The dynamics of adaptation on correlated fitness landscapes

scientific article published on 26 October 2009

The dynamics of adaptation on correlated fitness landscapes is …
instance of (P31):
scholarly articleQ13442814

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P819ADS bibcode2009PNAS..10618638K
P356DOI10.1073/PNAS.0905497106
P932PMC publication ID2767361
P698PubMed publication ID19858497
P5875ResearchGate publication ID38037819

P50authorJoshua B. PlotkinQ57242660
P2093author name stringSergey Kryazhimskiy
Gasper Tkacik
P2860cites workGenome evolution and adaptation in a long-term experiment with Escherichia coliQ22122199
The Distribution of Fitness Effects Among Beneficial MutationsQ24543521
Adaptive molecular evolution for 13,000 phage generations: a possible arms raceQ24545052
The rate of adaptation in asexualsQ24548116
Frequency of fixation of adaptive mutations is higher in evolving diploid than haploid yeast populationsQ59092867
Properties of adaptive walks on uncorrelated landscapes under strong selection and weak mutation.Q64939522
On evolution in a population with an infinite number of typesQ70739411
A simple stochastic gene substitution modelQ71016135
Continuity in evolution: on the nature of transitionsQ74594348
The population genetics of adaptation: the adaptation of DNA sequencesQ74699508
Evolution in a rugged fitness landscapeQ77863377
The population genetics of adaptation on correlated fitness landscapes: the block modelQ80068725
Adaptive evolution of asexual populations under Muller's ratchetQ80514758
The nk model and population geneticsQ81561603
Neutral evolution of mutational robustnessQ24655790
Beneficial mutation selection balance and the effect of linkage on positive selectionQ24685465
Long-term experimental evolution in Escherichia coli. XI. Rejection of non-transitive interactions as cause of declining rate of adaptationQ24794572
Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populationsQ28245607
Effects of selective neutrality on the evolution of molecular speciesQ28766080
Experimental rugged fitness landscape in protein sequence spaceQ33267358
Extracting characteristic properties of fitness landscape from in vitro molecular evolution: a case study on infectivity of fd phage to E.coliQ33275054
Understanding the evolutionary fate of finite populations: the dynamics of mutational effectsQ33281050
On the accessibility of adaptive phenotypes of a bacterial metabolic networkQ33495538
Protein evolution on partially correlated landscapesQ33860729
The population genetics of ecological specialization in evolving Escherichia coli populationsQ33922714
A study on a nearly neutral mutation model in finite populationsQ33957845
Exceptional convergent evolution in a virus.Q33971443
The dynamical theory of coevolution: a derivation from stochastic ecological processesQ34062882
Protein evolution on rugged landscapesQ34296709
The solitary wave of asexual evolutionQ34470274
Digital genetics: unravelling the genetic basis of evolutionQ34485612
The speed of adaptation in large asexual populationsQ34645731
Clonal interference in large populationsQ36156834
Defining genetic interactionQ36491179
Epistasis between deleterious mutations and the evolution of recombinationQ36751300
Evolutionary genetics: a piggyback ride to adaptation and diversityQ36807008
A general extreme value theory model for the adaptation of DNA sequences under strong selection and weak mutationQ36969656
The contribution of epistasis to the architecture of fitness in an RNA virusQ37593251
The effect of deleterious alleles on adaptation in asexual populations.Q42534673
The NK model of rugged fitness landscapes and its application to maturation of the immune responseQ42643980
EVOLUTIONARY DYNAMICS OF FITNESS RECOVERY FROM THE DEBILITATING EFFECTS OF MULLER'S RATCHET.Q46218646
Towards a general theory of adaptive walks on rugged landscapesQ47593883
Protein Polymorphism as a Phase of Molecular EvolutionQ47760423
An equivalence principle for the incorporation of favorable mutations in asexual populations.Q50736355
A minimum on the mean number of steps taken in adaptive walks.Q52026868
The fate of competing beneficial mutations in an asexual population.Q54262235
Fitness effects of fixed beneficial mutations in microbial populations.Q54541810
How Mutational Networks Shape Evolution: Lessons from RNA ModelsQ57015492
Evolutionary Dynamics of Fitness Recovery from the Debilitating Effects of Muller's RatchetQ57052392
P433issue44
P407language of work or nameEnglishQ1860
P304page(s)18638-18643
P577publication date2009-10-26
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleThe dynamics of adaptation on correlated fitness landscapes
P478volume106

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cites work (P2860)
Q51826213A shift from magnitude to sign epistasis during adaptive evolution of a bacterial social trait.
Q41986173Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model
Q35175854Adaptation of a cyanobacterium to a biochemically rich environment in experimental evolution as an initial step toward a chloroplast-like state
Q64933411Adaptive dynamics of unstable cancer populations: The canonical equation.
Q48248281Author’s response: Humans, fruit flies, and automatons.
Q35672470Backbones of evolutionary history test biodiversity theory for microbes
Q47106674Beneficial mutation-selection dynamics in finite asexual populations: a free boundary approach.
Q37173084Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness
Q34537612Changes in selective effects over time facilitate turnover of enhancer sequences
Q92126113Computational Complexity as an Ultimate Constraint on Evolution
Q42633184Detecting epistasis from an ensemble of adapting populations.
Q39954065Diminishing returns epistasis among beneficial mutations decelerates adaptation
Q54219938Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory.
Q51332673Epistasis from functional dependence of fitness on underlying traits.
Q34760482Epistasis increases the rate of conditionally neutral substitution in an adapting population
Q41309636Evolution of new regulatory functions on biophysically realistic fitness landscapes.
Q90414037Evolving generalists in switching rugged landscapes
Q33523627Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations
Q35962233Exploiting the Adaptation Dynamics to Predict the Distribution of Beneficial Fitness Effects
Q43184230Genetic background affects epistatic interactions between two beneficial mutations
Q37184676How Good Are Statistical Models at Approximating Complex Fitness Landscapes?
Q36368892Identification of the potentiating mutations and synergistic epistasis that enabled the evolution of inter-species cooperation
Q59867557Impact of epistasis and pleiotropy on evolutionary adaptation
Q33730568Inferring fitness landscapes by regression produces biased estimates of epistasis.
Q52735819Insertions and deletions trigger adaptive walks in Drosophila proteins.
Q42706151Introduction to focus issue: genetic interactions
Q45261637Long-term dynamics of adaptation in asexual populations
Q35105723Mapping the fitness landscape of gene expression uncovers the cause of antagonism and sign epistasis between adaptive mutations.
Q38053191Mechanisms and selection of evolvability: experimental evidence.
Q92141659Microbial Experimental Evolution - a proving ground for evolutionary theory and a tool for discovery
Q39169158Microbial evolution. Global epistasis makes adaptation predictable despite sequence-level stochasticity
Q47112377Molecular ensembles make evolution unpredictable.
Q44010374Negative epistasis between beneficial mutations in an evolving bacterial population
Q45362198On the findability of genotypes
Q45994253Parallel emergence of negative epistasis across experimental lineages.
Q92568694Patterns and Mechanisms of Diminishing Returns from Beneficial Mutations
Q21145317Predictability of evolutionary trajectories in fitness landscapes
Q28477179Prevalence of epistasis in the evolution of influenza A surface proteins
Q35077513Quantifying the similarity of monotonic trajectories in rough and smooth fitness landscapes
Q58570337Remote optimization of an ultracold atoms experiment by experts and citizen scientists
Q34504896Replaying the tape of life: quantification of the predictability of evolution
Q47378055Selecting among three basic fitness landscape models: Additive, multiplicative and stickbreaking
Q42324334Selection Limits to Adaptive Walks on Correlated Landscapes
Q35748281Stickbreaking: a novel fitness landscape model that harbors epistasis and is consistent with commonly observed patterns of adaptive evolution
Q92488321Stochastic tunneling across fitness valleys can give rise to a logarithmic long-term fitness trajectory
Q47136281The Nonstationary Dynamics of Fitness Distributions: Asexual Model with Epistasis and Standing Variation
Q26860873The causes of epistasis
Q58570246The causes of evolvability and their evolution
Q42145476The dynamics of adapting, unregulated populations and a modified fundamental theorem
Q46297608The dynamics of molecular evolution over 60,000 generations.
Q34671988The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
Q35912265The genetic consequences of selection in natural populations.
Q34864177The impact of macroscopic epistasis on long-term evolutionary dynamics
Q42427784The peaks and geometry of fitness landscapes
Q40587253The strength of genetic interactions scales weakly with mutational effects
Q36153034Theory of prokaryotic genome evolution
Q34239196Young proteins experience more variable selection pressures than old proteins

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