scholarly article | Q13442814 |
P50 | author | Claudia Bank | Q57548171 |
Paulo Durao | Q79339195 | ||
Isabel Gordo | Q41582649 | ||
Ricardo S. Ramiro | Q42394563 | ||
P2860 | cites work | The distribution of fitness effects of new mutations | Q22122013 |
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection | Q22122301 | ||
The Protein Data Bank | Q24515306 | ||
The evolutionary advantage of recombination | Q24533419 | ||
Genetic drift in an infinite population. The pseudohitchhiking model | Q24548113 | ||
Human gut microbiome viewed across age and geography | Q24602950 | ||
Evolution of clonal populations approaching a fitness peak. | Q43101601 | ||
The polymerase subunit of DNA polymerase III of Escherichia coli. I. Amplification of the dnaE gene product and polymerase activity of the alpha subunit. | Q43501017 | ||
Recurrent Reverse Evolution Maintains Polymorphism after Strong Bottlenecks in Commensal Gut Bacteria. | Q46298833 | ||
A communal catalogue reveals Earth's multiscale microbial diversity | Q46349678 | ||
Novel phosphotransferase-encoding genes revealed by analysis of the Escherichia coli genome: a chimeric gene encoding an Enzyme I homologue that possesses a putative sensory transduction domain. | Q46600237 | ||
Preparation of genomic DNA from bacteria | Q46761047 | ||
Using long-term experimental evolution to uncover the patterns and determinants of molecular evolution of an Escherichia coli natural isolate in the streptomycin-treated mouse gut. | Q47165136 | ||
High mutation frequencies among Escherichia coli and Salmonella pathogens | Q48057867 | ||
Estimate of the genomic mutation rate deleterious to overall fitness in E. coli. | Q51030744 | ||
Multiscale Evolutionary Dynamics of Host-Associated Microbiomes. | Q51148518 | ||
Mutator dynamics in fluctuating environments. | Q52043835 | ||
Mutation dynamics and fitness effects followed in single cells. | Q52930024 | ||
Escherichia coli diversity in the lower intestinal tract of humans. | Q54160975 | ||
Role of mutator alleles in adaptive evolution. | Q54564129 | ||
High mutation rates limit evolutionary adaptation in Escherichia coli. | Q55285004 | ||
Costs and Benefits of High Mutation Rates: Adaptive Evolution of Bacteria in the Mouse Gut | Q56944626 | ||
Highly Variable Mutation Rates in Commensal and Pathogenic Escherichia coli | Q56944671 | ||
Two methods for mapping and visualizing associated data on phylogeny using ggtree | Q57798689 | ||
Mutant phenotypes for thousands of bacterial genes of unknown function | Q58061559 | ||
Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing | Q58730084 | ||
Evolutionary dynamics of bacteria in the gut microbiome within and across hosts | Q61811295 | ||
Tumor mutational load predicts survival after immunotherapy across multiple cancer types | Q62745707 | ||
Adaptive evolution of asexual populations under Muller's ratchet | Q80514758 | ||
COMPETITION BETWEEN HIGH AND LOW MUTATING STRAINS OF ESCHERICHIA COLI | Q88206326 | ||
The ecological importance of intraspecific variation | Q89479984 | ||
ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R | Q90281822 | ||
Host-Specific Adaptive Diversification of Crohn's Disease-Associated Adherent-Invasive Escherichia coli | Q91228108 | ||
Adaptive Evolution within Gut Microbiomes of Healthy People | Q91555201 | ||
The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes | Q91563905 | ||
Horizontal gene transfer overrides mutation in Escherichia coli colonizing the mammalian gut | Q92734400 | ||
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing | Q24629733 | ||
Environmental stresses can alleviate the average deleterious effect of mutations | Q24797360 | ||
The role of bacterial antizyme: From an inhibitory protein to AtoC transcriptional regulator | Q24798200 | ||
Basic local alignment search tool | Q25938991 | ||
Spatiotemporal microbial evolution on antibiotic landscapes | Q26844386 | ||
The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
The first steps of adaptation of Escherichia coli to the gut are dominated by soft sweeps | Q28235419 | ||
A constant rate of spontaneous mutation in DNA-based microbes | Q28271032 | ||
Comparisons of dN/dS are time dependent for closely related bacterial genomes | Q28278192 | ||
A genome-wide screen for bacterial envelope biogenesis mutants identifies a novel factor involved in cell wall precursor metabolism | Q28538240 | ||
Genome dynamics during experimental evolution | Q28651650 | ||
Mutation rate dynamics in a bacterial population reflect tension between adaptation and genetic load | Q28710085 | ||
Diet rapidly and reproducibly alters the human gut microbiome | Q29547454 | ||
Molecular signatures of natural selection | Q29614731 | ||
THE RELATION OF RECOMBINATION TO MUTATIONAL ADVANCE | Q29616118 | ||
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation | Q29617796 | ||
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences | Q30002335 | ||
Identification of a pathway for the utilization of the Amadori product fructoselysine in Escherichia coli | Q30708333 | ||
Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq | Q30823409 | ||
Fast and accurate phylogeny reconstruction algorithms based on the minimum-evolution principle | Q30875297 | ||
Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis | Q33430666 | ||
Escherichia coli mutator genes | Q33539352 | ||
Estimation of growth rates of Escherichia coli BJ4 in streptomycin-treated and previously germfree mice by in situ rRNA hybridization | Q33637444 | ||
Determining mutation rates in bacterial populations | Q33803752 | ||
Fitness is strongly influenced by rare mutations of large effect in a microbial mutation accumulation experiment | Q33895088 | ||
Trade-off between bile resistance and nutritional competence drives Escherichia coli diversification in the mouse gut. | Q33940759 | ||
A ruby in the rubbish: beneficial mutations, deleterious mutations and the evolution of sex | Q33963090 | ||
Antibiotic resistance in the ECOR collection: integrons and identification of a novel aad gene | Q33979706 | ||
The link between phylogeny and virulence in Escherichia coli extraintestinal infection | Q34000162 | ||
Transduction of linked genetic characters of the host by bacteriophage P1. | Q34237612 | ||
DNA polymerase III accessory proteins. V. Theta encoded by holE. | Q34366037 | ||
Evolution of high mutation rates in experimental populations of E. coli | Q34429727 | ||
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. | Q34508854 | ||
Tempo and mode of genome evolution in a 50,000-generation experiment | Q34535938 | ||
Estimating selection on nonsynonymous mutations | Q34587600 | ||
Catabolism of Amino Acids and Related Compounds. | Q38600990 | ||
Day-to-Day Dynamics of Commensal Escherichia coli in Zimbabwean Cows Evidence Temporal Fluctuations within a Host-Specific Population Structure. | Q38836150 | ||
The effect of spatial structure on adaptation in Escherichia coli | Q38844301 | ||
Escherichia coli pathotypes occupy distinct niches in the mouse intestine | Q38852242 | ||
Genetic drift, selection and the evolution of the mutation rate | Q38980350 | ||
Evolution of commensal bacteria in the intestinal tract of mice. | Q39357983 | ||
The evolution of the host microbiome as an ecosystem on a leash | Q40108627 | ||
Variable spontaneous mutation rate in clinical strains of multidrug-resistant Acinetobacter baumannii and differentially expressed proteins in a hypermutator strain. | Q40147135 | ||
The utilisation of D-galactonate and D-2-oxo-3-deoxygalactonate by Escherichia coli K-12. Biochemical and genetical studies | Q40176221 | ||
Adaptive tuning of mutation rates allows fast response to lethal stress in Escherichia coli | Q40230898 | ||
Intrapopulation variability in mutator prevalence among urinary tract infection isolates of Escherichia coli. | Q40738041 | ||
MUTATION LOAD AND THE SURVIVAL OF SMALL POPULATIONS. | Q41176863 | ||
On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants | Q41645462 | ||
The streptomycin-treated mouse intestine selects Escherichia coli envZ missense mutants that interact with dense and diverse intestinal microbiota | Q41769005 | ||
Self-correcting mismatches during high-fidelity DNA replication | Q41916519 | ||
Enrichment and elimination of mutY mutators in Escherichia coli populations | Q42031695 | ||
Precolonized human commensal Escherichia coli strains serve as a barrier to E. coli O157:H7 growth in the streptomycin-treated mouse intestine | Q42033739 | ||
The degeneration of asexual haploid populations and the speed of Muller's ratchet | Q42122982 | ||
Competition between high- and higher-mutating strains of Escherichia coli | Q42736352 | ||
Fluctuation tests: how reliable are the estimates of mutation rates? | Q42825321 | ||
Identity and function of a large gene network underlying mutagenic repair of DNA breaks | Q42969505 | ||
Mutators, population size, adaptive landscape and the adaptation of asexual populations of bacteria | Q34607018 | ||
Adaptive mutations in bacteria: high rate and small effects | Q34661718 | ||
Where next for microbiome research? | Q34988909 | ||
Normal mutation rate variants arise in a Mutator (Mut S) Escherichia coli population. | Q34998550 | ||
Transkingdom control of microbiota diurnal oscillations promotes metabolic homeostasis. | Q35444103 | ||
Manipulation of the quorum sensing signal AI-2 affects the antibiotic-treated gut microbiota | Q35584736 | ||
Gut biogeography of the bacterial microbiota | Q35820919 | ||
Adaptive immunity increases the pace and predictability of evolutionary change in commensal gut bacteria | Q35855014 | ||
Contrasting mutation rates from specific-locus and long-term mutation-accumulation procedures | Q35914975 | ||
A highly precise and portable genome engineering method allows comparison of mutational effects across bacterial species | Q35925574 | ||
Functional analysis of the tdcABC promoter of Escherichia coli: roles of TdcA and TdcR | Q35979367 | ||
DNA replication fidelity in Escherichia coli: a multi-DNA polymerase affair. | Q36080876 | ||
An Escherichia coli dnaE mutation with suppressor activity toward mutator mutD5 | Q36110291 | ||
Maintaining a healthy SPANC balance through regulatory and mutational adaptation | Q36158907 | ||
A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut | Q36182021 | ||
Dephosphorylated NPr is involved in an envelope stress response of Escherichia coli | Q36255002 | ||
Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. | Q36339832 | ||
A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input-mutation output relationships. | Q36395746 | ||
On the mutational topology of the bacterial genome | Q36642223 | ||
Whole-genome mutational biases in bacteria | Q36976728 | ||
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability | Q37275280 | ||
The theta subunit of Escherichia coli DNA polymerase III: a role in stabilizing the epsilon proofreading subunit. | Q37425766 | ||
The EcoCyc database: reflecting new knowledge about Escherichia coli K-12. | Q37556663 | ||
Mutator strains of Escherichia coli, mutD and dnaQ, with defective exonucleolytic editing by DNA polymerase III holoenzyme | Q37608812 | ||
Mutants in the Exo I motif of Escherichia coli dnaQ: defective proofreading and inviability due to error catastrophe | Q37678547 | ||
The population genetics of commensal Escherichia coli | Q37692844 | ||
Regulatory roles of the bacterial nitrogen-related phosphotransferase system | Q37702617 | ||
Rate and effects of spontaneous mutations that affect fitness in mutator Escherichia coli | Q37716243 | ||
Host-derived nitrate boosts growth of E. coli in the inflamed gut | Q37731297 | ||
Microbial strain-level population structure and genetic diversity from metagenomes | Q37735523 | ||
Mechanisms of acid resistance in Escherichia coli | Q38108828 | ||
Fluoroquinolone resistance: mechanisms, impact on bacteria, and role in evolutionary success | Q38212925 | ||
Resistance to rifampicin: a review | Q38239459 | ||
P275 | copyright license | Creative Commons Attribution 4.0 International | Q20007257 |
P6216 | copyright status | copyrighted | Q50423863 |
P433 | issue | 3 | |
P304 | page(s) | e3000617 | |
P577 | publication date | 2020-03-10 | |
P1433 | published in | PLOS Biology | Q1771695 |
P1476 | title | Low mutational load and high mutation rate variation in gut commensal bacteria | |
P478 | volume | 18 |
Search more.