Bacterial genome evolution within a clonal population: from in vitro investigations to in vivo observations

scientific article published on May 2013

Bacterial genome evolution within a clonal population: from in vitro investigations to in vivo observations is …
instance of (P31):
scholarly articleQ13442814

External links are
P356DOI10.2217/FMB.13.28
P698PubMed publication ID23642119

P50authorPatrice FrançoisQ87138615
Jacques SchrenzelQ87416031
P2093author name stringMarie Beaume
Nadezda Monina
P2860cites workHypothesis: the changing relationships of Helicobacter pylori and humans: implications for health and disease.Q55033006
Chance and necessity in the evolution of a bacterial pathogenQ56920001
Diminishing Returns from Mutation Supply Rate in Asexual PopulationsQ56920120
Evolution of species interactions in a biofilm communityQ59055799
The early stage of bacterial genome-reductive evolution in the hostQ21131555
Long-Term Experimental Evolution in Escherichia coli. I. Adaptation and Divergence During 2,000 GenerationsQ22066139
Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coliQ22066316
Microbial genetics: Evolution experiments with microorganisms: the dynamics and genetic bases of adaptationQ22122024
Genome evolution and adaptation in a long-term experiment with Escherichia coliQ22122199
Lateral gene transfer and the nature of bacterial innovationQ22122396
The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progressionQ24548344
Global trends in emerging infectious diseasesQ24575990
Multiple reciprocal adaptations and rapid genetic change upon experimental coevolution of an animal host and its microbial parasiteQ24623000
Second-order selection for evolvability in a large Escherichia coli populationQ24635911
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiotaQ27334139
The Black Queen Hypothesis: evolution of dependencies through adaptive gene lossQ28730844
A timescale for evolution, population expansion, and spatial spread of an emerging clone of methicillin-resistant Staphylococcus aureusQ28752649
Next-generation DNA sequencingQ29547447
Contingency and determinism in replicated adaptive radiations of island lizardsQ29615005
Evolution of MRSA during hospital transmission and intercontinental spreadQ29615141
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patientsQ29615301
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes.Q30426714
Nasal carriage as a source of Staphylococcus aureus bacteremia. Study GroupQ31797996
Genomes of Helicobacter pylori from native Peruvians suggest admixture of ancestral and modern lineages and reveal a western type cag-pathogenicity islandQ33252023
Architecture of Burkholderia cepacia complex sigma70 gene family: evidence of alternative primary and clade-specific factors, and genomic instabilityQ33296908
Discerning the complexity of community interactions using a Drosophila model of polymicrobial infectionsQ33379091
Identification and dynamics of a beneficial mutation in a long-term evolution experiment with Escherichia coliQ33521105
Two novel point mutations in clinical Staphylococcus aureus reduce linezolid susceptibility and switch on the stringent response to promote persistent infectionQ33604815
Host imprints on bacterial genomes--rapid, divergent evolution in individual patientsQ33701690
Positive signature-tagged mutagenesis in Pseudomonas aeruginosa: tracking patho-adaptive mutations promoting airways chronic infectionQ33815381
Use of an automated multiple-locus, variable-number tandem repeat-based method for rapid and high-throughput genotyping of Staphylococcus aureus isolatesQ33885060
The population genetics of ecological specialization in evolving Escherichia coli populationsQ33922714
Mycobacterium tuberculosis persistence mutants identified by screening in isoniazid-treated miceQ33982151
Mechanisms causing rapid and parallel losses of ribose catabolism in evolving populations of Escherichia coli B.Q34011353
Adaptive evolution of Staphylococcus aureus during chronic endobronchial infection of a cystic fibrosis patientQ34017905
Mobile genetic elements of Staphylococcus aureusQ34089037
Parallel evolution in Pseudomonas aeruginosa over 39,000 generations in vivo.Q34128914
Parallel changes in gene expression after 20,000 generations of evolution in EscherichiacoliQ34171913
Experimental evolutionQ34289524
Microbial Competition: Escherichia coli Mutants That Take Over Stationary Phase CulturesQ34305902
Multiple long-term, experimentally-evolved populations of Escherichia coli acquire dependence upon citrate as an iron chelator for optimal growth on glucoseQ34386931
A clone of methicillin-resistant Staphylococcus aureus among professional football players.Q34390668
Evolution of high mutation rates in experimental populations of E. coliQ34429727
rpoS mutations and loss of general stress resistance in Escherichia coli populations as a consequence of conflict between competing stress responsesQ34434398
Optimality and evolutionary tuning of the expression level of a proteinQ34437723
Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selectionQ34503528
High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection.Q34508854
Helicobacter pylori infection and gastric atrophy: risk of adenocarcinoma and squamous-cell carcinoma of the esophagus and adenocarcinoma of the gastric cardiaQ34546045
Long-term experimental evolution in Escherichia coli. XII. DNA topology as a key target of selectionQ34570839
Stage-specific adaptation of hypermutable Pseudomonas aeruginosa isolates during chronic pulmonary infection in patients with cystic fibrosisQ34588476
Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencingQ34630593
Genetic changes that correlate with reduced susceptibility to daptomycin in Staphylococcus aureusQ34680589
Tests of parallel molecular evolution in a long-term experiment with Escherichia coliQ34694847
Helicobacter pylori genome evolution during human infectionQ34720617
Comparative genome sequencing of an isogenic pair of USA800 clinical methicillin-resistant Staphylococcus aureus isolates obtained before and after daptomycin treatment failureQ34932588
Evolutionary dynamics of bacteria in a human host environmentQ34937408
Defining the mobilomeQ34959127
Genesis, effects and fates of repeats in prokaryotic genomes.Q34977985
Genetics of antimicrobial resistance in Staphylococcus aureus.Q34984662
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infectionQ35006626
Parallel changes in global protein profiles during long-term experimental evolution in Escherichia coliQ35038412
Genome rearrangements, deletions, and amplifications in the natural population of Bartonella henselaeQ35130162
Proliferation of mutators in A cell populationQ35618973
Molecular epidemiology and dynamics of Pseudomonas aeruginosa populations in lungs of cystic fibrosis patientsQ35784162
Dynamics of insertion sequence elements during experimental evolution of bacteriaQ35811200
Staphylococcus aureus: superbug, super genome?Q35847075
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to diseaseQ35849727
"Black holes" and bacterial pathogenicity: a large genomic deletion that enhances the virulence of Shigella spp. and enteroinvasive Escherichia coliQ36013594
Small colony variants: a pathogenic form of bacteria that facilitates persistent and recurrent infectionsQ36422855
Sensitive, specific polymorphism discovery in bacteria using massively parallel sequencingQ37035282
Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemicQ37116927
Co-evolutionary aspects of human colonisation and infection by Staphylococcus aureusQ37322841
Dynamics of long-term colonization of respiratory tract by Haemophilus influenzae in cystic fibrosis patients shows a marked increase in hypermutable strainsQ37421041
Bacterial hypermutation in cystic fibrosis, not only for antibiotic resistanceQ37794342
Control of bacterial virulence by AraC-like regulators that respond to chemical signalsQ37826851
Emergence and spread of antibiotic resistance following exposure to antibioticsQ37896674
Bacteria-phage antagonistic coevolution in soilQ39765326
Diminishing returns epistasis among beneficial mutations decelerates adaptationQ39954065
A regulatory trade-off as a source of strain variation in the species Escherichia coliQ40001101
Genomic changes during chronic Helicobacter pylori infectionQ40723713
Genetic adaptation of Pseudomonas aeruginosa to the airways of cystic fibrosis patients is catalyzed by hypermutationQ41366386
Dissecting the genetic components of adaptation of Escherichia coli to the mouse gut.Q41852644
Novel mechanism of antibiotic resistance originating in vancomycin-intermediate Staphylococcus aureus.Q42112516
The origins of cooperative bacterial communitiesQ42142483
Complete nucleotide sequence and molecular characterization of the temperate staphylococcal bacteriophage phiPVL carrying Panton-Valentine leukocidin genesQ42680997
Negative epistasis between beneficial mutations in an evolving bacterial populationQ44010374
Risk and outcome of nosocomial Staphylococcus aureus bacteraemia in nasal carriers versus non-carriersQ44108639
High Rate of Macrolide Resistance inStaphylococcus aureusStrains from Patients with Cystic Fibrosis Reveals High Proportions of Hypermutable StrainsQ44195004
Rates of DNA sequence evolution in experimental populations of Escherichia coli during 20,000 generationsQ44381822
Prophages of Staphylococcus aureus Newman and their contribution to virulenceQ44603988
Dynamics of adaptive microevolution of hypermutable Pseudomonas aeruginosa during chronic pulmonary infection in patients with cystic fibrosis.Q46002328
Meta-analysis of the relationship between cagA seropositivity and gastric cancerQ47264372
High mutation frequencies among Escherichia coli and Salmonella pathogensQ48057867
Tracking the evolutionary origin of the methicillin resistance gene: cloning and sequencing of a homologue of mecA from a methicillin susceptible strain of Staphylococcus sciuriQ49128179
Parallel evolution of virulence in pathogenic Escherichia coliQ50120324
Microbial ecology and adaptation in cystic fibrosis airways.Q51173006
The effect of spatial heterogeneity and parasites on the evolution of host diversity.Q53643025
Increased frequency of genomic alterations in Staphylococcus aureus during chronic infection is in part due to phage mobilization.Q53848247
What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli?Q53915040
Chromosomal rearrangements affecting biofilm production and antibiotic resistance in a Staphylococcus epidermidis strain causing shunt-associated ventriculitis.Q54032708
Role of mutator alleles in adaptive evolution.Q54564129
Experimental tests of the roles of adaptation, chance, and history in evolution.Q54619014
P433issue5
P921main subjectbacterial evolutionQ115395667
P1104number of pages14
P304page(s)661-674
P577publication date2013-05-01
P1433published inFuture MicrobiologyQ15759961
P1476titleBacterial genome evolution within a clonal population: from in vitro investigations to in vivo observations
P478volume8

Search more.