Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli

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Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli is …
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scholarly articleQ13442814

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P6179Dimensions Publication ID1038321369
P356DOI10.1186/1471-2180-7-53
P932PMC publication ID1905917
P698PubMed publication ID17559662
P5875ResearchGate publication ID6276632

P50authorOsbaldo ResendisQ55860492
Julio Collado-VidesQ56518622
Guillermo GossetQ63245359
Milton H SaierQ88174842
P2093author name stringJulio A Freyre-Gonzalez
Rosa María Gutierrez-Ríos
P2860cites workCluster analysis and display of genome-wide expression patternsQ24644463
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RNA expression analysis using a 30 base pair resolution Escherichia coli genome arrayQ28139158
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Functional interactions between the carbon and iron utilization regulators, Crp and Fur, in Escherichia coliQ33758245
Topological units of environmental signal processing in the transcriptional regulatory network of Escherichia coli.Q33841134
The complete phosphotransferase system in Escherichia coliQ33947518
The cyclic AMP receptor protein is dependent on GcvA for regulation of the gcv operon.Q33991534
Vectorial metabolism and the evolution of transport systemsQ33994560
Transcriptome analysis of Crp-dependent catabolite control of gene expression in Escherichia coliQ34148879
Genome-wide analysis of the stationary-phase sigma factor (sigma-H) regulon of Bacillus subtilisQ34317764
In vitro binding of the pleiotropic transcriptional regulatory protein, FruR, to the fru, pps, ace, pts and icd operons of Escherichia coli and Salmonella typhimuriumQ34344106
Identifying global regulators in transcriptional regulatory networks in bacteriaQ35565608
Frur mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coliQ35600690
Growth-phase-dependent expression of cspD, encoding a member of the CspA family in Escherichia coliQ35628051
Fis, an accessorial factor for transcriptional activation of the mar (multiple antibiotic resistance) promoter of Escherichia coli in the presence of the activator MarA, SoxS, or Rob.Q35633343
Regulation at complex bacterial promoters: how bacteria use different promoter organizations to produce different regulatory outcomesQ35737932
Influence of cyclic AMP, agmatine, and a novel protein encoded by a flanking gene on speB (agmatine ureohydrolase) in Escherichia coliQ36112962
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Identification of the CRP regulon using in vitro and in vivo transcriptional profilingQ38334770
Development and validation of corynebacterium DNA microarrays.Q39490977
Bacterial flagellaQ39866348
Role of RpoH, a heat shock regulator protein, in Escherichia coli carbon starvation protein synthesis and survivalQ39940925
Nucleotide sequence of the FNR-regulated fumarase gene (fumB) of Escherichia coli K-12.Q39949362
Analysis of gene expression in Escherichia coli in response to changes of growth-limiting nutrient in chemostat culturesQ40743914
Regulatory network of Escherichia coli: consistency between literature knowledge and microarray profiles.Q40830309
rRNA transcription and growth rate-dependent regulation of ribosome synthesis in Escherichia coliQ41199643
Structural and functional relationships between fumarase and aspartase. Nucleotide sequences of the fumarase (fumC) and aspartase (aspA) genes of Escherichia coli K12.Q41852075
Selective regulation of ptsG expression by Fis. Formation of either activating or repressing nucleoprotein complex in response to glucoseQ42437159
Integration of three signals at the Escherichia coli nrf promoter: a role for Fis protein in catabolite repressionQ42660708
An analysis of multifactorial influences on the transcriptional control of ompF and ompC porin expression under nutrient limitationQ43793557
Global expression profiling of acetate-grown Escherichia coliQ43869546
Production of abnormal proteins in E. coli stimulates transcription of lon and other heat shock genesQ44169020
Induction of a heat shock-like response by unfolded protein in Escherichia coli: dependence on protein level not protein degradationQ44653732
Global transcriptional programs reveal a carbon source foraging strategy by Escherichia coliQ45261028
DNA microloops and microdomains: a general mechanism for transcription activation by torsional transmissionQ47923319
Transcriptional regulation of the proton translocating NADH dehydrogenase genes (nuoA-N) of Escherichia coli by electron acceptors, electron donors and gene regulatorsQ48074225
Modular analysis of the transcriptional regulatory network of E. coli.Q48500640
Differential regulation of multiple overlapping promoters in flagellar class II operons in Escherichia coli.Q54583862
The pdhR-aceEF-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex.Q54636586
Phylogenetic distribution of DNA-binding transcription factors in bacteria and archaeaQ57838788
Growth phase-dependent regulation of nuoA-N expression in Escherichia coli K-12 by the Fis protein: upstream binding sites and bioenergetic significanceQ73340661
CspD, a novel DNA replication inhibitor induced during the stationary phase in Escherichia coliQ73647929
CRP modulates fis transcription by alternate formation of activating and repressing nucleoprotein complexesQ73694471
Expression of ptsG, the gene for the major glucose PTS transporter in Escherichia coli, is repressed by Mlc and induced by growth on glucoseQ77394548
P921main subjectEscherichia coliQ25419
glucoseQ37525
P304page(s)53
P577publication date2007-06-08
P1433published inBMC MicrobiologyQ15759430
P1476titleIdentification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli
P478volume7

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