Global similarity and local divergence in human and mouse gene co-expression networks

scientific article published on 12 September 2006

Global similarity and local divergence in human and mouse gene co-expression networks is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1040013706
P356DOI10.1186/1471-2148-6-70
P932PMC publication ID1601971
P698PubMed publication ID16968540
P5875ResearchGate publication ID6821571

P50authorEugene KooninQ3699974
Leonardo Mariño-RamírezQ50419550
Olivier BodenreiderQ51753485
P2093author name stringI King Jordan
Panayiotis Tsaparas
P2860cites workAn automated method for finding molecular complexes in large protein interaction networksQ21284295
Gene ontology: tool for the unification of biologyQ23781406
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
A gene atlas of the mouse and human protein-encoding transcriptomesQ24568043
The functional landscape of mouse gene expressionQ24794985
A neutral model of transcriptome evolutionQ24796827
Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networksQ24817215
Stable evolutionary signal in a yeast protein interaction networkQ25255720
Emergence of Scaling in Random NetworksQ27037290
Network biology: understanding the cell's functional organizationQ27861027
Collective dynamics of 'small-world' networksQ27861064
The UCSC Genome Browser DatabaseQ27861125
Statistical methods for detecting molecular adaptationQ28140163
Evolution at two levels in humans and chimpanzeesQ28141105
Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotationQ28183589
Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiaeQ28203878
Repetitive and Non-Repetitive DNA Sequences and a Speculation on the Origins of Evolutionary NoveltyQ28250804
Gene Regulation for Higher Cells: A TheoryQ28256064
Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzeesQ28270561
Large-scale analysis of the human and mouse transcriptomesQ29547360
BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networksQ29547427
Rapid divergence in expression between duplicate genes inferred from microarray dataQ30748127
Scale-free networks in biology: new insights into the fundamentals of evolution?Q30809643
Divergence in the spatial pattern of gene expression between human duplicate genesQ33680514
Rapid evolution of male reproductive genes in the descent of man.Q33888839
Evolutionary dynamics of plant R-genesQ33952866
Scale invariance in biology: coincidence or footprint of a universal mechanism?Q34276653
Genomic analysis of regulatory network dynamics reveals large topological changesQ34348943
The neutral theory in the genomic era.Q34420764
Revisiting "scale-free" networksQ34451081
Coevolution of gene expression among interacting proteinsQ35323681
Evolutionary significance of gene expression divergenceQ35768160
Evolutionary dynamics of prokaryotic transcriptional regulatory networksQ44136796
Evolutionary conservation of expression profiles between human and mouse orthologous genesQ51960332
Rewiring of the Yeast Transcriptional Network Through the Evolution of Motif UsageQ58485110
Incongruent expression profiles between human and mouse orthologous genes suggest widespread neutral evolution of transcription controlQ79984606
Conservation and coevolution in the scale-free human gene coexpression networkQ80392034
Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolutionQ82744702
P4510describes a project that usesCytoscapeQ3699942
P407language of work or nameEnglishQ1860
P304page(s)70
P577publication date2006-09-12
P1433published inBMC Evolutionary BiologyQ13418959
P1476titleGlobal similarity and local divergence in human and mouse gene co-expression networks
P478volume6

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cites work (P2860)
Q35847610A comparison of human and mouse gene co-expression networks reveals conservation and divergence at the tissue, pathway and disease levels
Q33528306A general co-expression network-based approach to gene expression analysis: comparison and applications
Q33372098A genomewide functional network for the laboratory mouse
Q30656594A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa
Q37384974Boolean implication networks derived from large scale, whole genome microarray datasets
Q34014323Characterization and comparison of the tissue-related modules in human and mouse
Q37033001Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes
Q46257071Comparative analysis of weighted gene co-expression networks in human and mouse
Q34272329Comparison of low and high dose ionising radiation using topological analysis of gene coexpression networks.
Q38882849Comparison of the general co-expression landscapes between human and mouse
Q36022309Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation
Q24594789Constraints and plasticity in genome and molecular-phenome evolution
Q31134525Construction, visualisation, and clustering of transcription networks from microarray expression data
Q46529328Differential subnetwork of chemokines/cytokines in human, mouse, and rat brain cells after oxygen-glucose deprivation
Q35195914Differentially Expressed Genes in Major Depression Reside on the Periphery of Resilient Gene Coexpression Networks
Q34005022Divergence of human and mouse brain transcriptome highlights Alzheimer disease pathways
Q33371074Employing conservation of co-expression to improve functional inference
Q36364750From protein-protein interactions to protein co-expression networks: a new perspective to evaluate large-scale proteomic data
Q35842701Gene Expression Profiles in Genetically Different Mice Infected with Toxoplasma gondii: ALDH1A2, BEX2, EGR2, CCL3 and PLAU
Q37236200Gene clusters, molecular evolution and disease: a speculation
Q38808589Help-me signaling: Non-cell autonomous mechanisms of neuroprotection and neurorecovery
Q92543187Identification of Modules With Similar Gene Regulation and Metabolic Functions Based on Co-expression Data
Q37452961Identification of cis-regulatory elements in gene co-expression networks using A-GLAM.
Q35342948Identification of ncRNAs as potential therapeutic targets in multiple sclerosis through differential ncRNA - mRNA network analysis.
Q34987289Lineage-specific transcription factors and the evolution of gene regulatory networks
Q34586391Massive-scale gene co-expression network construction and robustness testing using random matrix theory
Q34759450Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study
Q28472207Meta-analysis of inter-species liver co-expression networks elucidates traits associated with common human diseases
Q33384901Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans
Q34429682Novel genes in Human Asthma Based on a Mouse Model of Allergic Airway Inflammation and Human Investigations.
Q34566225OryzaExpress: an integrated database of gene expression networks and omics annotations in rice
Q37748077Pathogenic mechanisms of allergic inflammation: atopic asthma as a paradigm
Q36834546Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution
Q34065350Repetitive DNA elements, nucleosome binding and human gene expression
Q34100683Systematic identification of functional modules and cis-regulatory elements in Arabidopsis thaliana
Q28600967The drug target genes show higher evolutionary conservation than non-target genes
Q38592069Translation of Pre-Clinical Studies into Successful Clinical Trials for Alzheimer's Disease: What are the Roadblocks and How Can They Be Overcome?

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