Genome dynamics during experimental evolution

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Genome dynamics during experimental evolution is …
instance of (P31):
scholarly articleQ13442814

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P6179Dimensions Publication ID1010661749
P356DOI10.1038/NRG3564
P3181OpenCitations bibliographic resource ID1833994
P932PMC publication ID4239992
P698PubMed publication ID24166031

P50authorRichard LenskiQ713637
Jeffrey E BarrickQ42531828
P2860cites workGenome features of "Dark-fly", a Drosophila line reared long-term in a dark environmentQ21560957
Experimental evolution of multicellularity.Q22066269
Experimental selection of hypoxia-tolerant Drosophila melanogasterQ22066287
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coliQ22066316
Fitness and its role in evolutionary geneticsQ22122004
The distribution of fitness effects of new mutationsQ22122013
The evolution of low mutation rates in experimental mutator populations of Saccharomyces cerevisiaeQ84444250
Acceleration of emergence of bacterial antibiotic resistance in connected microenvironmentsQ84975610
Genome-wide analysis of a long-term evolution experiment with DrosophilaQ22122175
Genome evolution and adaptation in a long-term experiment with Escherichia coliQ22122199
Rates of spontaneous mutationQ24548000
Carcinogens are mutagens: a simple test system combining liver homogenates for activation and bacteria for detectionQ24564216
The rate and molecular spectrum of spontaneous mutations in Arabidopsis thalianaQ24622979
Genomic analysis of a key innovation in an experimental Escherichia coli populationQ24632912
Adaptive evolution of an sRNA that controls Myxococcus developmentQ24633577
Second-order selection for evolvability in a large Escherichia coli populationQ24635911
Evolutionary consequences of niche construction and their implications for ecologyQ24679745
The causes of epistasisQ26860873
Precise manipulation of chromosomes in vivo enables genome-wide codon replacementQ28243372
Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populationsQ28245607
Creation of a bacterial cell controlled by a chemically synthesized genomeQ28283016
Next-generation DNA sequencing methodsQ28285066
The fitness effects of random mutations in single-stranded DNA and RNA bacteriophagesQ28471969
Parallel evolutionary dynamics of adaptive diversification in Escherichia coliQ28708794
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic loadQ28710085
Cancer in light of experimental evolutionQ28727500
Evolution combined with genomic study elucidates genetic bases of isobutanol tolerance in Escherichia coliQ28741397
Genome-wide mutational diversity in an evolving population of Escherichia coliQ28751288
Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestorQ28768673
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.Q30426714
Clonal adaptive radiation in a constant environmentQ33249164
Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coliQ33294903
Experimental evolution and genome sequencing reveal variation in levels of clonal interference in large populations of bacteriophage phiX174.Q33325656
Death and cannibalism in a seasonal environment facilitate bacterial coexistenceQ33385515
Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infectionsQ33455287
Experimental evolution of a plant pathogen into a legume symbiontQ33525006
Evolution at a high imposed mutation rate: adaptation obscures the load in phage T7Q33628435
Periodic selection in Escherichia coliQ33711273
The repeatability of adaptive radiation during long-term experimental evolution of Escherichia coli in a multiple nutrient environmentQ33769826
Standing genetic variation in contingency loci drives the rapid adaptation of Campylobacter jejuni to a novel hostQ33808990
Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscapeQ33892372
Genomic sequencing reveals regulatory mutations and recombinational events in the widely used MC4100 lineage of Escherichia coli K-12Q37232509
Directed evolution of ionizing radiation resistance in Escherichia coliQ37301986
A genome-wide view of Caenorhabditis elegans base-substitution mutation processes.Q37364105
Measurements of spontaneous rates of mutations in the recent past and the near futureQ37716240
The balance between mutators and nonmutators in asexual populationsQ38517985
Diminishing returns epistasis among beneficial mutations decelerates adaptationQ39954065
Experimental evolution of a facultative thermophile from a mesophilic ancestorQ40310562
Antagonistic coevolution accelerates molecular evolutionQ41813977
The population genetics of mutations: good, bad and indifferentQ42778842
Analysis of the genome sequences of three Drosophila melanogaster spontaneous mutation accumulation linesQ42921561
Understanding the differences between genome sequences of Escherichia coli B strains REL606 and BL21(DE3) and comparison of the E. coli B and K-12 genomesQ43274452
Negative epistasis between beneficial mutations in an evolving bacterial populationQ44010374
The molecular diversity of adaptive convergence.Q46185374
Neutralism and selectionism: a network-based reconciliationQ46669644
Evolutionary implications of the frequent horizontal transfer of mismatch repair genesQ50117948
The evolution of mutation rates: separating causes from consequencesQ55878709
Adaptive radiation in a heterogeneous environmentQ56038387
Some Genetic Aspects of SexQ56235384
Experimental evolution yields hundreds of mutations in a functional viral genomeQ56900292
Parallel Genetic and Phenotypic Evolution of DNA Superhelicity in Experimental Populations of Escherichia coliQ56920018
Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coliQ58870925
Relative fitness can decrease in evolving asexual populations of S. cerevisiaeQ59051577
The evolution of mutation rates: separating causes from consequencesQ33925698
Exceptional convergent evolution in a virus.Q33971443
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.Q34011353
A window into third-generation sequencingQ34139314
Repeatability and contingency in the evolution of a key innovation in phage lambdaQ34250057
Repeated, selection-driven genome reduction of accessory genes in experimental populationsQ34270480
Experimental evolutionQ34289524
Microbial Competition: Escherichia coli Mutants That Take Over Stationary Phase CulturesQ34305902
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populationsQ34358875
Genetic changes during a laboratory adaptive evolution process that allowed fast growth in glucose to an Escherichia coli strain lacking the major glucose transport systemQ34376116
Evolution of high mutation rates in experimental populations of E. coliQ34429727
Long-term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphismQ34431559
Different trajectories of parallel evolution during viral adaptationQ34504264
Emergent properties of reduced-genome Escherichia coli.Q34518764
Evolution after introduction of a novel metabolic pathway consistently leads to restoration of wild-type physiologyQ34671996
Tests of parallel molecular evolution in a long-term experiment with Escherichia coliQ34694847
Coevolution with viruses drives the evolution of bacterial mutation rates.Q34722064
Evolutionary dynamics of bacteria in a human host environmentQ34937408
Microbial laboratory evolution in the era of genome-scale scienceQ35176401
Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulationQ35271498
Proliferation of mutators in A cell populationQ35618973
Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitatQ35760235
Stock culture heterogeneity rather than new mutational variation complicates short-term cell physiology studies of Escherichia coli K-12 MG1655 in continuous culture.Q35959844
Ecological and evolutionary dynamics of coexisting lineages during a long-term experiment with Escherichia coliQ36066277
The multiplicity of divergence mechanisms in a single evolving populationQ36245287
Comparative genomic hybridization detects secondary chromosomal deletions in Escherichia coli K-12 MG1655 mutants and highlights instability in the flhDC regionQ36314696
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing.Q36339832
Long-term survival during stationary phase: evolution and the GASP phenotypeQ36369839
Drift-barrier hypothesis and mutation-rate evolution.Q36389558
A genome-wide view of the spectrum of spontaneous mutations in yeast.Q36756806
Evolution of global regulatory networks during a long-term experiment with Escherichia coliQ36906771
Whole-genome mutational biases in bacteriaQ36976728
Clonal interference, multiple mutations and adaptation in large asexual populationsQ37011413
Spontaneous mutationQ37041840
P433issue12
P407language of work or nameEnglishQ1860
P921main subjectexperimental evolutionQ3592884
P304page(s)827-39
P577publication date2013-12-01
P1433published inNature Reviews GeneticsQ1071824
P1476titleGenome dynamics during experimental evolution
P478volume14

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