| scholarly article | Q13442814 |
| P819 | ADS bibcode | 2015PNAS..112E5990F |
| P356 | DOI | 10.1073/PNAS.1512136112 |
| P932 | PMC publication ID | 4640725 |
| P698 | PubMed publication ID | 26460006 |
| P5875 | ResearchGate publication ID | 282874525 |
| P50 | author | Patricia L. Foster | Q41469351 |
| P2093 | author name string | Haixu Tang | |
| Heewook Lee | |||
| Ellen Popodi | |||
| Jesse P Townes | |||
| P2860 | cites work | Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths | Q21090212 |
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| The complete genome sequence of Escherichia coli K-12 | Q27860542 | ||
| One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products | Q27860842 | ||
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| Mutagenesis by apurinic/apyrimidinic sites | Q28300337 | ||
| MutT protein specifically hydrolyses a potent mutagenic substrate for DNA synthesis | Q28343030 | ||
| Gene splicing and mutagenesis by PCR-driven overlap extension | Q29615338 | ||
| The GO system protects organisms from the mutagenic effect of the spontaneous lesion 8-hydroxyguanine (7,8-dihydro-8-oxoguanine) | Q29619959 | ||
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| Fluctuation analysis CalculatOR: a web tool for the determination of mutation rate using Luria-Delbruck fluctuation analysis | Q33430666 | ||
| Are adaptive mutations due to a decline in mismatch repair? The evidence is lacking | Q33545737 | ||
| A novel role for Escherichia coli endonuclease VIII in prevention of spontaneous G-->T transversions. | Q33638108 | ||
| Endonuclease V (nfi) mutant of Escherichia coli K-12 | Q33721853 | ||
| Role of the dinB gene product in spontaneous mutation in Escherichia coli with an impaired replicative polymerase | Q33792439 | ||
| Rapid and highly efficient method for scarless mutagenesis within the Salmonella enterica chromosome | Q33802758 | ||
| Investigating the mechanisms of ribonucleotide excision repair in Escherichia coli | Q33874331 | ||
| SOS mutator DNA polymerase IV functions in adaptive mutation and not adaptive amplification | Q33953638 | ||
| THE GENETIC STRUCTURE OF NATURAL POPULATIONS OF DROSOPHILA MELANOGASTER. I. SPONTANEOUS MUTATION RATE OF POLYGENES CONTROLLING VIABILITY | Q33981138 | ||
| Error‐prone DNA polymerase IV is controlled by the stress‐response sigma factor, RpoS, in Escherichia coli | Q34049897 | ||
| Adaptive mutation in Escherichia coli | Q34088211 | ||
| 8-oxoguanine (8-hydroxyguanine) DNA glycosylase and its substrate specificity | Q34119141 | ||
| Molecular basis of base substitution hotspots in Escherichia coli | Q34183770 | ||
| C. elegans whole-genome sequencing reveals mutational signatures related to carcinogens and DNA repair deficiency | Q34350141 | ||
| Translesion DNA synthesis and mutagenesis in prokaryotes. | Q34389241 | ||
| Prokaryotic nucleotide excision repair: the UvrABC system. | Q34492374 | ||
| Competition between MutY and mismatch repair at A x C mispairs In vivo | Q35162305 | ||
| Role of Escherichia coli DNA polymerase IV in in vivo replication fidelity | Q35271644 | ||
| Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants | Q35624116 | ||
| Repairing DNA-methylation damage | Q35709509 | ||
| Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments | Q35765101 | ||
| holE, the gene coding for the theta subunit of DNA polymerase III of Escherichia coli: characterization of a holE mutant and comparison with a dnaQ (epsilon-subunit) mutant | Q36105121 | ||
| DNA alkylation repair limits spontaneous base substitution mutations in Escherichia coli | Q36107979 | ||
| In search of a mutational hotspot | Q36203369 | ||
| Escherichia coli strains with multiple DNA repair defects are hyperinduced for the SOS response | Q36256490 | ||
| Endonuclease IV (nfo) mutant of Escherichia coli | Q36261707 | ||
| Replication-transcription conflicts in bacteria. | Q36307709 | ||
| Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. | Q36339832 | ||
| The unusual mutagenic specificity of an E. Coli mutator gene | Q36456280 | ||
| Escherichia coli DNA polymerase III is responsible for the high level of spontaneous mutations in mutT strains | Q36566407 | ||
| On the mutational topology of the bacterial genome | Q36642223 | ||
| Recombineering: in vivo genetic engineering in E. coli, S. enterica, and beyond | Q36757817 | ||
| No gene-specific optimization of mutation rate in Escherichia coli | Q36935351 | ||
| Stress-induced mutagenesis in bacteria. | Q36961683 | ||
| Evidence that MutY and MutM combine to prevent mutations by an oxidatively damaged form of guanine in DNA | Q37132610 | ||
| DNA polymerase switching: effects on spontaneous mutagenesis in Escherichia coli | Q37188497 | ||
| Polymerases leave fingerprints: analysis of the mutational spectrum in Escherichia coli rpoB to assess the role of polymerase IV in spontaneous mutation | Q37424859 | ||
| Increased motility of Escherichia coli by insertion sequence element integration into the regulatory region of the flhD operon | Q37596086 | ||
| Mapping structurally defined guanine oxidation products along DNA duplexes: influence of local sequence context and endogenous cytosine methylation | Q37701731 | ||
| The endonuclease IV family of apurinic/apyrimidinic endonucleases | Q37776340 | ||
| Transcription-coupled DNA repair in prokaryotes | Q38022931 | ||
| Endonuclease V: an unusual enzyme for repair of DNA deamination | Q38069442 | ||
| Transcription-associated mutagenesis | Q38253934 | ||
| Spontaneous mutation rates come into focus in Escherichia coli | Q38259429 | ||
| MutY-glycosylase: an overview on mutagenesis and activities beyond the GO system | Q38378258 | ||
| Protein family classification based on searching a database of blocks | Q38568514 | ||
| Escherichia coli MutY protein has a guanine-DNA glycosylase that acts on 7,8-dihydro-8-oxoguanine:guanine mispair to prevent spontaneous G:C-->C:G transversions | Q39725401 | ||
| Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli | Q39842494 | ||
| Characterization of endonuclease III (nth) and endonuclease VIII (nei) mutants of Escherichia coli K-12. | Q39846025 | ||
| Paradoxical hotspots for guanine oxidation by a chemical mediator of inflammation | Q40271694 | ||
| Newly identified genetic variations in common Escherichia coli MG1655 stock cultures | Q40346767 | ||
| Detection of messenger RNA from the isoleucine-valine operons of Salmonella typhimurium by heterologous DNA-RNA hybridization: Involvement of transfer RNA in transcriptional repression | Q40783410 | ||
| Isolation and characterization of mutants of Escherichia coli deficient in induction of mutations by ultraviolet light | Q40850491 | ||
| Mechanisms of directed mutation | Q41110210 | ||
| On fluctuation analysis: a new, simple and efficient method for computing the expected number of mutants | Q41645462 | ||
| Mapping of peroxyl radical induced damage on genomic DNA. | Q41708484 | ||
| Mechanisms of spontaneous and induced frameshift mutation in bacteriophage T4. | Q41879395 | ||
| DNA sequence context as a determinant of the quantity and chemistry of guanine oxidation produced by hydroxyl radicals and one-electron oxidants | Q41932407 | ||
| An aerobic recA-, umuC-dependent pathway of spontaneous base-pair substitution mutagenesis in Escherichia coli | Q42498856 | ||
| Methods for determining spontaneous mutation rates | Q42620101 | ||
| DNA repair excision nuclease attacks undamaged DNA. A potential source of spontaneous mutations | Q43608425 | ||
| A repair system for 8-oxo-7,8-dihydrodeoxyguanine | Q43687308 | ||
| Roles of chromosomal and episomal dinB genes encoding DNA pol IV in targeted and untargeted mutagenesis in Escherichia coli. | Q43781879 | ||
| Interactions among the Escherichia coli mutT, mutM, and mutY damage prevention pathways | Q44280600 | ||
| Stress-induced mutagenesis in bacteria | Q44459277 | ||
| Spontaneous mutagenesis associated with nucleotide excision repair in Escherichia coli | Q45401435 | ||
| Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair | Q46617407 | ||
| Effect of deletion of SOS-induced polymerases, pol II, IV, and V, on spontaneous mutagenesis in Escherichia coli mutD5. | Q47609306 | ||
| Effects on sister chromatid exchange frequency of aldehyde dehydrogenase 2 genotype and smoking in vinyl chloride workers. | Q53428596 | ||
| Much of spontaneous mutagenesis in Escherichia coli is due to error-prone DNA repair: implications for spontaneous carcinogenesis. | Q54542097 | ||
| Enzymatic processing of radiation-induced free radical damage in DNA | Q62061101 | ||
| NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site | Q68189284 | ||
| Spectra of superoxide-induced mutations in the lacI gene of a wild-type and a mutM strain of Escherichia coli K-12 | Q71668940 | ||
| A UmuD,C-dependent pathway for spontaneous G:C to C:G transversions in stationary phase Escherichia coli mut Y | Q73094277 | ||
| Characterization of a novel 8-oxoguanine-DNA glycosylase activity in Escherichia coli and identification of the enzyme as endonuclease VIII | Q73914620 | ||
| Mutagenicity and repair of oxidative DNA damage: insights from studies using defined lesions | Q95807087 | ||
| P433 | issue | 44 | |
| P407 | language of work or name | English | Q1860 |
| P921 | main subject | Escherichia coli | Q25419 |
| urban ecology | Q1430301 | ||
| whole genome sequencing | Q2068526 | ||
| P304 | page(s) | E5990-9 | |
| P577 | publication date | 2015-10-12 | |
| P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
| P1476 | title | Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing | |
| P478 | volume | 112 |
| Q47172267 | "Evolution of a dominant natural isolate of Escherichia coli in the human gut over a year suggests a neutral evolution with reduced effective population size". |
| Q36395746 | A shifting mutational landscape in 6 nutritional states: Stress-induced mutagenesis as a series of distinct stress input-mutation output relationships. |
| Q37685579 | Adaptation of Escherichia coli to Long-Term Serial Passage in Complex Medium: Evidence of Parallel Evolution |
| Q61807751 | Aerobic prokaryotes do not have higher GC contents than anaerobic prokaryotes, but obligate aerobic prokaryotes have |
| Q28386555 | Antibiotic treatment enhances the genome-wide mutation rate of target cells |
| Q90505681 | Bacterial phenotypic heterogeneity in DNA repair and mutagenesis |
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| Q62594873 | Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective |
| Q40540697 | Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in Vibrio cholerae and Vibrio fischeri |
| Q58696045 | Insertion sequence elements-mediated structural variations in bacterial genomes |
| Q37228914 | Insertion sequence-caused large-scale rearrangements in the genome of Escherichia coli |
| Q38812569 | Isolating Escherichia coli strains for recombinant protein production |
| Q57094057 | Mutation Landscape of Base Substitutions, Duplications, and Deletions in the Representative Current Cholera Pandemic Strain |
| Q92256237 | Mutation and Recombination Rates Vary Across Bacterial Chromosome |
| Q38711741 | Mutational biases influence parallel adaptation |
| Q46274173 | Mutator genomes decay, despite sustained fitness gains, in a long-term experiment with bacteria |
| Q60939386 | Old Trade, New Tricks: Insights into the Spontaneous Mutation Process from the Partnering of Classical Mutation Accumulation Experiments with High-Throughput Genomic Approaches |
| Q58730084 | Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing |
| Q60916118 | Predicting mutational routes to new adaptive phenotypes |
| Q57802938 | Prophage-driven genomic structural changes promote Bartonella vertical evolution |
| Q64068826 | Rapid cell division of Staphylococcus aureus during colonization of the human nose |
| Q90288980 | Real-time visualization of mutations and their fitness effects in single bacteria |
| Q41089878 | Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts. |
| Q60359855 | Single-nucleotide-resolution mapping of DNA gyrase cleavage sites across the Escherichia coli genome. |
| Q50134974 | Sources of spontaneous mutagenesis in bacteria. |
| Q90746488 | Spatial Vulnerabilities of the Escherichia coli Genome to Spontaneous Mutations Revealed with Improved Duplex Sequencing |
| Q33757179 | Spontaneous Mutation Rate in the Smallest Photosynthetic Eukaryotes |
| Q36646366 | Strand-biased cytosine deamination at the replication fork causes cytosine to thymine mutations in Escherichia coli. |
| Q42442021 | Sugar Synthesis from CO2 in Escherichia coli |
| Q58695096 | Temperature responses of mutation rate and mutational spectrum in an Escherichia coli strain and the correlation with metabolic rate |
| Q41625361 | The Accelerated Evolution of Lagging Strand Genes Is Independent of Sequence Context |
| Q36665189 | The Effect of Local Sequence Context on Mutational Bias of Genes Encoded on the Leading and Lagging Strands |
| Q90218788 | The Escherichia coli alkA Gene Is Activated to Alleviate Mutagenesis by an Oxidized Deoxynucleoside |
| Q42694955 | The Fitness Effects of Spontaneous Mutations Nearly Unseen by Selection in a Bacterium with Multiple Chromosomes |
| Q49320136 | The Odyssey of the Ancestral Escherich Strain through Culture Collections: an Example of Allopatric Diversification |
| Q62594877 | The Spectrum of Replication Errors in the Absence of Error Correction Assayed Across the Whole Genome of |
| Q49957624 | Variation in Mutational Robustness between Different Proteins and the Predictability of Fitness Effects. |
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