| scholarly article | Q13442814 |
| P50 | author | Jue D Wang | Q38318143 |
| P2093 | author name string | Lyle A Simmons | |
| Jeremy W Schroeder | |||
| Ponlkrit Yeesin | |||
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| Structural evidence for the rare tautomer hypothesis of spontaneous mutagenesis | Q27675110 | ||
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| Structural Factors That Determine Selectivity of a High Fidelity DNA Polymerase for Deoxy-, Dideoxy-, and Ribonucleotides | Q27679368 | ||
| Crystal structure of a DNA duplex containing 8-hydroxydeoxyguanine-adenine base pairs | Q27730872 | ||
| The DNA Damage Response: Making It Safe to Play with Knives | Q27861055 | ||
| Lagging-strand replication shapes the mutational landscape of the genome | Q28255984 | ||
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| DNA polymerase II as a fidelity factor in chromosomal DNA synthesis in Escherichia coli | Q28272381 | ||
| The origin of mutants | Q28288915 | ||
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| Asymmetric substitution patterns in the two DNA strands of bacteria | Q29618276 | ||
| The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine) | Q29619959 | ||
| The distribution of the numbers of mutants in bacterial populations | Q29620123 | ||
| Genetic control of hydroxamate-mediated iron uptake in Escherichia coli | Q30451427 | ||
| The mutagenesis protein UmuC is a DNA polymerase activated by UmuD', RecA, and SSB and is specialized for translesion replication | Q31422789 | ||
| Two essential DNA polymerases at the bacterial replication fork. | Q33183142 | ||
| Characterization of nucleotide pools as a function of physiological state in Escherichia coli | Q33304153 | ||
| Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis | Q33430666 | ||
| Homologous recombination between the tuf genes of Salmonella typhimurium. | Q47826625 | ||
| Influence of neighboring bases on DNA polymerase insertion and proofreading fidelity. | Q52667477 | ||
| 8-Hydroxyguanine, a DNA adduct formed by oxygen radicals: its implication on oxygen radical-involved mutagenesis/carcinogenesis | Q53500821 | ||
| The replicative polymerases PolC and DnaE are required for theta replication of the Bacillus subtilis plasmid pBS72. | Q53780253 | ||
| Directionality of DNA replication fork movement strongly affects the generation of spontaneous mutations in Escherichia coli. | Q54013691 | ||
| A novel mutational hotspot in a natural quasipalindrome in Escherichia coli. | Q54037019 | ||
| Cis and trans-acting effects on a mutational hotspot involving a replication template switch. | Q54473224 | ||
| Distinctive genetic features exhibited by the Y-family DNA polymerases in Bacillus subtilis. | Q54498230 | ||
| Base selection, proofreading, and mismatch repair during DNA replication in Escherichia coli. | Q54648245 | ||
| Reconstitution of the B. subtilis replisome with 13 proteins including two distinct replicases. | Q54695212 | ||
| Mechanisms of spontaneous mutagenesis: an analysis of the spectrum of spontaneous mutation in the Escherichia coli lacI gene. | Q54780272 | ||
| DNA replication errors produced by the replicative apparatus of Escherichia coli. | Q64994677 | ||
| NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site | Q68189284 | ||
| Sequence-dependent DNA structure. The role of base stacking interactions | Q70672535 | ||
| Transcription-induced deletions in Escherichia coli plasmids | Q70893893 | ||
| Transcription-induced deletions in plasmid vectors: M13 DNA replication as a source of instability | Q71702004 | ||
| The dinB gene encodes a novel E. coli DNA polymerase, DNA pol IV, involved in mutagenesis | Q72994394 | ||
| Nuclear segregation and the delayed appearance of induced mutants in Escherichia coli | Q76199630 | ||
| Involvement of DnaE, the Second Replicative DNA Polymerase from Bacillus subtilis, in DNA Mutagenesis | Q79237484 | ||
| Evidence that errors made by DNA polymerase alpha are corrected by DNA polymerase delta | Q82346662 | ||
| Evaluating evolutionary models of stress-induced mutagenesis in bacteria | Q86095467 | ||
| The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway | Q37079602 | ||
| Rates and mechanisms of bacterial mutagenesis from maximum-depth sequencing | Q37083023 | ||
| Cost of rNTP/dNTP pool imbalance at the replication fork | Q37088805 | ||
| DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli | Q37188497 | ||
| Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli | Q37228914 | ||
| Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans | Q37229362 | ||
| Oxidatively generated damage to the guanine moiety of DNA: mechanistic aspects and formation in cells | Q37230353 | ||
| Removal of misincorporated ribonucleotides from prokaryotic genomes: an unexpected role for nucleotide excision repair | Q37288891 | ||
| Recombination and annealing pathways compete for substrates in making rrn duplications in Salmonella enterica | Q37412734 | ||
| Linking RNA polymerase backtracking to genome instability in E. coli | Q38257014 | ||
| Replication slippage of different DNA polymerases is inversely related to their strand displacement efficiency | Q38320553 | ||
| Co-directional replication-transcription conflicts lead to replication restart | Q38337096 | ||
| Use of the rpoB gene to determine the specificity of base substitution mutations on the Escherichia coli chromosome | Q38355288 | ||
| A dynamic polymerase exchange with Escherichia coli DNA polymerase IV replacing DNA polymerase III on the sliding clamp | Q39262357 | ||
| DNA replication fidelity in Mycobacterium tuberculosis is mediated by an ancestral prokaryotic proofreader. | Q39403499 | ||
| Spontaneous mutations that confer antibiotic resistance in Helicobacter pylori | Q39476503 | ||
| Quinolone resistance-determining region in the DNA gyrase gyrA gene of Escherichia coli | Q39816339 | ||
| Quantitation of cellular deoxynucleoside triphosphates | Q39843396 | ||
| Carbon starvation of Salmonella typhimurium does not cause a general increase of mutation rates | Q39847729 | ||
| Functional Interaction of the tonA/tonB Receptor System in Escherichia coli | Q39997076 | ||
| Screening of mutator phenotype in clinical strains of Acinetobacter baumannii. | Q40362470 | ||
| Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in Vibrio cholerae and Vibrio fischeri | Q40540697 | ||
| Mechanisms of transcription-replication collisions in bacteria | Q40890748 | ||
| Biochemical basis of DNA replication fidelity | Q40903454 | ||
| Uvm mutants of Escherichia coli K12 deficient in UV mutagenesis. I. Isolation of uvm mutants and their phenotypical characterization in DNA repair and mutagenesis | Q40958827 | ||
| Complementary base pairing and the origin of substitution mutations | Q41060332 | ||
| A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy | Q41203605 | ||
| On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants | Q41645462 | ||
| Roles of E. coli DNA polymerases IV and V in lesion-targeted and untargeted SOS mutagenesis | Q41734679 | ||
| Frequent Interchromosomal Template Switches during Gene Conversion in S. cerevisiae | Q41819480 | ||
| Polynucleotide phosphorylase plays an important role in the generation of spontaneous mutations in Escherichia coli | Q41910583 | ||
| Self-correcting mismatches during high-fidelity DNA replication | Q41916519 | ||
| Accelerated gene evolution through replication-transcription conflicts | Q41970825 | ||
| Genetic studies of the lac repressor. III. Additional correlation of mutational sites with specific amino acid residues | Q42028460 | ||
| The nature of mutations induced by replication–transcription collisions. | Q42097259 | ||
| Methods for determining spontaneous mutation rates | Q42620101 | ||
| T-T cyclobutane dimers are misinstructive, rather than non-instructive, mutagenic lesions | Q42634477 | ||
| Effect of translesion DNA polymerases, endonucleases and RpoS on mutation rates in Salmonella typhimurium | Q42719517 | ||
| Mismatch repair and the regulation of phase variation in Neisseria meningitidis | Q43612705 | ||
| DNA polymerase III of Enterococcus faecalis: expression and characterization of recombinant enzymes encoded by the polC and dnaE genes | Q44268086 | ||
| The effect of tautomeric constant on the specificity of nucleotide incorporation during DNA replication: support for the rare tautomer hypothesis of substitution mutagenesis. | Q44321315 | ||
| Detection of structural variants involving repetitive regions in the reference genome | Q44704791 | ||
| Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair | Q46617407 | ||
| Specific amino acid residues in the beta sliding clamp establish a DNA polymerase usage hierarchy in Escherichia coli | Q46843086 | ||
| A single amino acid governs enhanced activity of DinB DNA polymerases on damaged templates. | Q46890960 | ||
| Co-orientation of replication and transcription preserves genome integrity | Q33525506 | ||
| Polymerase exchange on single DNA molecules reveals processivity clamp control of translesion synthesis | Q33694470 | ||
| Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases | Q33740206 | ||
| Induced Mutations and Possible Mechanisms of the Transmission of Heredity in Escherichia Coli | Q33748645 | ||
| Spontaneous DNA breakage in single living Escherichia coli cells | Q33796363 | ||
| Determining mutation rates in bacterial populations | Q33803752 | ||
| The processive kinetics of gene conversion in bacteria. | Q33835884 | ||
| Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli | Q33874331 | ||
| DNA transcription and repressor binding affect deletion formation in Escherichia coli plasmids | Q33938282 | ||
| A set of lacZ mutations in Escherichia coli that allow rapid detection of specific frameshift mutations | Q33956589 | ||
| Spontaneous mutation in the Escherichia coli lacI gene | Q33958486 | ||
| Two thymidylate synthetases in Bacillus subtilis | Q33966286 | ||
| Delayed Phenotypic Expression of Spontaneous Mutations in Escherichia Coli | Q33975019 | ||
| Factors Responsible for the Delayed Appearance of Radiation-Induced Mutants in Escherichia Coli | Q33975175 | ||
| Forward and Reverse Mutation in a Histidine-Requiring Strain of Escherichia Coli | Q33975408 | ||
| Stem cell divisions, somatic mutations, cancer etiology, and cancer prevention | Q34048056 | ||
| Probing the active site tightness of DNA polymerase in subangstrom increments | Q34115892 | ||
| Active site tightness and substrate fit in DNA replication | Q34131462 | ||
| Genome instability due to ribonucleotide incorporation into DNA. | Q34142849 | ||
| Mutagenic processing of ribonucleotides in DNA by yeast topoisomerase I | Q34195091 | ||
| Frameshift mutations and the genetic code. This paper is dedicated to Professor Theodosius Dobzhansky on the occasion of his 66th birthday | Q34229913 | ||
| Hydrogen bonding, base stacking, and steric effects in dna replication | Q34243200 | ||
| Enzymatic removal of ribonucleotides from DNA is essential for mammalian genome integrity and development. | Q34274334 | ||
| A set of lacZ mutations in Escherichia coli that allow rapid detection of each of the six base substitutions | Q34290231 | ||
| Spectra of spontaneous mutations in Escherichia coli strains defective in mismatch correction: the nature of in vivo DNA replication errors. | Q34343418 | ||
| Translesion DNA polymerases | Q34356338 | ||
| Chromosome rearrangements via template switching between diverged repeated sequences | Q34430728 | ||
| Heterogeneous polymerase fidelity and mismatch repair bias genome variation and composition. | Q34439328 | ||
| Specificity and efficiency of editing of mismatches involved in the formation of base-substitution mutations by the 3'----5' exonuclease activity of phage T4 DNA polymerase | Q34595206 | ||
| Y-family DNA polymerases in Escherichia coli | Q34598779 | ||
| Oxidation of DNA: damage to nucleobases. | Q34614183 | ||
| Transcription regulatory elements are punctuation marks for DNA replication | Q34624448 | ||
| Roles of YqjH and YqjW, homologs of the Escherichia coli UmuC/DinB or Y superfamily of DNA polymerases, in stationary-phase mutagenesis and UV-induced mutagenesis of Bacillus subtilis | Q34810207 | ||
| Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection | Q35006626 | ||
| Mutation rate, spectrum, topology, and context-dependency in the DNA mismatch repair-deficient Pseudomonas fluorescens ATCC948. | Q35047565 | ||
| Insights into mutagenesis using Escherichia coli chromosomal lacZ strains that enable detection of a wide spectrum of mutational events. | Q35065478 | ||
| An underlying mechanism for the increased mutagenesis of lagging-strand genes in Bacillus subtilis | Q35189852 | ||
| UmuD'(2)C is an error-prone DNA polymerase, Escherichia coli pol V. | Q35588920 | ||
| Confounders of mutation-rate estimators: selection and phenotypic lag in Thermus thermophilus | Q35694505 | ||
| Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments | Q35765101 | ||
| Encoded errors: mutations and rearrangements mediated by misalignment at repetitive DNA sequences | Q35785283 | ||
| The replication-related organization of bacterial genomes. | Q35796723 | ||
| Proofreading DNA: recognition of aberrant DNA termini by the Klenow fragment of DNA polymerase I | Q35868344 | ||
| Mutation as a stress response and the regulation of evolvability | Q35869358 | ||
| The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia | Q35882379 | ||
| The properties of spontaneous mutations in the opportunistic pathogen Pseudomonas aeruginosa | Q35885995 | ||
| Azidothymidine and other chain terminators are mutagenic for template-switch-generated genetic mutations. | Q35924896 | ||
| Transcription-induced mutations: increase in C to T mutations in the nontranscribed strand during transcription in Escherichia coli | Q35937258 | ||
| Relative sensitivities of forward and reverse mutation assays in Salmonella typhimurium | Q35991299 | ||
| DNA repair and genome maintenance in Bacillus subtilis | Q36194928 | ||
| Topoisomerase 1-dependent deletions initiated by incision at ribonucleotides are biased to the non-transcribed strand of a highly activated reporter | Q36228037 | ||
| Anaerobically Grown Escherichia coli Has an Enhanced Mutation Rate and Distinct Mutational Spectra | Q36253780 | ||
| Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing | Q36268415 | ||
| Unequal fidelity of leading strand and lagging strand DNA replication on the Escherichia coli chromosome | Q36283328 | ||
| Model for the participation of quasi-palindromic DNA sequences in frameshift mutation | Q36302363 | ||
| Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. | Q36339832 | ||
| Drift-barrier hypothesis and mutation-rate evolution. | Q36389558 | ||
| Escherichia coli DNA polymerase III is responsible for the high level of spontaneous mutations in mutT strains | Q36566407 | ||
| Insertion sequences in prokaryotic genomes | Q36578722 | ||
| Exchange between Escherichia coli polymerases II and III on a processivity clamp | Q36627916 | ||
| Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli. | Q36646366 | ||
| The Effect of Local Sequence Context on Mutational Bias of Genes Encoded on the Leading and Lagging Strands | Q36665189 | ||
| Topoisomerase 1-mediated removal of ribonucleotides from nascent leading-strand DNA | Q36677913 | ||
| Efficient and accurate bypass of N2-(1-carboxyethyl)-2'-deoxyguanosine by DinB DNA polymerase in vitro and in vivo. | Q36735122 | ||
| Stationary phase mutagenesis in B. subtilis: a paradigm to study genetic diversity programs in cells under stress | Q36961669 | ||
| Stress-induced mutagenesis in bacteria. | Q36961683 | ||
| Whole-genome mutational biases in bacteria | Q36976728 | ||
| Comparison of responses to double-strand breaks between Escherichia coli and Bacillus subtilis reveals different requirements for SOS induction | Q37075405 | ||
| P433 | issue | 1 | |
| P304 | page(s) | 29-48 | |
| P577 | publication date | 2017-11-06 | |
| P1433 | published in | Critical Reviews in Biochemistry and Molecular Biology | Q5186661 |
| P1476 | title | Sources of spontaneous mutagenesis in bacteria | |
| P478 | volume | 53 |
| Q61807751 | Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have |
| Q55258904 | Heterogeneity of spontaneous DNA replication errors in single isogenic Escherichia coli cells. |
| Q53278372 | Influence of Electron-Holes on DNA Sequence-Specific Mutation Rates. |
| Q92891437 | Kick-starting evolution efficiency with an autonomous evolution mutation system |
| Q92256237 | Mutation and Recombination Rates Vary Across Bacterial Chromosome |
| Q58730084 | Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing |
| Q89241069 | Real-time dynamics of mutagenesis reveal the chronology of DNA repair and damage tolerance responses in single cells |
| Q90184013 | Selection of Thermotolerant Corynebacterium glutamicum Strains for Organic Acid Biosynthesis |
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