the regulation of the glnHp2 promoter of Escherichia coliQ37411566
iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitroQ37508279
Products of nitrogen regulatory genes ntrA and ntrC of enteric bacteria activate glnA transcription in vitro: evidence that the ntrA product is a sigma factorQ37536836
Phage shock protein, a stress protein of Escherichia coliQ37680339
Expression of glnA in Escherichia coli is regulated at tandem promotersQ37682734
Effector-mediated stimulation of ATPase activity by the sigma 54-dependent transcriptional activator FHLA from Escherichia coliQ38295813
The Regulation of Glutamine Transport and Glutamine Synthetase in Salmonella typhimuriumQ39109048
Regulation of gamma-aminobutyric acid degradation in Escherichia coli by nitrogen metabolism enzymesQ39182498
Specificity and Regulation of γ-Aminobutyrate Transport in Escherichia coliQ39204802
Purification and properties of a kinase from Escherichia coli K-12 that phosphorylates two periplasmic transport proteinsQ39258546
The PspA protein of Escherichia coli is a negative regulator of sigma(54)-dependent transcriptionQ39498510
prpR, ntrA, and ihf functions are required for expression of the prpBCDE operon, encoding enzymes that catabolize propionate in Salmonella enterica serovar typhimurium LT2.Q39498966
Structure and function of bacterial sigma factorsQ39532182
Pathway choice in glutamate synthesis in Escherichia coli.Q39567512
Phosphorylation of the periplasmic binding protein in two transport systems for arginine incorporation in Escherichia coli K-12 is unrelated to the function of the transport systemQ39567714
Studies of regulation of expression of the propionate (prpBCDE) operon provide insights into how Salmonella typhimurium LT2 integrates its 1,2-propanediol and propionate catabolic pathwaysQ39568964
Compilation and analysis of sigma(54)-dependent promoter sequencesQ39729488
Involvement of stress protein PspA (phage shock protein A) of Escherichia coli in maintenance of the protonmotive force under stress conditionsQ41063571
Signal sensing by sigma 54-dependent regulators: derepression as a control mechanismQ41130496
Regulation of a transport operon promoter in Salmonella typhimurium: identification of sites essential for nitrogen regulationQ41377707
Nitrogen regulation in Salmonella typhimurium. Identification of an ntrC protein-binding site and definition of a consensus binding sequenceQ41383037
The Escherichia coli phage-shock-protein (psp) operonQ41477569
Eubacterial sigma-factorsQ42464079
Molecular characterization of an operon (hyp) necessary for the activity of the three hydrogenase isoenzymes inEscherichia coliQ42621838
Analysis of the hydA locus of Escherichia coli: two genes (hydN and hypF) involved in formate and hydrogen metabolismQ42631991
The integration host factor stimulates interaction of RNA polymerase with NIFA, the transcriptional activator for nitrogen fixation operons.Q42633651
A 12-cistron Escherichia coli operon (hyf) encoding a putative proton-translocating formate hydrogenlyase systemQ42668439
Appearance of a stress-response protein, phage-shock protein A, in Escherichia coli exposed to hydrophobic organic solventsQ44508246
Purification and properties of a periplasmic glutamate-aspartate binding protein from Escherichia coli K12 strain W3092Q44526305
Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide-binding proteinQ44532226
Cloning and complete nucleotide sequence of the Escherichia coli glutamine permease operon (glnHPQ).Q46172044
Salmonella typhimurium apparently perceives external nitrogen limitation as internal glutamine limitationQ46425123
The phosphorylated form of the enhancer-binding protein NTRC has an ATPase activity that is essential for activation of transcriptionQ46638401
Basic amino acid transport in Escherichia coliQ47753365
The prpE gene of Salmonella typhimurium LT2 encodes propionyl-CoA synthetaseQ47946223
A small, stable RNA induced by oxidative stress: role as a pleiotropic regulator and antimutatorQ48047346
An alternative PII protein in the regulation of glutamine synthetase in Escherichia coliQ48062400
Characterization of divergent NtrA-dependent promoters in the anaerobically expressed gene cluster coding for hydrogenase 3 components of Escherichia coliQ48278846
Factors affecting transcriptional regulation of the formate-hydrogen-lyase pathway of Escherichia coliQ48344054
Peptide uptake by Salmonella typhimurium. The periplasmic oligopeptide-binding proteinQ48361847
Identification of a new prp locus required for propionate catabolism in Salmonella typhimurium LT2.Q50139467
A degradation pathway of propionate in Salmonella typhimurium LT-2.Q50197863
Nitrogen regulation of transport operons: analysis of promoters argTr and dhuA.Q50200713
Covalent modification of bacterial glutamine synthetase: physiological significanceQ50209962
Characterization of the Escherichia coli RNA 3'-terminal phosphate cyclase and its sigma54-regulated operon.Q53946258
ZntR is a Zn(II)-responsive MerR-like transcriptional regulator of zntA in Escherichia coli.Q54104280
Homologs of the vancomycin resistance D-Ala-D-Ala dipeptidase VanX in Streptomyces toyocaensis, Escherichia coli and Synechocystis: attributes of catalytic efficiency, stereoselectivity and regulation with implications for function.Q54123772
PspF and IHF bind co-operatively in the psp promoter-regulatory region of Escherichia coli.Q54560751
Transcriptional regulation of ferric citrate transport in Escherichia coli K-12. Fecl belongs to a new subfamily of sigma 70-type factors that respond to extracytoplasmic stimuli.Q54602170
Regulated expression in vitro of genes coding for formate hydrogenlyase components of Escherichia coli.Q54630112
Purification and DNA-binding properties of FHLA, the transcriptional activator of the formate hydrogenlyase system from Escherichia coli.Q54630116
Stress-induced expression of the Escherichia coli phage shock protein operon is dependent on sigma 54 and modulated by positive and negative feedback mechanisms.Q54691252
Characterization and sequence of the Escherichia coli stress-induced psp operon.Q54694592
Characterization of a cis regulatory DNA element necessary for formate induction of the formate dehydrogenase gene (fdhF) of Escherichia coli.Q54734152
RpoN-dependent transcription of rpoH?Q63360765
Chain-terminating mutants affecting a periplasmic binding protein involved in the active transport of arginine and ornithine in Escherichia coliQ67257512
Mechanism of regulation of the formate-hydrogenlyase pathway by oxygen, nitrate, and pH: definition of the formate regulonQ67836270
Involvement of the ntrA gene product in the anaerobic metabolism of Escherichia coliQ68221710
ato Operon: a Highly Inducible System for Acetoacetate and Butyrate Degradation in Escherichia coliQ69212994
Thymine and Uracil Catabolism in Escherichia coliQ69229475
Transcription of glnA in E. coli is stimulated by activator bound to sites far from the promoterQ69881595
On the redox control of synthesis of anaerobically induced enzymes in enterobacteriaceaeQ70306218
Phosphorylation in vivo and in vitro of the arginine-ornithine periplasmic transport protein of Escherichia coliQ70395151
ATPase activity of TyrR, a transcriptional regulatory protein for sigma 70 RNA polymeraseQ70769645
Regulation of codBA operon expression in Escherichia coli by UTP-dependent reiterative transcription and UTP-sensitive transcriptional start site switchingQ71588049
glnF-lacZ fusions in Escherichia coli: studies on glnF expression and its chromosomal orientationQ72591402
P433issue3
P921main subjectEscherichia coliQ25419
P304page(s)422-44, table of contents
P577publication date2001-09-01
P1433published inMicrobiology and Molecular Biology ReviewsQ6839270
P1476titleMetabolic context and possible physiological themes of sigma(54)-dependent genes in Escherichia coli
P478volume65

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Q24539581The Escherichia coli gabDTPC operon: specific gamma-aminobutyrate catabolism and nonspecific induction.
Q52597155The Sigma Factor σ54 is Required for the Long-Term Survival of Leptospira biflexa in Water.
Q40345503The growth advantage in stationary-phase phenotype conferred by rpoS mutations is dependent on the pH and nutrient environment
Q36540444The iron stimulon of Xylella fastidiosa includes genes for type IV pilus and colicin V-like bacteriocins
Q35978799The response regulator Rrp2 is essential for the expression of major membrane lipoproteins in Borrelia burgdorferi
Q36226866The second paradigm for activation of transcription.
Q50102115The sigma54 regulon (sigmulon) of Pseudomonas putida
Q54441778The two-component systems PrrBA and NtrYX co-ordinately regulate the adaptation of Brucella abortus to an oxygen-limited environment.
Q51013084The σ54-dependent two-component system regulating sulfur oxidization (Sox) system in Acidithiobacillus caldus and some chemolithotrophic bacteria.
Q41172820Transcriptional organization and regulatory elements of a Pseudomonas sp. strain ADP operon encoding a LysR-type regulator and a putative solute transport system
Q35091372Transcriptional profiling of nitrogen fixation and the role of NifA in the diazotrophic endophyte Azoarcus sp. strain BH72
Q48084693Transcriptional regulatory cascade for elastase production in Vibrio vulnificus: LuxO activates luxT expression and LuxT represses smcR expression.
Q33826443Transcriptional response of Escherichia coli to ammonia and glucose fluctuations
Q34662999Transcriptome sequencing reveals the virulence and environmental genetic programs of Vibrio vulnificus exposed to host and estuarine conditions.
Q54204648Two mechanisms for putrescine-dependent transcriptional expression of the putrescine aminotransferase gene, ygjG, in Escherichia coli.
Q40744179Vibrio fischeri sigma54 controls motility, biofilm formation, luminescence, and colonization
Q34785700mRNA expression profiles for Escherichia coli ingested by normal and phagocyte oxidase-deficient human neutrophils
Q35212023rpoN1, but not rpoN2, is required for twitching motility, natural competence, growth on nitrate, and virulence of Ralstonia solanacearum.
Q43096103σ(N) -dependent control of acid resistance and the locus of enterocyte effacement in enterohemorrhagic Escherichia coli is activated by acetyl phosphate in a manner requiring flagellar regulator FlhDC and the σ(S) antagonist FliZ.
Q35837610σ54-dependent regulome in Desulfovibrio vulgaris Hildenborough

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