Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.

scientific article

Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B. is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1128/JB.183.9.2834-2841.2001
P932PMC publication ID99500
P698PubMed publication ID11292803
P5875ResearchGate publication ID12040869

P50authorRichard LenskiQ713637
Vaughn S. CooperQ41050411
P2093author name stringD Schneider
M Blot
P2860cites workDNA sequencing with chain-terminating inhibitorsQ22066207
Mutations of Bacteria from Virus Sensitivity to Virus ResistanceQ24533278
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Selection in chemostatsQ24654595
The complete genome sequence of Escherichia coli K-12Q27860542
Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populationsQ28245607
A constant rate of spontaneous mutation in DNA-based microbesQ28271032
The distribution of the numbers of mutants in bacterial populationsQ29620123
Periodic selection in Escherichia coliQ33711273
Parallel and divergent genotypic evolution in experimental populations of Ralstonia spQ33736264
Rapid evolution of a geographic cline in size in an introduced fly.Q33886509
The population genetics of ecological specialization in evolving Escherichia coli populationsQ33922714
Evolution of high mutation rates in experimental populations of E. coliQ34429727
Test of synergistic interactions among deleterious mutations in bacteriaQ34448329
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangementsQ34610582
Genetics of host-controlled restriction and modification of deoxyribonucleic acid in Escherichia coliQ35176270
Molecular cloning and characterization of genes required for ribose transport and utilization in Escherichia coli K-12Q36300413
Genomic evolution during a 10,000-generation experiment with bacteriaQ36451882
Construction of an eae deletion mutant of enteropathogenic Escherichia coli by using a positive-selection suicide vectorQ36989608
Evolution of the D-ribose operon on Escherichia coli B/rQ39971943
Transposable elements and adaptation of host bacteriaQ40564752
Fluctuation tests: how reliable are the estimates of mutation rates?Q42825321
The fate of competing beneficial mutations in an asexual population.Q54262235
Role of mutator alleles in adaptive evolution.Q54564129
LONG-TERM EXPERIMENTAL EVOLUTION IN ESCHERICHIA COLI. III. VARIATION AMONG REPLICATE POPULATIONS IN CORRELATED RESPONSES TO NOVEL ENVIRONMENTS.Q54617461
Diminishing Returns from Mutation Supply Rate in Asexual PopulationsQ56920120
Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coliQ58870925
Transposable elements as mutator genes in evolutionQ59084250
An inexpensive alternative to glassmilk for DNA purificationQ72653825
Parallel molecular evolution of deletions and nonsense mutations in bacteriophage T7Q72990123
Homocysteine thiolactone is a positive effector of sigma(S) levels in Escherichia coliQ73644292
P433issue9
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
P304page(s)2834-2841
P577publication date2001-05-01
P1433published inJournal of BacteriologyQ478419
P1476titleMechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B
P478volume183

Reverse relations

cites work (P2860)
Q36155460A Comparison of the Costs and Benefits of Bacterial Gene Expression
Q36182021A Mutational Hotspot and Strong Selection Contribute to the Order of Mutations Selected for during Escherichia coli Adaptation to the Gut
Q24797280A model combining cell physiology and population genetics to explain Escherichia coli laboratory evolution
Q42250832A model for genome size evolution
Q36059490A survey of bacterial insertion sequences using IScan
Q36596823Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria
Q28647522Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli
Q42420694Adaptive divergence in experimental populations of Pseudomonas fluorescens. II. Role of the GGDEF regulator WspR in evolution and development of the wrinkly spreader phenotype
Q42745391Adaptive divergence in experimental populations of Pseudomonas fluorescens. III. Mutational origins of wrinkly spreader diversity
Q33269801Adaptive diversification in genes that regulate resource use in Escherichia coli
Q35316311Adaptive evolution of synthetic cooperating communities improves growth performance
Q55339992Adaptive genome duplication affects patterns of molecular evolution in Saccharomyces cerevisiae.
Q34626340Adaptive regulatory substitutions affect multiple stages in the life cycle of the bacteriophage φX174
Q35573535An Escherichia coli strain, PGB01, isolated from feral pigeon Faeces, thermally fit to survive in pigeon, shows high level resistance to trimethoprim
Q35808475An experimental test of evolutionary trade-offs during temperature adaptation
Q28534615Bacterial adaptation through loss of function
Q38103942Bacterial genome evolution within a clonal population: from in vitro investigations to in vivo observations
Q41688854Beyond the Black Queen Hypothesis
Q64063950Changes in Intrinsic Antibiotic Susceptibility during a Long-Term Evolution Experiment with Escherichia coli
Q35710313Chlamydia trachomatis In Vivo to In Vitro Transition Reveals Mechanisms of Phase Variation and Down-Regulation of Virulence Factors
Q36245767Comparative genomics and experimental evolution of Escherichia coli BL21(DE3) strains reveal the landscape of toxicity escape from membrane protein overproduction
Q42557087Compensatory evolution of gene regulation in response to stress by Escherichia coli lacking RpoS.
Q42673777Competition between transposable elements and mutator genes in bacteria
Q28768673Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor
Q33608467Core Genes Evolve Rapidly in the Long-term Evolution Experiment with Escherichia coli
Q34725734Decay of unused characters by selection and drift
Q33735386Designing and engineering evolutionary robust genetic circuits.
Q34992854Detecting rare structural variation in evolving microbial populations from new sequence junctions using breseq
Q47660844Distant horizontal gene transfer is rare for multiple families of prokaryotic insertion sequences
Q51300318Diverse phenotypic and genetic responses to short-term selection in evolving Escherichia coli populations.
Q47164230Dose-dependent selection drives lineage replacement during the experimental evolution of SDHI fungicide resistance in Zymoseptoria tritici.
Q38403177Dynamics and genetic diversification of Escherichia coli during experimental adaptation to an anaerobic environment
Q89890116Encapsulation enhances protoplast fusant stability
Q35154155Environmental isolates of Aeromonas spp. harboring the cagA-like gene of Helicobacter pylori
Q34383891Erosion of functional independence early in the evolution of a microbial mutualism.
Q38810622Evolution by gene loss.
Q27485643Evolution of a single niche specialist in variable environments
Q24644443Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli
Q47619645Evolution: Revenge of the hopeful monster
Q24564036Evolutionary genomics of ecological specialization
Q37983903Evolutionary insight from whole-genome sequencing of experimentally evolved microbes.
Q47928367Evolutionary loss of the rdar morphotype in Salmonella as a result of high mutation rates during laboratory passage
Q55038107Experimental Evolution as a High-Throughput Screen for Genetic Adaptations.
Q39891212Experimental adaptation of Burkholderia cenocepacia to onion medium reduces host range.
Q34569582Experimental adaptation of Salmonella typhimurium to mice
Q38683209Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations
Q42283815Experimental evolution of the grain of metabolic specialization in yeast
Q99551370Experimental evolution reveals nitrate tolerance mechanisms in Desulfovibrio vulgaris
Q33523627Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations
Q33320201Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli
Q36410897First-Step Mutations during Adaptation Restore the Expression of Hundreds of Genes
Q35067774Functional and metabolic effects of adaptive glycerol kinase (GLPK) mutants in Escherichia coli
Q38522973Functional fingerprints of folds: evidence for correlated structure-function evolution
Q34433216Genetic Evolution of the Spanish Multidrug-Resistant Salmonella enterica 4,5,12:i:- Monophasic Variant
Q36873735Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth
Q28651650Genome dynamics during experimental evolution
Q22122199Genome evolution and adaptation in a long-term experiment with Escherichia coli
Q35074936Genome instability mediates the loss of key traits by Acinetobacter baylyi ADP1 during laboratory evolution
Q24797871Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers
Q21144908Genomics of adaptation during experimental evolution of the opportunistic pathogen Pseudomonas aeruginosa
Q22066316Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
Q30977057ISQuest: finding insertion sequences in prokaryotic sequence fragment data
Q33521105Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli
Q30872404Identifying structural variation in haploid microbial genomes from short-read resequencing data using breseq
Q93047512Inactivation of a Mismatch-Repair System Diversifies Genotypic Landscape of Escherichia coli During Adaptive Laboratory Evolution
Q28764749Increased susceptibility to repeated freeze-thaw cycles in Escherichia coli following long-term evolution in a benign environment
Q51561384Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining.
Q54365525Insertion sequence-driven evolution of Escherichia coli in chemostats.
Q34487734Insertion sequences as highly resolutive genomic markers for sequence type 1 Legionella pneumophila Paris
Q41992183Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis
Q42424977Intergenic transposable elements are not randomly distributed in bacteria
Q34237811Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli
Q45261637Long-term dynamics of adaptation in asexual populations
Q24800384Long-term experimental evolution in Escherichia coli. X. Quantifying the fundamental and realized niche.
Q34570839Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection
Q34431559Long-term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphism
Q35073423Loss of catabolic function in Streptococcus agalactiae strains and its association with neonatal meningitis
Q34157632Loss of dispensable genes is not adaptive in yeast
Q38504593Loss of expression of cspC, a cold shock family gene, confers a gain of fitness in Escherichia coli K-12 strains
Q36470521Metabolic changes associated with adaptive diversification in Escherichia coli
Q34405876Metabolic erosion primarily through mutation accumulation, and not tradeoffs, drives limited evolution of substrate specificity in Escherichia coli
Q92141659Microbial Experimental Evolution - a proving ground for evolutionary theory and a tool for discovery
Q22122024Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptation
Q33716983Molecular and evolutionary bases of within-patient genotypic and phenotypic diversity in Escherichia coli extraintestinal infections
Q37583225Molecular basis of the indole-negative reaction in Shigella strains: extensive damages to the tna operon by insertion sequences
Q34386931Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucose
Q37997288New insights into bacterial adaptation through in vivo and in silico experimental evolution
Q37793329Next-generation sequencing as a tool to study microbial evolution.
Q42419706OASIS: an automated program for global investigation of bacterial and archaeal insertion sequences
Q42169118On the experimental evolution of specialization and diversity in heterogeneous environments
Q42122006Parallel adaptive evolution cultures of Escherichia coli lead to convergent growth phenotypes with different gene expression states
Q34171913Parallel changes in gene expression after 20,000 generations of evolution in Escherichiacoli
Q35038412Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
Q28708794Parallel evolutionary dynamics of adaptive diversification in Escherichia coli
Q37557467Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
Q56431644Phenotypic and Genomic Evolution during a 20,000-Generation Experiment with the Bacterium Escherichia coli
Q36543363Population genomics in natural microbial communities
Q41106561PrfA regulation offsets the cost of Listeria virulence outside the host
Q46133355Quantifying the benefit of a proteome reserve in fluctuating environments
Q35220658Rapid evolution of diminished transformability in Acinetobacter baylyi
Q24793625Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR
Q35184875Relaxed natural selection alone does not permit transposable element expansion within 4,000 generations in Escherichia coli
Q34250057Repeatability and contingency in the evolution of a key innovation in phage lambda
Q34270480Repeated, selection-driven genome reduction of accessory genes in experimental populations
Q82880698Retrotransposon sequence variation in four asexual plant species
Q42033899Risk management in biological evolution
Q34682045SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA.
Q24635911Second-order selection for evolvability in a large Escherichia coli population
Q89653532Selection-Driven Gene Inactivation in Salmonella
Q36643918Synchronous waves of failed soft sweeps in the laboratory: remarkably rampant clonal interference of alleles at a single locus
Q42630018Targeted Large-Scale Deletion of Bacterial Genomes Using CRISPR-Nickases
Q34535938Tempo and mode of genome evolution in a 50,000-generation experiment
Q34694847Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
Q28730844The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss
Q37134524The cost of gene expression underlies a fitness trade-off in yeast
Q42533037The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli
Q39979716The effects of low-impact mutations in digital organisms
Q39060561The emergence of performance trade-offs during local adaptation: insights from experimental evolution
Q34671988The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
Q34331592The evolution of a pleiotropic fitness tradeoff in Pseudomonas fluorescens.
Q33633609The evolution of reduced microbial killing
Q54430796The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli.
Q39240966The impact of insertion sequences on bacterial genome plasticity and adaptability.
Q33922714The population genetics of ecological specialization in evolving Escherichia coli populations
Q26864257The spectrum of adaptive mutations in experimental evolution
Q37029909The spread of a beneficial mutation in experimental bacterial populations: the influence of the environment and genotype on the fixation of rpoS mutations
Q59353073The utility of fitness landscapes and big data for predicting evolution
Q37434387Transcription, translation, and the evolution of specialists and generalists
Q41357789Transposable Elements Mediate Adaptive Debilitation of Flagella in Experimental Escherichia coli Populations
Q36351996What is adaptation by natural selection? Perspectives of an experimental microbiologist
Q47684142What matters in chronic Burkholderia cenocepacia infection in cystic fibrosis: Insights from comparative genomics.
Q34387997Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment

Search more.