Experimental evolution in biofilm populations.

scientific article

Experimental evolution in biofilm populations. is …
instance of (P31):
scholarly articleQ13442814
review articleQ7318358

External links are
P356DOI10.1093/FEMSRE/FUW002
P3181OpenCitations bibliographic resource ID3239922
P932PMC publication ID4852284
P698PubMed publication ID26895713
P5875ResearchGate publication ID295247978

P50authorKevin R. FosterQ41050355
P2093author name stringHans P Steenackers
Akanksha Dubey
Jozef Vanderleyden
Ilse Parijs
P2860cites workEVOLUTION IN MENDELIAN POPULATIONSQ5418627
Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosaQ21144908
Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 GenerationsQ22066139
Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptationQ22122024
Microbial biofilmsQ22255624
Evolution of resistance to a last-resort antibiotic in Staphylococcus aureus via bacterial competitionQ24490083
Rates of spontaneous mutationQ24548000
Diversity-disturbance relationships: frequency and intensity interactQ24601587
Experimental evolution of aging in a bacteriumQ24670266
Cyclic di-GMP: the first 25 years of a universal bacterial second messengerQ26850396
Social evolution theory for microorganisms.Q36538101
Exploiting social evolution in biofilms.Q36823972
Accumulation of mutants in "aging" bacterial colonies is due to growth under selection, not stress-induced mutagenesisQ36836273
Endogenous oxidative stress produces diversity and adaptability in biofilm communitiesQ36858633
Formation of Streptococcus pneumoniae non-phase-variable colony variants is due to increased mutation frequency present under biofilm growth conditionsQ36933242
Whole-genome mutational biases in bacteriaQ36976728
Environmental influences on biofilm development.Q37153206
Cooperation and virulence of clinical Pseudomonas aeruginosa populationsQ37158959
Pseudomonas aeruginosa rugose small-colony variants have adaptations that likely promote persistence in the cystic fibrosis lungQ37191781
Resource limitation drives spatial organization in microbial groupsQ37268158
Evolution of diversity in spatially structured Escherichia coli populationsQ37365295
Evolving concepts in biofilm infectionsQ37449114
Toward a general theory of adaptive radiation: insights from microbial experimental evolutionQ37536208
A mechanistic explanation linking adaptive mutation, niche change, and fitness advantage for the wrinkly spreaderQ37556879
Chapter 4: In vitro biofilm models: an overviewQ37591599
Solutions to the public goods dilemma in bacterial biofilmsQ37604315
Self-generated diversity produces "insurance effects" in biofilm communitiesQ37621081
Importance of positioning for microbial evolution.Q37725337
The genotypic view of social interactions in microbial communities.Q34982102
Environmental modification and niche construction: developing O2 gradients drive the evolution of the Wrinkly Spreader.Q35018785
Understanding biofilm resistance to antibacterial agentsQ35058558
Widening the spaces of selection: evolution along sublethal antimicrobial gradientsQ35072145
Character displacement and the evolution of niche complementarity in a model biofilm communityQ35105084
Massive diversification in aging colonies of Escherichia coliQ35198922
Spatial population expansion promotes the evolution of cooperation in an experimental Prisoner's DilemmaQ35516454
Cooperation and conflict in microbial biofilms.Q35612336
Frequency-based haplotype reconstruction from deep sequencing data of bacterial populationsQ35635610
Characterization of colony morphology variants isolated from Streptococcus pneumoniae biofilmsQ35759418
Evidence for multiple adaptive peaks from populations of bacteria evolving in a structured habitatQ35760235
A tortoise-hare pattern seen in adapting structured and unstructured populations suggests a rugged fitness landscape in bacteriaQ35764270
Mutation as a stress response and the regulation of evolvabilityQ35869358
The ecology and genetics of microbial diversity.Q35919843
Clonal interference in large populationsQ36156834
Parallel genetic changes and nonparallel gene-environment interactions characterize the evolution of drug resistance in yeastQ36198245
Tangled bank of experimentally evolved Burkholderia biofilms reflects selection during chronic infectionsQ33455287
Role of mutation in Pseudomonas aeruginosa biofilm development.Q33482815
Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populationsQ33523627
Emergence of spatial structure in cell groups and the evolution of cooperationQ33545212
Ecological opportunity and the origin of adaptive radiationsQ33609183
Ecological succession in long-term experimentally evolved biofilms produces synergistic communitiesQ33681991
cAMP-dependent SOS induction and mutagenesis in resting bacterial populations.Q33719467
Beneficial mutations and the dynamics of adaptation in asexual populations.Q33856627
Plant diversity and productivity experiments in european grasslandsQ33879171
Bacterial genome size reduction by experimental evolutionQ33922858
Mutation frequencies and antibiotic resistanceQ33945503
Evidence for the adaptive evolution of mutation ratesQ33967135
Medicine. Combating evolution to fight diseaseQ33980301
Evolution and adaptation in Pseudomonas aeruginosa biofilms driven by mismatch repair system-deficient mutators.Q34082906
Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo.Q34128914
Rethinking adaptation: the niche-construction perspectiveQ34176793
A fitness trade-off between local competition and dispersal in Vibrio cholerae biofilms.Q34206689
Repeatability and contingency in the evolution of a key innovation in phage lambdaQ34250057
Biofilm formation at the air-liquid interface by the Pseudomonas fluorescens SBW25 wrinkly spreader requires an acetylated form of cellulose.Q34264820
Experimental evolutionQ34289524
Evolving responsively: adaptive mutationQ34297067
The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.Q34331592
Pervasive genetic hitchhiking and clonal interference in forty evolving yeast populationsQ34358875
The rise and fall of antimicrobial resistanceQ34366444
COMPETITION, HABITAT SELECTION, AND CHARACTER DISPLACEMENT IN A PATCHY ENVIRONMENTQ34408389
Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiaeQ34415662
Increased mutability of Staphylococci in biofilms as a consequence of oxidative stressQ34460524
The biological cost of mutational antibiotic resistance: any practical conclusions?Q34554396
The evolution of antibiotic susceptibility and resistance during the formation of Escherichia coli biofilms in the absence of antibioticsQ34565434
Population diversification in Staphylococcus aureus biofilms may promote dissemination and persistenceQ34706784
Evolutionary limits to cooperation in microbial communitiesQ34752307
The sociobiology of biofilms.Q34899346
Evolutionary dynamics of bacteria in a human host environmentQ34937408
Evolution of species interactions in a biofilm communityQ59055799
Disturbance and diversity in experimental microcosmsQ59060514
High Deleterious Genomic Mutation Rate in Stationary Phase of Escherichia coliQ60057535
Competitive and Facilitative Evolutionary DiversificationQ60492173
Interspecific competition and siderophore-mediated cooperation in Pseudomonas aeruginosaQ62662305
In Vivo Models of Biofilm InfectionQ63762096
Antibiotic-selective environmentsQ77117010
Biofilm diversity as a test of the insurance hypothesisQ81188546
Microevolution of the major common Pseudomonas aeruginosa clones C and PA14 in cystic fibrosis lungsQ83862019
Quorum-sensing autoinducer molecules produced by members of a multispecies biofilm promote horizontal gene transfer to Vibrio choleraeQ84317412
Acceleration of emergence of bacterial antibiotic resistance in connected microenvironmentsQ84975610
The evolution of biofilm-forming Wrinkly Spreaders in static microcosms and drip-fed columns selects for subtle differences in wrinkleality and fitnessQ85197115
The evolution of quorum sensing in bacterial biofilmsQ27333799
The Competitive Exclusion PrincipleQ28202954
Evolution of mutation rates in bacteriaQ28238561
The genetical evolution of social behaviour. IQ28256872
Rapid evolution of culture-impaired bacteria during adaptation to biofilm growthQ28492531
Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coliQ28647522
Genome dynamics during experimental evolutionQ28651650
Parallel evolutionary dynamics of adaptive diversification in Escherichia coliQ28708794
Social evolution in multispecies biofilmsQ28742796
Overshooting dynamics in a model adaptive radiationQ28743786
Adaptive divergence in experimental populations of Pseudomonas fluorescens. I. Genetic and phenotypic bases of wrinkly spreader fitnessQ28768990
Bacterial biofilms: from the natural environment to infectious diseasesQ29547677
Clonal evolution in cancerQ29547696
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patientsQ29615301
Principles of c-di-GMP signalling in bacteriaQ29615333
Identification of the mutation responsible for the temperature-sensitive lipopolysaccharide O-antigen defect in the Pseudomonas aeruginosa cystic fibrosis isolate 2192.Q30416945
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.Q30426714
Genetic drift at expanding frontiers promotes gene segregationQ30480896
On the rapidity of antibiotic resistance evolution facilitated by a concentration gradient.Q30519515
Adaptive divergence in experimental populations of Pseudomonas fluorescens. V. Insight into the niche specialist fuzzy spreader compels revision of the model Pseudomonas radiationQ30557416
Strain-specific parallel evolution drives short-term diversification during Pseudomonas aeruginosa biofilm formationQ30576045
Density of founder cells affects spatial pattern formation and cooperation in Bacillus subtilis biofilms.Q30588827
Diversity and productivity in a long-term grassland experiment.Q30756782
The diversity-stability debateQ30872585
Validation of an in vitro biofilm model of supragingival plaqueQ30984387
Ecological constraints on diversification in a model adaptive radiationQ31122368
Rapid diffusion of fluorescent tracers into Staphylococcus epidermidis biofilms visualized by time lapse microscopyQ31143843
Biodiversity and ecosystem productivity in a fluctuating environment: the insurance hypothesisQ31904230
The contribution of species richness and composition to bacterial servicesQ33222231
Phenotypic diversification and adaptation of Serratia marcescens MG1 biofilm-derived morphotypesQ33261957
Niche occupation limits adaptive radiation in experimental microcosmsQ33272545
Immigration history controls diversification in experimental adaptive radiationQ33279629
Microbial composition and structure of aerobic granular sewage biofilmsQ33294399
Physiological heterogeneity in biofilmsQ33319084
Heterogeneous adaptive trajectories of small populations on complex fitness landscapesQ33322521
An equivalence principle for the incorporation of favorable mutations in asexual populationsQ50736355
Experimental evolution of Pseudomonas fluorescens in simple and complex environments.Q51339254
Fatal outcome of lung transplantation in cystic fibrosis patients due to small-colony variants of the Burkholderia cepacia complex.Q51678317
In vitro biofilm model for studying tongue flora and malodour.Q51701589
Source-sink dynamics shape the evolution of antibiotic resistance and its pleiotropic fitness cost.Q51705053
Character displacement promotes cooperation in bacterial biofilms.Q51719331
A framework for multidimensional modelling of activity and structure of multispecies biofilms.Q51969475
Individual-based modelling of biofilms.Q52051890
Social evolution of spatial patterns in bacterial biofilms: when conflict drives disorder.Q52697512
Quorum-sensing and cheating in bacterial biofilms.Q53358489
Unraveling adaptive evolution: how a single point mutation affects the protein coregulation network.Q53590340
Evolution of cooperation and conflict in experimental bacterial populations.Q53651280
The effect of population structure on the adaptive radiation of microbial populations evolving in spatially structured environments.Q54457257
Fitness effects of fixed beneficial mutations in microbial populations.Q54541810
Adaptive radiation in a heterogeneous environmentQ56038387
The Fate of Mutations Surfing on the Wave of a Range ExpansionQ57197882
In vitro and in vivo model systems to study microbial biofilm formation.Q37785256
Next-generation sequencing as a tool to study microbial evolution.Q37793329
Adaptation of Pseudomonas aeruginosa during persistence in the cystic fibrosis lungQ37799900
Experimental evolution, loss-of-function mutations, and "the first rule of adaptive evolution".Q37829721
Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.Q37983903
The interconnection between biofilm formation and horizontal gene transferQ37996597
Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspectiveQ38059441
The in vivo biofilmQ38119280
The genetic causes of convergent evolutionQ38150710
Interactions in multispecies biofilms: do they actually matter?Q38179713
Biofilm formation by clinical isolates and its relevance to clinical infectionsQ38264633
Antimicrobial resistance, respiratory tract infections and role of biofilms in lung infections in cystic fibrosis patientsQ38283496
Giving structure to the biofilm matrix: an overview of individual strategies and emerging common themesQ38439183
Gene expression variability in clonal populations: Causes and consequencesQ38686945
The effect of spatial structure on adaptation in Escherichia coliQ38844301
Experimental evolution reveals hidden diversity in evolutionary pathways.Q39025569
Interfering waves of adaptation promote spatial mixing.Q39028906
Initiation of biofilm formation by Pseudomonas aeruginosa 57RP correlates with emergence of hyperpiliated and highly adherent phenotypic variants deficient in swimming, swarming, and twitching motilitiesQ39502437
Genotypic and phenotypic variation in Pseudomonas aeruginosa reveals signatures of secondary infection and mutator activity in certain cystic fibrosis patients with chronic lung infectionsQ39656697
Mutators in space: the dynamics of high-mutability clones in a two-patch modelQ40507706
Particle-based multidimensional multispecies biofilm modelQ40512396
Clonal interference and the evolution of RNA viruses.Q40929879
Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutationQ41366386
There and back again: consequences of biofilm specialization under selection for dispersal.Q41463308
Parallel evolution of small colony variants in Burkholderia cenocepacia biofilmsQ41724090
Generation of virulence factor variants in Staphylococcus aureus biofilms.Q41776223
Adhesion as a weapon in microbial competitionQ41900342
Characterization of colony morphology variants isolated from Pseudomonas aeruginosa biofilmsQ42105451
Spatial structure increases the waiting time for cancer.Q42202619
Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotypeQ42420694
Adaptive divergence in experimental populations of Pseudomonas fluorescens. IV. Genetic constraints guide evolutionary trajectories in a parallel adaptive radiationQ42645949
Spontaneous sequence duplication within an open reading frame of the pneumococcal type 3 capsule locus causes high-frequency phase variationQ42671880
agr function in clinical Staphylococcus aureus isolates.Q42732301
Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversityQ42745391
Real-time microbial adaptive diversification in soilQ44223469
Stress-induced mutagenesis in bacteriaQ44459277
Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis.Q46002328
Adaptive evolution in single species bacterial biofilmsQ46084138
Increased mutability of Pseudomonas aeruginosa in biofilmsQ46767850
Natural human isolates of Staphylococcus aureus selected for high production of proteases and alpha-hemolysin are sigmaB deficientQ47218990
Ecological and genetic spatial structuring in the Canadian lynxQ47312165
Gene surfing in expanding populationsQ48377569
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue3
P407language of work or nameEnglishQ1860
P921main subjectbiofilmQ467410
experimental evolutionQ3592884
bacterial structuresQ70189616
P304page(s)373-397
P577publication date2016-02-18
P1433published inFEMS Microbiology ReviewsQ15762226
P1476titleExperimental evolution in biofilm populations
P478volume40

Reverse relations

cites work (P2860)
Q46361939Adaptive radiation of Pseudomonas fluorescens SBW25 in experimental microcosms provides an understanding of the evolutionary ecology and molecular biology of A-L interface biofilm formation
Q64058697Bacterial community dynamics in lait caillé, a traditional product of spontaneous fermentation from Senegal
Q92767542Chance and pleiotropy dominate genetic diversity in complex bacterial environments
Q42289561De novo evolved interference competition promotes the spread of biofilm defectors
Q94450979Division of labour in a matrix, rather than phagocytosis or endosymbiosis, as a route for the origin of eukaryotic cells
Q90317101Dynamics of bacterial population growth in biofilms resemble spatial and structural aspects of urbanization
Q89572861EVOLVING POPULATIONS IN BIOFILMS CONTAIN MORE PERSISTENT PLASMIDS
Q90495485Efficient inter-species conjugative transfer of a CRISPR nuclease for targeted bacterial killing
Q92982102Environmentally Mediated Social Dilemmas
Q83227516Evolutionary pathways to antibiotic resistance are dependent upon environmental structure and bacterial lifestyle
Q38611128Extracellular-matrix-mediated osmotic pressure drives Vibrio cholerae biofilm expansion and cheater exclusion
Q37616727Flow environment and matrix structure interact to determine spatial competition in Pseudomonas aeruginosa biofilms
Q58602400Fungal persister cells: The basis for recalcitrant infections?
Q92283288IAMBEE: a web-service for the identification of adaptive pathways from parallel evolved clonal populations
Q92527380Inhibiting bacterial cooperation is an evolutionarily robust anti-biofilm strategy
Q38798096Laboratory Evolution of Microbial Interactions in Bacterial Biofilms
Q88573537Maximizing Growth Yield and Dispersal via Quorum Sensing Promotes Cooperation in Vibrio Bacteria
Q98202475Mechanisms Protecting Acinetobacter baumannii against Multiple Stresses Triggered by the Host Immune Response, Antibiotics and Outside-Host Environment
Q28066856Microbial Biofilms in Urinary Tract Infections and Prostatitis: Etiology, Pathogenicity, and Combating strategies
Q46527792Network-Based Identification of Adaptive Pathways in Evolved Ethanol-Tolerant Bacterial Populations.
Q40771971New Insights into the Effects of Several Environmental Parameters on the Relative Fitness of a Numerically Dominant Class of Evolved Niche Specialist
Q88525551Novel Method for Quantitative Estimation of Biofilms
Q61809679Same Organism, Different Phenotype - Are Phenotypic Criteria Adequate In Coagulase-Negative Staphylococcal Orthopaedic Implant-Associated Infections?
Q40504881Stenotrophomonas maltophilia Phenotypic and Genotypic Diversity during a 10-year Colonization in the Lungs of a Cystic Fibrosis Patient
Q47422645Swimming and rafting of E.coli microcolonies at air-liquid interfaces.
Q39158690Symbiosis in eukaryotic evolution.
Q83227511The road to resistance
Q64068057Tolerance and Resistance of Pseudomonas aeruginosa Biofilms to Antimicrobial Agents—How P. aeruginosa Can Escape Antibiotics

Search more.