| scholarly article | Q13442814 |
| P8978 | DBLP publication ID | journals/ploscb/Peregrin-AlvarezXSP09 |
| P356 | DOI | 10.1371/JOURNAL.PCBI.1000523 |
| P932 | PMC publication ID | 2739439 |
| P698 | PubMed publication ID | 19798435 |
| P5875 | ResearchGate publication ID | 26864803 |
| P50 | author | José M Peregrín-Alvarez | Q37393463 |
| John Parkinson | Q37393560 | ||
| P2093 | author name string | Xuejian Xiong | |
| Chong Su | |||
| P2860 | cites work | Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins | Q21145830 |
| The COG database: an updated version includes eukaryotes | Q21284294 | ||
| Escherichia coli K-12: a cooperatively developed annotation snapshot--2005 | Q22065980 | ||
| Gene ontology: tool for the unification of biology | Q23781406 | ||
| From genomics to chemical genomics: new developments in KEGG | Q24538628 | ||
| Large-scale identification of protein-protein interaction of Escherichia coli K-12 | Q24546090 | ||
| KEGG: Kyoto Encyclopedia of Genes and Genomes | Q24548371 | ||
| DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions | Q24548456 | ||
| Synthetic biology: new engineering rules for an emerging discipline | Q24672399 | ||
| STRING 7--recent developments in the integration and prediction of protein interactions | Q24675384 | ||
| Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae | Q24675519 | ||
| Protein complexes and functional modules in molecular networks | Q24683305 | ||
| Stepwise formation of the bacterial flagellar system | Q24683633 | ||
| EcoCyc: a comprehensive database resource for Escherichia coli | Q24796847 | ||
| Similarities and differences in genome-wide expression data of six organisms | Q24800747 | ||
| Prolinks: a database of protein functional linkages derived from coevolution | Q24801555 | ||
| A single gene network accurately predicts phenotypic effects of gene perturbation in Caenorhabditis elegans. | Q51896048 | ||
| SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli | Q53861487 | ||
| The Escherichia coli ATP‐binding cassette (ABC) proteins | Q54137952 | ||
| Adaptive evolution of bacterial metabolic networks by horizontal gene transfer. | Q54474627 | ||
| Bridging structural biology and genomics: assessing protein interaction data with known complexes | Q57412383 | ||
| Effect of sampling on topology predictions of protein-protein interaction networks | Q58067825 | ||
| Preferential Attachment in the Protein Network Evolution | Q59739522 | ||
| A probabilistic functional network of yeast genes | Q81067438 | ||
| Basic local alignment search tool | Q25938991 | ||
| Discovery of biological networks from diverse functional genomic data | Q27499379 | ||
| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae | Q27860755 | ||
| Network biology: understanding the cell's functional organization | Q27861027 | ||
| A comprehensive two-hybrid analysis to explore the yeast protein interactome | Q27861093 | ||
| Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry | Q27861116 | ||
| Proteome survey reveals modularity of the yeast cell machinery | Q27929510 | ||
| Global landscape of protein complexes in the yeast Saccharomyces cerevisiae | Q27938796 | ||
| Molecular genetic studies of a 10.9-kb operon in Escherichia coli for phosphonate uptake and biodegradation | Q28213251 | ||
| Specificity and stability in topology of protein networks | Q28216450 | ||
| The Database of Interacting Proteins: 2004 update | Q28234998 | ||
| Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs | Q28264442 | ||
| Implementing the iHOP concept for navigation of biomedical literature | Q28275455 | ||
| The protein-protein interaction map of Helicobacter pylori | Q28484787 | ||
| A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data | Q29395063 | ||
| Error and attack tolerance of complex networks | Q29547268 | ||
| A genome-scale metabolic reconstruction for Escherichia coli K-12 MG1655 that accounts for 1260 ORFs and thermodynamic information | Q29615371 | ||
| Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae | Q29615775 | ||
| Interaction network containing conserved and essential protein complexes in Escherichia coli | Q29615776 | ||
| Pathogenic Escherichia coli | Q29616738 | ||
| Making sense of it all: bacterial chemotaxis | Q29617425 | ||
| Dynamic Complex Formation During the Yeast Cell Cycle | Q30002325 | ||
| Organization of FliN subunits in the flagellar motor of Escherichia coli | Q30477115 | ||
| Foundations for engineering biology | Q30482962 | ||
| COmplete GENome Tracking (COGENT): a flexible data environment for computational genomics | Q30813309 | ||
| CoGenT++: an extensive and extensible data environment for computational genomics | Q31010392 | ||
| Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: comparison with high-throughput experimental data | Q31104442 | ||
| Extraction of phylogenetic network modules from the metabolic network | Q33236257 | ||
| Conserved patterns of protein interaction in multiple species | Q33837704 | ||
| FliG subunit arrangement in the flagellar rotor probed by targeted cross-linking | Q33937514 | ||
| Modular Evolution of the Respiratory NADH:Ubiquinone Oxidoreductase and the Origin of its Modules | Q34439351 | ||
| A specificity-enhancing factor for the ClpXP degradation machine | Q34511105 | ||
| From the sequence to cell modeling: comprehensive functional genomics in Escherichia coli | Q35648289 | ||
| Bacterial iron sources: from siderophores to hemophores | Q35919884 | ||
| Comparative interactomics | Q36069220 | ||
| Conserved pathways within bacteria and yeast as revealed by global protein network alignment | Q36160907 | ||
| Evolution of the chaperone/usher assembly pathway: fimbrial classification goes Greek | Q36314743 | ||
| Septum enlightenment: assembly of bacterial division proteins | Q36341266 | ||
| Bacteriome.org--an integrated protein interaction database for E. coli | Q36454044 | ||
| Origins and virulence mechanisms of uropathogenic Escherichia coli | Q36998104 | ||
| ATP-binding cassette transporters in Escherichia coli | Q37219044 | ||
| A complex-centric view of protein network evolution | Q37259115 | ||
| Role of the SulB (FtsZ) protein in division inhibition during the SOS response in Escherichia coli: FtsZ stabilizes the inhibitor SulA in maxicells | Q37532513 | ||
| Functional characterization and regulation of gadX, a gene encoding an AraC/XylS-like transcriptional activator of the Escherichia coli glutamic acid decarboxylase system | Q39679110 | ||
| Gene expression profiling of the pH response in Escherichia coli | Q39680649 | ||
| HGT-DB: a database of putative horizontally transferred genes in prokaryotic complete genomes | Q39790145 | ||
| Murein segregation in Escherichia coli | Q39845464 | ||
| DEG: a database of essential genes | Q40403112 | ||
| Molecular and structural aspects of fimbriae biosynthesis and assembly in Escherichia coli | Q41209895 | ||
| Evolution of protein complexes by duplication of homomeric interactions | Q41955358 | ||
| Assembly of an MCP receptor, CheW, and kinase CheA complex in the bacterial chemotaxis signal transduction pathway | Q42016227 | ||
| The essential peptidoglycan glycosyltransferase MurG forms a complex with proteins involved in lateral envelope growth as well as with proteins involved in cell division in Escherichia coli | Q42912642 | ||
| A physical and functional interaction between Escherichia coli FtsK and topoisomerase IV. | Q44562058 | ||
| P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
| P6216 | copyright status | copyrighted | Q50423863 |
| P4510 | describes a project that uses | Cytoscape | Q3699942 |
| P433 | issue | 10 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| P304 | page(s) | e1000523 | |
| P577 | publication date | 2009-10-01 | |
| P1433 | published in | PLOS Computational Biology | Q2635829 |
| P1476 | title | The Modular Organization of Protein Interactions in Escherichia coli | |
| P478 | volume | 5 |
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| Q33351258 | Bacterial protein interaction networks: puzzle stones from solved complex structures add to a clearer picture |
| Q44998219 | Border control--a membrane-linked interactome of Arabidopsis |
| Q46143407 | C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks |
| Q36094538 | Cell-free Determination of Binary Complexes That Comprise Extended Protein-Protein Interaction Networks of Yersinia pestis. |
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| Q31090499 | Convergent evolution of modularity in metabolic networks through different community structures |
| Q35102075 | Corbi: a new R package for biological network alignment and querying |
| Q34257026 | Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing |
| Q36480414 | Genome reduction promotes increase in protein functional complexity in bacteria |
| Q34845890 | Genome-scale co-evolutionary inference identifies functions and clients of bacterial Hsp90 |
| Q36432222 | Global network alignment using multiscale spectral signatures |
| Q46226848 | Graphlet-based measures are suitable for biological network comparison |
| Q58768175 | Grasping frequent subgraph mining for bioinformatics applications |
| Q42848293 | HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks |
| Q35678726 | Identification of Candidate Adherent-Invasive E. coli Signature Transcripts by Genomic/Transcriptomic Analysis |
| Q31152525 | Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources |
| Q43467712 | Integrative network alignment reveals large regions of global network similarity in yeast and human |
| Q34407774 | Interplay of gene expression noise and ultrasensitive dynamics affects bacterial operon organization. |
| Q40813422 | Metabolic and transcriptional response to cofactor perturbations in Escherichia coli. |
| Q34373987 | Metagenomic annotation networks: construction and applications |
| Q35891795 | Metatranscriptomic analysis of diverse microbial communities reveals core metabolic pathways and microbiome-specific functionality. |
| Q38056561 | Modeling regulatory networks to understand plant development: small is beautiful. |
| Q39429335 | ModuleAlign: module-based global alignment of protein-protein interaction networks |
| Q38099521 | PheNetic: network-based interpretation of unstructured gene lists in E. coli |
| Q28481505 | Prediction and Analysis of the Protein Interactome in Pseudomonas aeruginosa to Enable Network-Based Drug Target Selection |
| Q34045874 | Prediction and characterization of protein-protein interaction network in Bacillus licheniformis WX-02. |
| Q35105693 | Quantitative genome-wide genetic interaction screens reveal global epistatic relationships of protein complexes in Escherichia coli |
| Q34116959 | RegnANN: Reverse Engineering Gene Networks using Artificial Neural Networks |
| Q35849677 | RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq. |
| Q38391425 | Slow poisoning and destruction of networks: edge proximity and its implications for biological and infrastructure networks. |
| Q35111147 | Systems-based analysis of the Sarcocystis neurona genome identifies pathways that contribute to a heteroxenous life cycle |
| Q35811177 | The effect of chaperonin buffering on protein evolution |
| Q33654048 | The extinction dynamics of bacterial pseudogenes. |
| Q46185374 | The molecular diversity of adaptive convergence. |
| Q30385368 | Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states |
| Q42375672 | Vicus: Exploiting local structures to improve network-based analysis of biological data. |
| Q37947122 | Vignettes: Models in Absentia |
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