The molecular diversity of adaptive convergence.

scientific article

The molecular diversity of adaptive convergence. is …
instance of (P31):
scholarly articleQ13442814

External links are
P819ADS bibcode2012Sci...335..457T
P356DOI10.1126/SCIENCE.1212986
P698PubMed publication ID22282810
P5875ResearchGate publication ID221782538

P50authorAnthony D LongQ73046663
Olivier TenaillonQ89436407
Brandon S GautQ90045858
P2093author name stringAlbert F Bennett
Alejandra Rodríguez-Verdugo
Pamela McDonald
Rebecca L Gaut
P2860cites workNegative epistasis between beneficial mutations in an evolving bacterial populationQ44010374
Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).Q45331719
Rapid evolution in response to high-temperature selectionQ46330296
Causes and evolutionary significance of genetic convergence.Q51624140
Experimental evolution reveals natural selection on standing genetic variation.Q52695892
Transposable elements as mutator genes in evolutionQ59084250
Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 GenerationsQ22066139
Genome-wide analysis of a long-term evolution experiment with DrosophilaQ22122175
Genome evolution and adaptation in a long-term experiment with Escherichia coliQ22122199
Modularity and community structure in networksQ24548534
EcoCyc: a comprehensive database of Escherichia coli biologyQ24612081
An allosteric mechanism of Rho-dependent transcription terminationQ24623670
Basic local alignment search toolQ25938991
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR productsQ27860842
T-Coffee: A novel method for fast and accurate multiple sequence alignmentQ27860999
SOAP: short oligonucleotide alignment programQ28266228
A method for estimating the numbers of synonymous and nonsynonymous substitutions per siteQ28274995
The Modular Organization of Protein Interactions in Escherichia coliQ28476170
SSAHA: a fast search method for large DNA databasesQ29614458
Darwinian evolution can follow only very few mutational paths to fitter proteinsQ29616042
The structure of bacterial RNA polymerase in complex with the essential transcription elongation factor NusAQ30490485
Libsequence: a C++ class library for evolutionary genetic analysis.Q33195216
Understanding the evolutionary fate of finite populations: the dynamics of mutational effectsQ33281050
Co-regulation of metabolic genes is better explained by flux coupling than by network distanceQ33316819
Evaluation of GO-based functional similarity measures using S. cerevisiae protein interaction and expression profile dataQ33382890
Structure, assembly and regulation of expression of capsules in Escherichia coliQ33592585
RNA polymerase elongation factorsQ33640968
Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virusQ33926816
Role of CspC and CspE in regulation of expression of RpoS and UspA, the stress response proteins in Escherichia coliQ33995553
Transition from positive to neutral in mutation fixation along with continuing rising fitness in thermal adaptive evolution.Q34220343
RNA polymerase mutants found through adaptive evolution reprogram Escherichia coli for optimal growth in minimal mediaQ34377515
The coupon collector and the suppressor mutation: estimating the number of compensatory mutations by maximum likelihood.Q34576506
Genetic architecture of thermal adaptation in Escherichia coliQ34614487
Tests of parallel molecular evolution in a long-term experiment with Escherichia coliQ34694847
Diminishing returns epistasis among beneficial mutations decelerates adaptationQ39954065
Phenotypic connections in surprising placesQ41018163
On measuring selection in experimental evolution.Q42076622
RodZ, a new player in bacterial cell morphogenesisQ42154769
P433issue6067
P407language of work or nameEnglishQ1860
P921main subjectmolecular diversityQ129259387
P304page(s)457-461
P577publication date2012-01-01
P1433published inScienceQ192864
P1476titleThe molecular diversity of adaptive convergence
P478volume335

Reverse relations

cites work (P2860)
Q47172267"Evolution of a dominant natural isolate of Escherichia coli in the human gut over a year suggests a neutral evolution with reduced effective population size".
Q34528722A Comprehensive, CRISPR-based Functional Analysis of Essential Genes in Bacteria
Q41658937A Model for Designing Adaptive Laboratory Evolution Experiments
Q34791987A case of adaptation through a mutation in a tandem duplication during experimental evolution in Escherichia coli
Q33595748A passive mutualistic interaction promotes the evolution of spatial structure within microbial populations
Q36810635A population-based experimental model for protein evolution: effects of mutation rate and selection stringency on evolutionary outcomes.
Q35261713A recurrent regulatory change underlying altered expression and Wnt response of the stickleback armor plates gene EDA.
Q51826213A shift from magnitude to sign epistasis during adaptive evolution of a bacterial social trait.
Q57213572A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila
Q57793787ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation
Q41970825Accelerated gene evolution through replication-transcription conflicts
Q42371063Accumulation of Deleterious Mutations During Bacterial Range Expansions
Q45063009Acid Evolution of Escherichia coli K-12 Eliminates Amino Acid Decarboxylases and Reregulates Catabolism.
Q37263496Adaptation of Enterococcus faecalis to daptomycin reveals an ordered progression to resistance
Q37685579Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution
Q35175854Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state
Q36596823Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria
Q90296006Adaptation, chance, and history in experimental evolution reversals to unicellularity
Q33659055Adaptive Laboratory Evolution of Antibiotic Resistance Using Different Selection Regimes Lead to Similar Phenotypes and Genotypes
Q46093243Adaptive Mutations in RNA Polymerase and the Transcriptional Terminator Rho Have Similar Effects on Escherichia coli Gene Expression.
Q38118393Adaptive laboratory evolution -- principles and applications for biotechnology
Q64106194Adaptive laboratory evolution of a genome-reduced Escherichia coli
Q88182869Altered access to beneficial mutations slows adaptation and biases fixed mutations in diploids
Q38201031Analyzing the genomic variation of microbial cell factories in the era of "New Biotechnology".
Q37421974Ancestral population reconstitution from isofemale lines as a tool for experimental evolution
Q89874524Ancient balancing selection on heterocyst function in a cosmopolitan cyanobacterium
Q34280527Ancient homology underlies adaptive mimetic diversity across butterflies
Q89637612Antagonistic pleiotropy conceals molecular adaptations in changing environments
Q51544118Antibiotic resistance and stress in the light of Fisher's model.
Q52577417Assessing the benefits of horizontal gene transfer by laboratory evolution and genome sequencing.
Q30558527Bacteriophage vB_EcoM_FV3: a new member of "rV5-like viruses".
Q64112083Bayesian Detection of Convergent Rate Changes of Conserved Noncoding Elements on Phylogenetic Trees
Q50926101Biosensor-driven adaptive laboratory evolution of l-valine production in Corynebacterium glutamicum.
Q86832377Bypass of genetic constraints during mutator evolution to antibiotic resistance
Q28082810Can the experimental evolution programme help us elucidate the genetic basis of adaptation in nature?
Q26767415Cancer Evolution and the Limits of Predictability in Precision Cancer Medicine
Q28727500Cancer in light of experimental evolution
Q64064301Capacity for survival in global warming: Adaptation of mesophiles to the temperature upper limit
Q51122897Chaos and unpredictability in evolution.
Q36596557Characterization of acetic acid-detoxifying Escherichia coli evolved under phosphate starvation conditions
Q33887661Characterizing the molecular basis of attenuation of Marek's disease virus via in vitro serial passage identifies de novo mutations in the helicase-primase subunit gene UL5 and other candidates associated with reduced virulence.
Q54251489Clonal interference can cause wavelet-like oscillations of multilocus linkage disequilibrium.
Q37272922Comparative analyses identify the contributions of exotic donors to disease resistance in a barley experimental population.
Q44030517Comparative genomics and transcriptomics analysis of experimentally evolved Escherichia coli MC1000 in complex environments
Q41857177Comparative genomics provides insight into maize adaptation in temperate regions.
Q38178893Constraint-based models predict metabolic and associated cellular functions.
Q42204146Contribution of silent mutations to thermal adaptation of RNA bacteriophage Qβ
Q39357322Convergence in organ size but not energy metabolism enzyme activities among wild Lake Whitefish (Coregonus clupeaformis) species pairs
Q28551346Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level
Q28296812Convergent evolution of hyperswarming leads to impaired biofilm formation in pathogenic bacteria
Q35549129Convergent evolution of the genomes of marine mammals
Q47397497Convergent selection pressures drive the evolution of rhodopsin kinetics at high altitudes via nonparallel mechanisms.
Q28082095Costs of antibiotic resistance - separating trait effects and selective effects
Q34992854Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq
Q57814102Determinants of selection in yeast evolved by genome shuffling
Q98895036Developing rapid growing Bacillus subtilis for improved biochemical and recombinant protein production
Q41507951Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast
Q34082927Different tradeoffs result from alternate genetic adaptations to a common environment
Q90042482Diffusion-driven enhancement of the antibiotic resistance selection window
Q51300318Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations.
Q60947411Does the Genomic Landscape of Species Divergence in Beans Coerce Parallel Signatures of Adaptation and Domestication?
Q38403177Dynamics and genetic diversification of Escherichia coli during experimental adaptation to an anaerobic environment
Q36574555Dynamics of Dark-Fly Genome Under Environmental Selections
Q30679608Ecological genomics of local adaptation
Q60503746Effective models and the search for quantitative principles in microbial evolution
Q26783005Elucidating the molecular architecture of adaptation via evolve and resequence experiments
Q38218962Empirical fitness landscapes and the predictability of evolution
Q34313206Engineering ecosystems and synthetic ecologies
Q51463292Epistasis and allele specificity in the emergence of a stable polymorphism in Escherichia coli.
Q39162611Epistasis and the Evolution of Antimicrobial Resistance
Q54304014Epistatic interactions determine the mutational pathways and coexistence of lineages in clonal Escherichia coli populations.
Q92215133Escherichia coli adaptation and response to exposure to heavy atmospheric pollution
Q54204592Escherichia coli as a host for metabolic engineering.
Q90064873Estimating the predictability of cancer evolution
Q46723730Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico).
Q46241227Evolution as an ecosystem process: insights from genomics.
Q41839414Evolution by flight and fight: diverse mechanisms of adaptation by actively motile microbes
Q28550649Evolution of E. coli on [U-13C]Glucose Reveals a Negligible Isotopic Influence on Metabolism and Physiology
Q34596522Evolution of Escherichia coli rifampicin resistance in an antibiotic-free environment during thermal stress
Q34201864Evolution of Escherichia coli to 42 °C and subsequent genetic engineering reveals adaptive mechanisms and novel mutations
Q39322429Evolution of bacterial virulence
Q36293883Evolution of protein-protein interaction networks in yeast.
Q40502218Evolutionary Genomics.
Q28710050Evolutionary biology for the 21st century
Q48183271Evolutionary convergence in experimental Pseudomonas populations
Q61811295Evolutionary dynamics of bacteria in the gut microbiome within and across hosts
Q89703616Evolutionary genomics can improve prediction of species' responses to climate change
Q51461404Evolutionary history and genetic parallelism affect correlated responses to evolution.
Q92153252Experimental Challenges for Reduced Genomes: The Cell Model Escherichia coli
Q57174769Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution
Q90345321Experimental Studies of Evolutionary Dynamics in Microbes
Q38683209Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations
Q52340379Experimental evolution of diverse Escherichia coli metabolic mutants identifies genetic loci for convergent adaptation of growth rate.
Q99551370Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris
Q36895756Experimental interrogation of the path dependence and stochasticity of protein evolution using phage-assisted continuous evolution
Q38109292Exploring the costs of horizontal gene transfer.
Q35780684Extent of QTL Reuse During Repeated Phenotypic Divergence of Sympatric Threespine Stickleback
Q46126018Fast growth phenotype of E. coli K-12 from adaptive laboratory evolution does not require intracellular flux rewiring
Q34497933Fine-tuning citrate synthase flux potentiates and refines metabolic innovation in the Lenski evolution experiment.
Q36410897First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes
Q28607448Fitness Trade-Offs Determine the Role of the Molecular Chaperonin GroEL in Buffering Mutations
Q34302180Fitness landscape transformation through a single amino acid change in the rho terminator
Q26830798From systems to structure: bridging networks and mechanism
Q36586464Functional evolution of an anthocyanin pathway enzyme during a flower color transition
Q35544402Gene acquisition convergence between entomopoxviruses and baculoviruses
Q54202540Genetic Adaptation to Growth Under Laboratory Conditions in Escherichia coli and Salmonella enterica.
Q64243934Genetic redundancy fuels polygenic adaptation in Drosophila
Q28651650Genome dynamics during experimental evolution
Q47567388Genome-Wide Analysis of Starvation-Selected Drosophila melanogaster-A Genetic Model of Obesity
Q31037384Genome-environment association study suggests local adaptation to climate at the regional scale in Fagus sylvatica.
Q42738785Genome-wide analysis captures the determinants of the antibiotic cross-resistance interaction network.
Q34680352Genome-wide analysis of long-term evolutionary domestication in Drosophila melanogaster
Q90049157Genome-wide analysis reveals molecular convergence underlying domestication in 7 bird and mammals
Q36219845Genome-wide mapping of mutations at single-nucleotide resolution for protein, metabolic and genome engineering.
Q104581398Genomic Convergence in the Adaptation to Extreme Environments
Q90289542Genomic Insights into the Adaptive Convergent Evolution
Q31150861Genomic Trajectories to Desiccation Resistance: Convergence and Divergence Among Replicate Selected Drosophila Lines
Q41944661Genomic basis of evolutionary change: evolving immunity
Q64267970Genomic correlates of extraintestinal infection are linked with changes in cell morphology in Campylobacter jejuni
Q28082330Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments
Q49679448Genomics of Adaptation Depends on the Rate of Environmental Change in Experimental Yeast Populations.
Q33590796Genomics of Parallel Experimental Evolution in Drosophila
Q33836661Genomics of rapid adaptation to antibiotics: convergent evolution and scalable sequence amplification
Q45003436Genotype-by-environment interactions due to antibiotic resistance and adaptation in Escherichia coli
Q36860964Global Rebalancing of Cellular Resources by Pleiotropic Point Mutations Illustrates a Multi-scale Mechanism of Adaptive Evolution
Q42518786Global relationships in fluctuation and response in adaptive evolution
Q36084626Growth phase-specific evolutionary benefits of natural transformation in Acinetobacter baylyi
Q100737041Heat-responsive and time-resolved transcriptome and metabolome analyses of Escherichia coli uncover thermo-tolerant mechanisms
Q55285004High mutation rates limit evolutionary adaptation in Escherichia coli.
Q36160359High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations.
Q102379151High-throughput laboratory evolution reveals evolutionary constraints in Escherichia coli
Q50080966Highly Expressed Genes Are Preferentially Co-Opted for C4 Photosynthesis
Q43163360History, chance and selection during phenotypic and genomic experimental evolution: replaying the tape of life at different levels
Q41292956Hitchhiking and epistasis give rise to cohort dynamics in adapting populations
Q58782393Hotspot mutations and ColE1 plasmids contribute to the fitness of Salmonella Heidelberg in poultry litter
Q60938695How adaptive evolution reshapes metabolism to improve fitness: recent advances and future outlook
Q34571328How and why cells grow as rods
Q26853716How does adaptation sweep through the genome? Insights from long-term selection experiments
Q88011723How to Build a Bacterial Cell: MreB as the Foreman of E. coli Construction
Q92283288IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations
Q90164326Identification of Loci Associated with Enhanced Virulence in Spodoptera litura Nucleopolyhedrovirus Isolates Using Deep Sequencing
Q58697126Identifying Drivers of Parallel Evolution: A Regression Model Approach
Q30872404Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Q38902848Implications of evolutionary engineering for growth and recombinant protein production in methanol-based growth media in the yeast Pichia pastoris.
Q57165484Increased biofilm formation due to high-temperature adaptation in marine Roseobacter
Q51002018Initial Molecular-Level Response to Artificial Selection for Increased Aerobic Metabolism Occurs Primarily through Changes in Gene Expression.
Q46753712Interactions between genotype and environment drive the metabolic phenotype within Escherichia coli isolates
Q58609065Isolation of A Novel Phage Representing A New Phage Lineage and Characterization of Its Endolysin
Q45345601Key Metabolites and Mechanistic Changes for Salt Tolerance in an Experimentally Evolved Sulfate-Reducing Bacterium, Desulfovibrio vulgaris.
Q33560343Laboratory selection quickly erases historical differentiation
Q36153069Local adaptation (mostly) remains local: reassessing environmental associations of climate-related candidate SNPs in Arabidopsis halleri.
Q43231261Long-term diversity and genome adaptation of Acinetobacter baylyi in a minimal-medium chemostat
Q40567914Love the one you're with: replicate viral adaptations converge on the same phenotypic change
Q35105723Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations.
Q92141659Microbial Experimental Evolution - a proving ground for evolutionary theory and a tool for discovery
Q34091835Microbial communities evolve faster in extreme environments
Q38055376Microbial evolution in vivo and in silico: methods and applications.
Q39169158Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity
Q38759067Microdiversity shapes the traits, niche space, and biogeography of microbial taxa.
Q33730850Millstone: software for multiplex microbial genome analysis and engineering
Q33590430Modeling Tumor Clonal Evolution for Drug Combinations Design
Q64232908Modular epistasis and the compensatory evolution of gene deletion mutants
Q93011563Modulation of Quorum Sensing as an Adaptation to Nodule Cell Infection during Experimental Evolution of Legume Symbionts
Q111629301Molecular bases for parallel evolution of translucent bracts in an alpine “glasshouse” plant Rheum alexandrae (Polygonaceae)
Q30882294Molecular proxies for climate maladaptation in a long-lived tree (Pinus pinaster Aiton, Pinaceae).
Q30000694Multi-locus analysis of genomic time series data from experimental evolution
Q35863603Multifactorial Competition and Resistance in a Two-Species Bacterial System
Q43245159Multiple Resistance at No Cost: Rifampicin and Streptomycin a Dangerous Liaison in the Spread of Antibiotic Resistance.
Q35210627Multiple phenotypic changes associated with large-scale horizontal gene transfer
Q36014236Mutation-Driven Divergence and Convergence Indicate Adaptive Evolution of the Intracellular Human-Restricted Pathogen, Bartonella bacilliformis
Q47613442Mutation-Driven Parallel Evolution during Viral Adaptation
Q53158429Mutational signatures indicative of environmental stress in bacteria.
Q34550797Mutational spectrum drives the rise of mutator bacteria
Q34679960Mutations in global regulators lead to metabolic selection during adaptation to complex environments
Q36676963Natural genome diversity of AI-2 quorum sensing in Escherichia coli: conserved signal production but labile signal reception
Q31039375Network-Based Analysis of eQTL Data to Prioritize Driver Mutations
Q46527792Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations.
Q37997288New insights into bacterial adaptation through in vivo and in silico experimental evolution
Q58794260Non-cyp51A Azole-Resistant Aspergillus fumigatus Isolates with Mutation in HMG-CoA Reductase
Q54242442Parallel Evolution of High-Level Aminoglycoside Resistance in Escherichia coli Under Low and High Mutation Supply Rates.
Q36129774Parallel Mutations Result in a Wide Range of Cooperation and Community Consequences in a Two-Species Bacterial Consortium
Q28595783Parallel and Divergent Evolutionary Solutions for the Optimization of an Engineered Central Metabolism in Methylobacterium extorquens AM1
Q33645881Parallel developmental genetic features underlie stickleback gill raker evolution
Q57135429Parallel genetic adaptation across environments differing in mode of growth or resource availability
Q36198245Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeast
Q90595302Parallel genomic architecture underlies repeated sexual signal divergence in Hawaiian Laupala crickets
Q55078002Parallels between experimental and natural evolution of legume symbionts.
Q28608029Past climate change on Sky Islands drives novelty in a core developmental gene network and its phenotype
Q92568694Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations
Q46797589Patterns of variation during adaptation in functionally linked loci
Q34358875Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations
Q64251970Phage Reduce Stability for Regaining Infectivity during Antagonistic Coevolution with Host Bacterium
Q40898690Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast
Q35762881Phenotypic convergence in bacterial adaptive evolution to ethanol stress
Q98225901Phenotypic responses to temperature in the ciliate Tetrahymena thermophila
Q54226446Population size changes and selection drive patterns of parallel evolution in a host-virus system.
Q38798070Predictability and parallelism of multi-trait adaptation
Q33680845Predictable phenotypic, but not karyotypic, evolution of populations with contrasting initial history
Q54295384Predicting evolution.
Q60916118Predicting mutational routes to new adaptive phenotypes
Q51249955Predicting the basis of convergent evolution.
Q34596567Predicting the evolution of antibiotic resistance
Q42630520Prediction of Cross-resistance and Collateral Sensitivity by Gene Expression profiles and Genomic Mutations
Q34454311Prediction of antibiotic resistance by gene expression profiles.
Q35079781Properties of selected mutations and genotypic landscapes under Fisher's geometric model.
Q58599703Proteome evolution under non-substitutable resource limitation
Q47898799Quantifying Selection with Pool-Seq Time Series Data
Q30373007RNA chaperones buffer deleterious mutations in E. coli.
Q39436445ROS mediated selection for increased NADPH availability in Escherichia coli
Q101216896Rampant loss of social traits during domestication of a Bacillus subtilis natural isolate
Q42227289Rapid Genetic Adaptation during the First Four Months of Survival under Resource Exhaustion
Q39587390Rapid divergence and convergence of life-history in experimentally evolved Drosophila melanogaster
Q100465126Rapid evolution destabilizes species interactions in a fluctuating environment
Q59336057Recombination-independent rapid convergent evolution of the gastric pathogen Helicobacter pylori
Q47142889Refactoring the Genetic Code for Increased Evolvability
Q26774050Replaying the tape of life in the twenty-first century
Q34504896Replaying the tape of life: quantification of the predictability of evolution
Q37545723Revealing the genetic basis of natural bacterial phenotypic divergence.
Q92982207Scalable, Continuous Evolution of Genes at Mutation Rates above Genomic Error Thresholds
Q36269559Seeking Goldilocks During Evolution of Drug Resistance
Q28602407Selection on different genes with equivalent functions: the convergence story told by Hox genes along the evolution of aquatic mammalian lineages
Q89637630Sex alters molecular evolution in diploid experimental populations of S. cerevisiae
Q34154596Short-term differential adaptation to anaerobic stress via genomic mutations by Escherichia coli strains K-12 and B lacking alcohol dehydrogenase
Q44208060Sign epistasis limits evolutionary trade-offs at the confluence of single- and multi-carbon metabolism in Methylobacterium extorquens AM1.
Q52897789Signatures of local adaptation in lowland and highland teosintes from whole-genome sequencing of pooled samples.
Q36504175Small changes in enzyme function can lead to surprisingly large fitness effects during adaptive evolution of antibiotic resistance
Q37695988Specificity of genome evolution in experimental populations of Escherichia coli evolved at different temperatures
Q39137548Standing genetic variation drives repeatable experimental evolution in outcrossing populations of Saccharomyces cerevisiae
Q52605047Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.
Q38156504Strategies for the multiplex mapping of genes to traits
Q41023000Stress-response balance drives the evolution of a network module and its host genome
Q37184562Structural systems biology evaluation of metabolic thermotolerance in Escherichia coli
Q35907808Synonymous and nonsynonymous distances help untangle convergent evolution and recombination
Q99731167Synthetic reconstruction of extreme high hydrostatic pressure resistance in Escherichia coli
Q35692242Tandem Duplications and the Limits of Natural Selection in Drosophila yakuba and Drosophila simulans
Q34535938Tempo and mode of genome evolution in a 50,000-generation experiment
Q52609532The Antarctic sea ice alga Chlamydomonas sp. ICE-L provides insights into adaptive patterns of chloroplast evolution.
Q90729739The Genomic Basis for Short-Term Evolution of Environmental Adaptation in Maize
Q36009835The Genomic Basis of Evolutionary Innovation in Pseudomonas aeruginosa.
Q36291382The Genomic Impacts of Drift and Selection for Hybrid Performance in Maize
Q51531906The Loci of repeated evolution: a catalog of genetic hotspots of phenotypic variation.
Q35675296The Molecular and Genetic Basis of Repeatable Coevolution between Escherichia coli and Bacteriophage T3 in a Laboratory Microcosm
Q41773166The Rho Termination Factor of Clostridium botulinum Contains a Prion-Like Domain with a Highly Amyloidogenic Core.
Q38689208The Utility of Fisher's Geometric Model in Evolutionary Genetics
Q38630215The adaptive landscape of wildtype and glycosylation-deficient populations of the industrial yeast Pichia pastoris.
Q39450951The competition between simple and complex evolutionary trajectories in asexual populations.
Q34277589The conserved nhaAR operon is drastically divergent between B2 and non-B2 Escherichia coli and is involved in extra-intestinal virulence
Q34342693The convergent evolution of blue iris pigmentation in primates took distinct molecular paths.
Q34893085The cost of antibiotic resistance depends on evolutionary history in Escherichia coli.
Q30235995The coupon collector urn model with unequal probabilities in ecology and evolution
Q38399916The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection
Q39030319The effect of selection environment on the probability of parallel evolution.
Q92544990The emergence of adaptive laboratory evolution as an efficient tool for biological discovery and industrial biotechnology
Q35544067The enduring utility of continuous culturing in experimental evolution
Q35579831The evolutionarily stable distribution of fitness effects
Q53734019The fitness costs and benefits of antibiotic resistance in drug-free microenvironments encountered in the human body.
Q38150710The genetic causes of convergent evolution
Q53743078The genomic basis of adaptation to the fitness cost of rifampicin resistance in Pseudomonas aeruginosa.
Q35231934The genomic landscape of compensatory evolution
Q88785739The genomic landscape of evolutionary convergence in mammals, birds and reptiles
Q55510467The genomics of adaptation.
Q94599629The hidden chemolithoautotrophic metabolism of Geobacter sulfurreducens uncovered by adaptation to formate
Q34864177The impact of macroscopic epistasis on long-term evolutionary dynamics
Q36245287The multiplicity of divergence mechanisms in a single evolving population
Q35761704The phenotypic signature of adaptation to thermal stress in Escherichia coli
Q98623946The population genetics of pathogenic Escherichia coli
Q37671984The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
Q37612743The predictability of molecular evolution during functional innovation.
Q53107952The probability of genetic parallelism and convergence in natural populations.
Q38726566The role of recombination in evolutionary adaptation of Escherichia coli to a novel nutrient
Q26864257The spectrum of adaptive mutations in experimental evolution
Q53007409The topology of evolutionary novelty and innovation in macroevolution.
Q28652451Thermal and solvent stress cross-tolerance conferred to Corynebacterium glutamicum by adaptive laboratory evolution
Q46138830Thermosensitivity of growth is determined by chaperone-mediated proteome reallocation
Q46298824Thinking big: the tunability of bacterial cell size
Q57825311To mutate or not to mutate: Genetic and epigenetic heterogeneity contribute to bacterial adaptation (comment on DOI 10.1002/bies.201400153)
Q35050923Too much of a good thing: the unique and repeated paths toward copper adaptation
Q42272002Tracking recent adaptive evolution in microbial species using TimeZone
Q48378861Transcription termination factor Rho and microbial phenotypic heterogeneity.
Q42321297Transcriptome-Level Signatures in Gene Expression and Gene Expression Variability during Bacterial Adaptive Evolution
Q34082875Transient Darwinian selection in Salmonella enterica serovar Paratyphi A during 450 years of global spread of enteric fever
Q35787623Unique evolutionary trajectories in repeated adaptation to hydrogen sulphide-toxic habitats of a neotropical fish (Poecilia mexicana).
Q34747829Use of adaptive laboratory evolution to discover key mutations enabling rapid growth of Escherichia coli K-12 MG1655 on glucose minimal medium
Q47165136Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut.
Q40446556What drives parallel evolution?: How population size and mutational variation contribute to repeated evolution.
Q89346241What genomic data can reveal about eco-evolutionary dynamics
Q44740449What paths do advantageous alleles take during short-term evolutionary change?
Q36575453Whole Genome Shotgun Sequencing Shows Selection on Leptospira Regulatory Proteins During in vitro Culture Attenuation
Q34387997Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
Q34288700Widespread signals of convergent adaptation to high altitude in Asia and america
Q54332246[Genetic adaptation of bacteria].