Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements

scientific article

Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.1093/GENETICS/156.2.477
P932PMC publication ID1461276
P698PubMed publication ID11014799

P2093author name stringDominique Schneider
Richard E Lenski
Esther Duperchy
Evelyne Coursange
Michel Blot
Schneider D
Lenski RE
Coursange E
Blot M
Duperchy E
P2860cites workDNA sequencing with chain-terminating inhibitorsQ22066207
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
Proposed uniform nomenclature for the proteins and protein domains of the bacterial phosphoenolpyruvate: sugar phosphotransferase systemQ24682134
The complete genome sequence of Escherichia coli K-12Q27860542
Multiple hok genes on the chromosome of Escherichia coliQ28199067
Dynamics of adaptation and diversification: a 10,000-generation experiment with bacterial populationsQ28245607
Cloning of the two pyruvate kinase isoenzyme structural genes from Escherichia coli: the relative roles of these enzymes in pyruvate biosynthesisQ28492794
Insertion sequencesQ29617579
Identification and characterization of two quiescent porin genes, nmpC and ompN, in Escherichia coli BE.Q33732525
A natural large chromosomal inversion in Lactococcus lactis is mediated by homologous recombination between two insertion sequences.Q33736962
Penicillin binding protein 2 is dispensable in Escherichia coli when ppGpp synthesis is inducedQ33937646
Effects of chromosomal inversion on cell fitness in Escherichia coli K-12.Q33954376
Long-term experimental evolution in Escherichia coli. IV. Targets of selection and the specificity of adaptationQ33967274
NAD-dependent DNA-binding activity of the bifunctional NadR regulator of Salmonella typhimuriumQ33991057
Regulation of NAD metabolism in Salmonella typhimurium: molecular sequence analysis of the bifunctional nadR regulator and the nadA-pnuC operonQ34222351
The bifunctional NadR regulator of Salmonella typhimurium: location of regions involved with DNA binding, nucleotide transport and intramolecular communicationQ34357783
Nucleotide sequence of the rodA gene, responsible for the rod shape of Escherichia coli: rodA and the pbpA gene, encoding penicillin-binding protein 2, constitute the rodA operonQ34497084
Frur mediates catabolite activation of pyruvate kinase (pykF) gene expression in Escherichia coliQ35600690
Changes in peptidoglycan composition and penicillin-binding proteins in slowly growing Escherichia coliQ36272551
Transposon Tn10 provides a promoter for transcription of adjacent sequencesQ36308342
Inversions between ribosomal RNA genes of Escherichia coliQ36379937
Genomic evolution during a 10,000-generation experiment with bacteriaQ36451882
An Escherichia coli plasmid-based, mutational system in which supF mutants are selectable: insertion elements dominate the spontaneous spectraQ39100270
Spectra of spontaneous growth-dependent and adaptive mutations at ebgR.Q39494235
Division planes alternate in spherical cells of Escherichia coliQ39565918
Molecular analysis of the gat genes from Escherichia coli and of their roles in galactitol transport and metabolismQ39843581
Transposable elements and adaptation of host bacteriaQ40564752
IS1-mediated intramolecular rearrangements: formation of excised transposon circles and replicative deletionsQ40789850
The evolution of DNA sequences in Escherichia coliQ41341599
Destabilized inheritance of pSC101 and other Escherichia coli plasmids by DpiA, a novel two-component system regulatorQ47694599
Klebsiella pneumoniae genes for citrate lyase and citrate lyase ligase: localization, sequencing, and expressionQ48078845
Nucleotide sequence of the pbpA gene and characteristics of the deduced amino acid sequence of penicillin-binding protein 2 of Escherichia coli K12.Q48358098
Rearrangement of the bacterial chromosome: forbidden inversionsQ50197324
IS2, a genetic element for turn-off and turn-on of gene activity in E. coli.Q53864235
DNA sequence changes in mutations in the tonB gene on the chromosome of Escherichia coli K12: insertion elements dominate the spontaneous spectra.Q54617924
A naturally occurring large chromosomal inversion in Escherichia coli K12.Q54773484
Evolution of competitive fitness in experimental populations of E. coli: what makes one genotype a better competitor than another?Q56920138
Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coliQ58870925
Insertion of DNA activates the cryptic bgl operon in E. coli K12Q59067572
The evolutionary dynamics of repetitive DNA in eukaryotesQ59090793
Large genome rearrangements discovered by the detailed analysis of 21 Pseudomonas aeruginosa clone C isolates found in environment and disease habitatsQ59334888
Genome plasticity in Neisseria gonorrhoeaeQ64450042
IS1 is involved in deletion formation in the gal region of E. coli K12Q66900379
O0 and strong-polar mutations in the gal operon are insertionsQ72279244
IS1-mediated DNA RearrangementsQ72911669
A fine structure map of spontaneous and induced mutations in the lambda repressor gene, including insertions of IS elementsQ72923966
The NAD synthetase NadE (OutB) of Bacillus subtilis is a sigma B-dependent general stress proteinQ73627542
Physical map of the Bacillus subtilis 166 genome: evidence for the inversion of an approximately 1900 kb continuous DNA segment, the translocation of an approximately 100 kb segment and the duplication of a 5 kb segmentQ74014328
P433issue2
P407language of work or nameEnglishQ1860
P921main subjectEscherichia coliQ25419
experimental evolutionQ3592884
P304page(s)477-488
P577publication date2000-10-01
P1433published inGeneticsQ3100575
P1476titleLong-Term Experimental Evolution in <i>Escherichia coli.</i> IX. Characterization of Insertion Sequence-Mediated Mutations and Rearrangements
Long-term experimental evolution in Escherichia coli. IX. Characterization of insertion sequence-mediated mutations and rearrangements
P478volume156

Reverse relations

cites work (P2860)
Q34029005A bacterial genome in transition--an exceptional enrichment of IS elements but lack of evidence for recent transposition in the symbiont Amoebophilus asiaticus.
Q36059490A survey of bacterial insertion sequences using IScan
Q36596823Adaptation to Parasites and Costs of Parasite Resistance in Mutator and Nonmutator Bacteria
Q28647522Adaptation, Clonal Interference, and Frequency-Dependent Interactions in a Long-Term Evolution Experiment with Escherichia coli
Q47097860Adaptive laboratory evolution of Corynebacterium glutamicum towards higher growth rates on glucose minimal medium
Q42876399Analysis of genetic systems using experimental evolution and whole-genome sequencing
Q34618065Bacterial evolution through the selective loss of beneficial Genes. Trade-offs in expression involving two loci.
Q37173084Benefit of transferred mutations is better predicted by the fitness of recipients than by their ecological or genetic relatedness
Q34415662Characteristic genome rearrangements in experimental evolution of Saccharomyces cerevisiae
Q42673777Competition between transposable elements and mutator genes in bacteria
Q33248973Complete genome sequence of Shigella flexneri 5b and comparison with Shigella flexneri 2a.
Q28603871Contrasting effects of historical contingency on phenotypic and genomic trajectories during a two-step evolution experiment with bacteria
Q42920850Crucial role for insertion sequence elements in Lactobacillus helveticus evolution as revealed by interstrain genomic comparison.
Q91723038Distribution of fitness effects of mutations obtained from a simple genetic regulatory network model
Q42738443Divergence and redundancy of transport and metabolic rate-yield strategies in a single Escherichia coli population
Q38403177Dynamics and genetic diversification of Escherichia coli during experimental adaptation to an anaerobic environment
Q47877246Effects of Beneficial Mutations in pykF Gene Vary over Time and across Replicate Populations in a Long-Term Experiment with Bacteria.
Q24644443Evolution of penicillin-binding protein 2 concentration and cell shape during a long-term experiment with Escherichia coli
Q24564036Evolutionary genomics of ecological specialization
Q57174769Experimental Design, Population Dynamics, and Diversity in Microbial Experimental Evolution
Q55038107Experimental Evolution as a High-Throughput Screen for Genetic Adaptations.
Q38683209Experimental evolution and the dynamics of adaptation and genome evolution in microbial populations
Q52340379Experimental evolution of diverse Escherichia coli metabolic mutants identifies genetic loci for convergent adaptation of growth rate.
Q34464683FREQ-Seq: a rapid, cost-effective, sequencing-based method to determine allele frequencies directly from mixed populations
Q33747528Genetic Basis of Growth Adaptation of Escherichia coli after Deletion of pgi, a Major Metabolic Gene
Q34433216Genetic Evolution of the Spanish Multidrug-Resistant Salmonella enterica 4,5,12:i:- Monophasic Variant
Q43184230Genetic background affects epistatic interactions between two beneficial mutations
Q36873735Genetic basis of evolutionary adaptation by Escherichia coli to stressful cycles of freezing, thawing and growth
Q22065981Genome dynamics and diversity of Shigella species, the etiologic agents of bacillary dysentery
Q22066365Genome dynamics in a natural archaeal population
Q22122199Genome evolution and adaptation in a long-term experiment with Escherichia coli
Q60930425Genome rearrangements in Escherichia coli during de novo acquisition of resistance to a single antibiotic or two antibiotics successively
Q22065995Genome sequence of Shigella flexneri 2a: insights into pathogenicity through comparison with genomes of Escherichia coli K12 and O157
Q35145539Genome-wide detection of chromosomal rearrangements, indels, and mutations in circular chromosomes by short read sequencing
Q24816119Genome-wide localization of mobile elements: experimental, statistical and biological considerations
Q24797871Genomic comparisons among Escherichia coli strains B, K-12, and O157:H7 using IS elements as molecular markers
Q55285004High mutation rates limit evolutionary adaptation in Escherichia coli.
Q22066316Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli
Q39791409IS981-mediated adaptive evolution recovers lactate production by ldhB transcription activation in a lactate dehydrogenase-deficient strain of Lactococcus lactis
Q33521105Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coli
Q30823409Identification of mutations in laboratory-evolved microbes from next-generation sequencing data using breseq
Q37395213Inference of the impact of insertion sequence (IS) elements on bacterial genome diversification through analysis of small-size structural polymorphisms in Escherichia coli O157 genomes
Q33316381Insertion Sequences show diverse recent activities in Cyanobacteria and Archaea
Q54365525Insertion sequence-driven evolution of Escherichia coli in chemostats.
Q41992183Insertion-sequence-mediated mutations isolated during adaptation to growth and starvation in Lactococcus lactis
Q38812569Isolating Escherichia coli strains for recombinant protein production
Q34237811Large chromosomal rearrangements during a long-term evolution experiment with Escherichia coli
Q34570839Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selection
Q34431559Long-term experimental evolution in Escherichia coli. XIII. Phylogenetic history of a balanced polymorphism
Q38504593Loss of expression of cspC, a cold shock family gene, confers a gain of fitness in Escherichia coli K-12 strains
Q34011353Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.
Q35841326Microbial lifestyle and genome signatures
Q42419706OASIS: an automated program for global investigation of bacterial and archaeal insertion sequences
Q35038412Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coli
Q42118118Polymorphisms, Chromosomal Rearrangements, and Mutator Phenotype Development during Experimental Evolution of Lactobacillus rhamnosus GG.
Q39608252Precise excision of IS5 from the intergenic region between the fucPIK and the fucAO operons and mutational control of fucPIK operon expression in Escherichia coli
Q24793625Rapid identification and mapping of insertion sequences in Escherichia coli genomes using vectorette PCR
Q34394966Recursive genomewide recombination and sequencing reveals a key refinement step in the evolution of a metabolic innovation in Escherichia coli
Q21246021Reduced evolvability of Escherichia coli MDS42, an IS-less cellular chassis for molecular and synthetic biology applications
Q28755375RepPop: a database for repetitive elements in Populus trichocarpa
Q28655611SPANDx: a genomics pipeline for comparative analysis of large haploid whole genome re-sequencing datasets
Q36174078Simultaneous Presence of Insertion Sequence Excision Enhancer and Insertion Sequence IS629 Correlates with Increased Diversity and Virulence in Shiga Toxin-Producing Escherichia coli
Q53247059Sustained fitness gains and variability in fitness trajectories in the long-term evolution experiment with Escherichia coli.
Q34694847Tests of parallel molecular evolution in a long-term experiment with Escherichia coli
Q42533037The effect of mobile element IS10 on experimental regulatory evolution in Escherichia coli
Q34671988The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
Q54430796The genetic basis of parallel and divergent phenotypic responses in evolving populations of Escherichia coli.
Q42036490The host acts as a genetic bottleneck during serial infections: an insect-fungal model system
Q36351996What is adaptation by natural selection? Perspectives of an experimental microbiologist
Q39362711Zinc-Induced Transposition of Insertion Sequence Elements Contributes to Increased Adaptability of Cupriavidus metallidurans

Search more.