| scholarly article | Q13442814 |
| P50 | author | Michael M Desai | Q83929438 |
| Elizabeth R Jerison | Q84255106 | ||
| P2093 | author name string | Sergey Kryazhimskiy | |
| Daniel P Rice | |||
| P2860 | cites work | Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli | Q22066316 |
| Genome evolution and adaptation in a long-term experiment with Escherichia coli | Q22122199 | ||
| Second-order selection for evolvability in a large Escherichia coli population | Q24635911 | ||
| FLO1 is a variable green beard gene that drives biofilm-like cooperation in budding yeast | Q24655968 | ||
| Fast gapped-read alignment with Bowtie 2 | Q27860699 | ||
| Fast growth increases the selective advantage of a mutation arising recurrently during evolution under metal limitation | Q28476065 | ||
| A framework for variation discovery and genotyping using next-generation DNA sequencing data | Q29547262 | ||
| Darwinian evolution can follow only very few mutational paths to fitter proteins | Q29616042 | ||
| A comprehensive strategy enabling high-resolution functional analysis of the yeast genome. | Q33351293 | ||
| Escherichia coli rpoB mutants have increased evolvability in proportion to their fitness defects | Q33860371 | ||
| Evolvability of an RNA virus is determined by its mutational neighbourhood | Q33914492 | ||
| Epistasis between beneficial mutations and the phenotype-to-fitness Map for a ssDNA virus | Q33926816 | ||
| Permissive secondary mutations enable the evolution of influenza oseltamivir resistance | Q34118992 | ||
| Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populations | Q34358875 | ||
| On the evolution of codon volatility | Q34570073 | ||
| Genetic variation and the fate of beneficial mutations in asexual populations | Q35222738 | ||
| Estimating the per-base-pair mutation rate in the yeast Saccharomyces cerevisiae | Q36391958 | ||
| The cost of gene expression underlies a fitness trade-off in yeast | Q37134524 | ||
| The dynamics of adaptation on correlated fitness landscapes | Q37399576 | ||
| Diminishing returns epistasis among beneficial mutations decelerates adaptation | Q39954065 | ||
| Rates of fitness decline and rebound suggest pervasive epistasis | Q41911214 | ||
| Negative epistasis between beneficial mutations in an evolving bacterial population | Q44010374 | ||
| Long-term dynamics of adaptation in asexual populations | Q45261637 | ||
| The molecular diversity of adaptive convergence. | Q46185374 | ||
| Identification of the heterothallic mutation in HO-endonuclease of S. cerevisiae using HO/ho chimeric genes | Q48070802 | ||
| Experimental tests of the roles of adaptation, chance, and history in evolution. | Q54619014 | ||
| Clonal interference is alleviated by high mutation rates in large populations | Q80018606 | ||
| P433 | issue | 6191 | |
| P407 | language of work or name | English | Q1860 |
| P304 | page(s) | 1519-1522 | |
| P577 | publication date | 2014-06-01 | |
| P1433 | published in | Science | Q192864 |
| P1476 | title | Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity | |
| P478 | volume | 344 |
| Q41658937 | A Model for Designing Adaptive Laboratory Evolution Experiments |
| Q27861944 | A genomic and evolutionary approach reveals non-genetic drug resistance in malaria |
| Q54253302 | Adaptation of Escherichia coli to glucose promotes evolvability in lactose. |
| Q33807670 | Adaptive Roles of SSY1 and SIR3 During Cycles of Growth and Starvation in Saccharomyces cerevisiae Populations Enriched for Quiescent or Nonquiescent Cells |
| Q47587442 | Additive Phenotypes Underlie Epistasis of Fitness Effects |
| Q88182869 | Altered access to beneficial mutations slows adaptation and biases fixed mutations in diploids |
| Q89637612 | Antagonistic pleiotropy conceals molecular adaptations in changing environments |
| Q37173084 | Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness |
| Q38254752 | Beyond genome sequencing: lineage tracking with barcodes to study the dynamics of evolution, infection, and cancer. |
| Q90171624 | Chance and necessity in the pleiotropic consequences of adaptation for budding yeast |
| Q27938036 | Concerted evolution of life stage performances signals recent selection on yeast nitrogen use. |
| Q28603871 | Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria |
| Q28551346 | Convergent Evolution of Hemoglobin Function in High-Altitude Andean Waterfowl Involves Limited Parallelism at the Molecular Sequence Level |
| Q29011147 | Deleterious Passengers in Adapting Populations |
| Q29002206 | Detecting High-Order Epistasis in Nonlinear Genotype-Phenotype Maps |
| Q41507951 | Development of a Comprehensive Genotype-to-Fitness Map of Adaptation-Driving Mutations in Yeast |
| Q53717083 | Diminishing-returns epistasis among random beneficial mutations in a multicellular fungus. |
| Q54219938 | Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory. |
| Q64904134 | Disentangling strictly self-serving mutations from win-win mutations in a mutualistic microbial community. |
| Q51300318 | Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations. |
| Q99418721 | Ecology shapes epistasis in a genotype-phenotype-fitness map for stick insect colour |
| Q60503746 | Effective models and the search for quantitative principles in microbial evolution |
| Q47877246 | Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria. |
| Q26783005 | Elucidating the molecular architecture of adaptation via evolve and resequence experiments |
| Q26852246 | Environmental Epigenetics and a Unified Theory of the Molecular Aspects of Evolution: A Neo-Lamarckian Concept that Facilitates Neo-Darwinian Evolution |
| Q37076828 | Epistasis and the Dynamics of Reversion in Molecular Evolution |
| Q28652130 | Epistasis constrains mutational pathways of hemoglobin adaptation in high-altitude pikas |
| Q89982990 | Epistatic contributions promote the unification of incompatible models of neutral molecular evolution |
| Q53156835 | Epistatic interactions between ancestral genotype and beneficial mutations shape evolvability in Pseudomonas aeruginosa. |
| Q46723730 | Evolution Is an Experiment: Assessing Parallelism in Crop Domestication and Experimental Evolution: (Nei Lecture, SMBE 2014, Puerto Rico). |
| Q37248273 | Evolution of Ecological Diversity in Biofilms of Pseudomonas aeruginosa by Altered Cyclic Diguanylate Signaling |
| Q39675173 | Evolution of sex: Using experimental genomics to select among competing theories |
| Q92879130 | Evolutionary Dynamics in the RNA Bacteriophage Qβ Depends on the Pattern of Change in Selective Pressures |
| Q36242283 | Evolutionary adaptation after crippling cell polarization follows reproducible trajectories |
| Q83227516 | Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle |
| Q90186568 | Evolutionary repair: Changes in multiple functional modules allow meiotic cohesin to support mitosis |
| Q90414037 | Evolving generalists in switching rugged landscapes |
| Q57174769 | Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution |
| Q36289151 | Experimental Evolution of Escherichia coli Harboring an Ancient Translation Protein |
| Q37255898 | Experimental Horizontal Gene Transfer of Methylamine Dehydrogenase Mimics Prevalent Exchange in Nature and Overcomes the Methylamine Growth Constraints Posed by the Sub-Optimal N-Methylglutamate Pathway |
| Q90345321 | Experimental Studies of Evolutionary Dynamics in Microbes |
| Q38683209 | Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations |
| Q39218296 | Exploring genetic suppression interactions on a global scale |
| Q38414823 | Fighting microbial drug resistance: a primer on the role of evolutionary biology in public health |
| Q36410897 | First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes |
| Q51313054 | Fisher's geometric model predicts the effects of random mutations when tested in the wild. |
| Q30985242 | Fitness Inference from Short-Read Data: Within-Host Evolution of a Reassortant H5N1 Influenza Virus |
| Q38639465 | Genetic variation in adaptability and pleiotropy in budding yeast |
| Q28082330 | Genomic investigations of evolutionary dynamics and epistasis in microbial evolution experiments |
| Q49679448 | Genomics of Adaptation Depends on the Rate of Environmental Change in Experimental Yeast Populations. |
| Q38897737 | Genotypic Context and Epistasis in Individuals and Populations |
| Q36620922 | Gyrase Mutations Are Associated with Variable Levels of Fluoroquinolone Resistance in Mycobacterium tuberculosis |
| Q34527469 | HIV-1 therapy with monoclonal antibody 3BNC117 elicits host immune responses against HIV-1. |
| Q50048664 | Hidden Complexity of Yeast Adaptation under Simple Evolutionary Conditions |
| Q55285004 | High mutation rates limit evolutionary adaptation in Escherichia coli. |
| Q36160359 | High-Throughput Identification of Adaptive Mutations in Experimentally Evolved Yeast Populations. |
| Q36372082 | High-order epistasis shapes evolutionary trajectories |
| Q96609310 | Highly parallel lab evolution reveals that epistasis can curb the evolution of antibiotic resistance |
| Q36368892 | Identification of the potentiating mutations and synergistic epistasis that enabled the evolution of inter-species cooperation |
| Q90640490 | Identifying the drivers of computationally detected correlated evolution among sites under antibiotic selection |
| Q99207734 | Idiosyncratic epistasis creates universals in mutational effects and evolutionary trajectories |
| Q92471939 | Increasing growth rate slows adaptation when genotypes compete for diffusing resources |
| Q35636993 | Inexpensive multiplexed library preparation for megabase-sized genomes |
| Q64903628 | Inferring the shape of global epistasis. |
| Q49649776 | Mapping Causal Variants with Single-Nucleotide Resolution Reveals Biochemical Drivers of Phenotypic Change. |
| Q52591749 | Mapping the Evolutionary Potential of RNA Viruses. |
| Q36280245 | Metabolite toxicity determines the pace of molecular evolution within microbial populations |
| Q92141659 | Microbial Experimental Evolution - a proving ground for evolutionary theory and a tool for discovery |
| Q91891435 | Minimum epistasis interpolation for sequence-function relationships |
| Q49541273 | Modeling the Subclonal Evolution of Cancer Cell Populations |
| Q64232908 | Modular epistasis and the compensatory evolution of gene deletion mutants |
| Q36349644 | Multidrug-resistant bacteria compensate for the epistasis between resistances. |
| Q43245159 | Multiple Resistance at No Cost: Rifampicin and Streptomycin a Dangerous Liaison in the Spread of Antibiotic Resistance. |
| Q47613442 | Mutation-Driven Parallel Evolution during Viral Adaptation |
| Q38692645 | Network approaches to systems biology analysis of complex disease: integrative methods for multi-omics data. |
| Q37493368 | On the (un)predictability of a large intragenic fitness landscape |
| Q37493334 | Paired quantitative and qualitative assessment of the replication-competent HIV-1 reservoir and comparison with integrated proviral DNA. |
| Q90595302 | Parallel genomic architecture underlies repeated sexual signal divergence in Hawaiian Laupala crickets |
| Q92568694 | Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations |
| Q64089456 | Pervasive function and evidence for selection across standing genetic variation in S. cerevisiae |
| Q64072305 | Polygenic adaptation: From sweeps to subtle frequency shifts |
| Q36380064 | Polymorphisms in the yeast galactose sensor underlie a natural continuum of nutrient-decision phenotypes. |
| Q35835073 | Polyploidy can drive rapid adaptation in yeast |
| Q58760610 | Power law fitness landscapes and their ability to predict fitness |
| Q36096596 | Practical low-coverage genomewide sequencing of hundreds of individually barcoded samples for population and evolutionary genomics in nonmodel species |
| Q89061074 | Precise, automated control of conditions for high-throughput growth of yeast and bacteria with eVOLVER |
| Q54295384 | Predicting evolution. |
| Q51249955 | Predicting the basis of convergent evolution. |
| Q42630520 | Prediction of Cross-resistance and Collateral Sensitivity by Gene Expression profiles and Genomic Mutations |
| Q96822207 | Prior evolution in stochastic versus constant temperatures affects RNA virus evolvability at a thermal extreme |
| Q55208702 | Quantifying natural seasonal variation in mutation parameters with mutation accumulation lines. |
| Q36735070 | Random transposon mutagenesis of the Saccharopolyspora erythraea genome reveals additional genes influencing erythromycin biosynthesis |
| Q98613814 | Rapid and robust evolution of collateral sensitivity in Pseudomonas aeruginosa antibiotic-resistant mutants |
| Q90244482 | Recent insights into the genotype-phenotype relationship from massively parallel genetic assays |
| Q48521753 | Recombination Alters the Dynamics of Adaptation on Standing Variation in Laboratory Yeast Populations. |
| Q46298833 | Recurrent Reverse Evolution Maintains Polymorphism after Strong Bottlenecks in Commensal Gut Bacteria. |
| Q89467843 | Restriction of HIV-1 Escape by a Highly Broad and Potent Neutralizing Antibody |
| Q64095077 | Revealing evolutionary constraints on proteins through sequence analysis |
| Q92982207 | Scalable, Continuous Evolution of Genes at Mutation Rates above Genomic Error Thresholds |
| Q45071448 | Seasonally fluctuating selection can maintain polymorphism at many loci via segregation lift. |
| Q36269559 | Seeking Goldilocks During Evolution of Drug Resistance |
| Q47378055 | Selecting among three basic fitness landscape models: Additive, multiplicative and stickbreaking |
| Q89637630 | Sex alters molecular evolution in diploid experimental populations of S. cerevisiae |
| Q40947611 | Sex speeds adaptation by altering the dynamics of molecular evolution. |
| Q93013409 | Simulations reveal challenges to artificial community selection and possible strategies for success |
| Q90703960 | Single nucleotide mapping of trait space reveals Pareto fronts that constrain adaptation |
| Q58084796 | Slower environmental change hinders adaptation from standing genetic variation |
| Q47851713 | Strain Diversity and the Evolution of Antibiotic Resistance |
| Q28551065 | Strong Selection Significantly Increases Epistatic Interactions in the Long-Term Evolution of a Protein |
| Q28651496 | Sulfur isotope fractionation during the evolutionary adaptation of a sulfate-reducing bacterium |
| Q53247059 | Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli. |
| Q28646039 | The Valley-of-Death: reciprocal sign epistasis constrains adaptive trajectories in a constant, nutrient limiting environment |
| Q58570246 | The causes of evolvability and their evolution |
| Q39030319 | The effect of selection environment on the probability of parallel evolution. |
| Q35579831 | The evolutionarily stable distribution of fitness effects |
| Q28649903 | The functional basis of adaptive evolution in chemostats |
| Q88785739 | The genomic landscape of evolutionary convergence in mammals, birds and reptiles |
| Q34864177 | The impact of macroscopic epistasis on long-term evolutionary dynamics |
| Q39024576 | The rule of declining adaptability in microbial evolution experiments. |
| Q26864257 | The spectrum of adaptive mutations in experimental evolution |
| Q59353073 | The utility of fitness landscapes and big data for predicting evolution |
| Q41463308 | There and back again: consequences of biofilm specialization under selection for dispersal. |
| Q35050923 | Too much of a good thing: the unique and repeated paths toward copper adaptation |
| Q27003480 | Towards the identification of the loci of adaptive evolution |
| Q62085463 | Uncovering and resolving challenges of quantitative modeling in a simplified community of interacting cells |
| Q90399281 | Variability in fitness effects can preclude selection of the fittest |
| Q26830367 | What can we learn from fitness landscapes? |
| Q28818537 | Widespread Genetic Incompatibilities between First-Step Mutations during Parallel Adaptation of Saccharomyces cerevisiae to a Common Environment |
| Q36185016 | iSeq: A New Double-Barcode Method for Detecting Dynamic Genetic Interactions in Yeast |
| Q36320316 | swga: A primer design toolkit for selective whole genome amplification. |
Search more.