scholarly article | Q13442814 |
P819 | ADS bibcode | 2005PNAS..102.1974S |
P356 | DOI | 10.1073/PNAS.0409522102 |
P932 | PMC publication ID | 548573 |
P698 | PubMed publication ID | 15687504 |
P5875 | ResearchGate publication ID | 8044015 |
P50 | author | Peter Uetz | Q13220218 |
Richard M. Karp | Q92612 | ||
Trey Ideker | Q16335202 | ||
Roded Sharan | Q83769950 | ||
P2093 | author name string | Scott McCuine | |
Taylor Sittler | |||
Ryan M Kelley | |||
Silpa Suthram | |||
Tanja Kuhn | |||
P2860 | cites work | Functional organization of the yeast proteome by systematic analysis of protein complexes | Q24292209 |
Cytoscape: a software environment for integrated models of biomolecular interaction networks | Q24515682 | ||
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs | Q24545170 | ||
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions | Q24548456 | ||
Similarities and differences in genome-wide expression data of six organisms | Q24800747 | ||
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae | Q27860755 | ||
A novel genetic system to detect protein-protein interactions | Q27860915 | ||
The Gene Ontology (GO) database and informatics resource | Q27860988 | ||
A comprehensive two-hybrid analysis to explore the yeast protein interactome | Q27861093 | ||
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry | Q27861116 | ||
A protein interaction map of Drosophila melanogaster | Q28131783 | ||
Mass spectrometry-based proteomics | Q28182890 | ||
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs | Q28264442 | ||
The protein-protein interaction map of Helicobacter pylori | Q28484787 | ||
Comparative assessment of large-scale data sets of protein-protein interactions | Q29547451 | ||
A map of the interactome network of the metazoan C. elegans | Q29547482 | ||
A gene-coexpression network for global discovery of conserved genetic modules | Q29614451 | ||
Intra- and interspecific variation in primate gene expression patterns | Q29617853 | ||
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms | Q29619138 | ||
WormBase: a multi-species resource for nematode biology and genomics | Q34284591 | ||
Dynamic regulation of axon guidance. | Q34425373 | ||
Pathway alignment: application to the comparative analysis of glycolytic enzymes | Q34505049 | ||
Calcium, protease activation, and cytoskeleton remodeling underlie growth cone formation and neuronal regeneration | Q34665720 | ||
MIPS: analysis and annotation of proteins from whole genomes | Q34933194 | ||
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs". | Q35037874 | ||
Large-scale protein annotation through gene ontology | Q35783617 | ||
Conserved pathways within bacteria and yeast as revealed by global protein network alignment | Q36160907 | ||
Predicting protein functions from redundancies in large-scale protein interaction networks | Q36689451 | ||
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters | Q39584601 | ||
Relationships between proteasomes and RNA. | Q40416400 | ||
Phylogenetic analysis of metabolic pathways. | Q43666734 | ||
Memory retrieval impairment induced by hippocampal CA3 lesions is blocked by adrenocortical suppression | Q43802512 | ||
Gaining confidence in high-throughput protein interaction networks | Q44011845 | ||
Substrate affinity and substrate specificity of proteasomes with RNase activity | Q44399030 | ||
The FlyBase database of the Drosophila genome projects and community literature | Q52602195 | ||
P433 | issue | 6 | |
P407 | language of work or name | English | Q1860 |
P304 | page(s) | 1974-1979 | |
P577 | publication date | 2005-02-01 | |
P1433 | published in | Proceedings of the National Academy of Sciences of the United States of America | Q1146531 |
P1476 | title | Conserved patterns of protein interaction in multiple species | |
P478 | volume | 102 |
Q33766627 | 3D-interologs: an evolution database of physical protein- protein interactions across multiple genomes |
Q38505313 | A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks |
Q89823710 | A Guide to Conquer the Biological Network Era Using Graph Theory |
Q34388604 | A Network Synthesis Model for Generating Protein Interaction Network Families |
Q61801551 | A Novel Method for Identifying Essential Genes by Fusing Dynamic Protein⁻Protein Interactive Networks |
Q41904931 | A Probabilistic Model of Neutral and Selective Dynamics of Protein Network Evolution |
Q38209272 | A comparison of algorithms for the pairwise alignment of biological networks |
Q37259115 | A complex-centric view of protein network evolution |
Q33252004 | A direct comparison of protein interaction confidence assignment schemes |
Q33287615 | A domain-based approach to predict protein-protein interactions |
Q34567513 | A fast approach to global alignment of protein-protein interaction networks. |
Q58608784 | A genome-scale metabolic network alignment method within a hypergraph-based framework using a rotational tensor-vector product |
Q34324678 | A methodology for detecting the orthology signal in a PPI network at a functional complex level. |
Q42613163 | A network perspective on the evolution of metabolism by gene duplication. |
Q34390468 | A network-based approach for predicting missing pathway interactions |
Q33407906 | A new graph-based method for pairwise global network alignment |
Q34170651 | A novel framework for the comparative analysis of biological networks |
Q35051373 | A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum |
Q24645396 | A proteome-wide protein interaction map for Campylobacter jejuni |
Q39740453 | A systems level strategy for analyzing the cell death network: implication in exploring the apoptosis/autophagy connection. |
Q43109963 | A systems-level approach to mapping the telomere length maintenance gene circuitry |
Q33684964 | A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase |
Q35092854 | Accurate multiple network alignment through context-sensitive random walk |
Q46526502 | Algorithms to Detect Multiprotein Modularity Conserved during Evolution |
Q48315327 | Align human interactome with phenome to identify causative genes and networks underlying disease families. |
Q34311823 | AlignNemo: a local network alignment method to integrate homology and topology |
Q36218204 | Aligning Metabolic Pathways Exploiting Binary Relation of Reactions |
Q51291842 | Alignment and integration of complex networks by hypergraph-based spectral clustering |
Q37042684 | An Adaptive Hybrid Algorithm for Global Network Alignment |
Q53084349 | An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage. |
Q42641707 | Analysis of coevolving gene families using mutually exclusive orthologous modules |
Q28299231 | Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets |
Q37718778 | Applied graph-mining algorithms to study biomolecular interaction networks |
Q38408999 | Assessing semantic similarity measures for the characterization of human regulatory pathways |
Q28472394 | Associating genes and protein complexes with disease via network propagation |
Q43908318 | Automatic modeling of signaling pathways by network flow model |
Q42237550 | Automatic parameter learning for multiple local network alignment |
Q34882378 | Bacterial regulatory networks are extremely flexible in evolution |
Q34700554 | Bayesian hierarchical models for protein networks in single-cell mass cytometry |
Q24538650 | BioGRID: a general repository for interaction datasets |
Q33420619 | Bioinformatics analysis of mass spectrometry-based proteomics data sets |
Q45876646 | Biological Network Querying Techniques: Analysis and Comparison |
Q38517285 | Biological context networks: a mosaic view of the interactome |
Q38062889 | Biological network analysis: insights into structure and functions |
Q33434420 | Biological process linkage networks |
Q38796894 | Biomechanisms of Comorbidity: Reviewing Integrative Analyses of Multi-omics Datasets and Electronic Health Records |
Q33315463 | Biomolecular network querying: a promising approach in systems biology |
Q39274384 | Bridging topological and functional information in protein interaction networks by short loops profiling |
Q38088336 | Building a drug–target network and its applications |
Q46143407 | C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks |
Q41555776 | CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways |
Q35106134 | COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations |
Q47108145 | CUFID-query: accurate network querying through random walk based network flow estimation |
Q30483312 | CellCircuits: a database of protein network models |
Q35075437 | Characterization and prediction of protein-protein interactions within and between complexes |
Q34438940 | Cluster-based assessment of protein-protein interaction confidence |
Q33256165 | Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions |
Q41958807 | ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa |
Q36570663 | Combined analysis reveals a core set of cycling genes |
Q30993330 | Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction |
Q37090244 | Combining multiple positive training sets to generate confidence scores for protein-protein interactions |
Q33826919 | Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception |
Q42123804 | Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes |
Q35121772 | Comparison of protein interaction networks reveals species conservation and divergence |
Q52700423 | Comparison of the interactomic networks of different species in terms of accessibility |
Q36539847 | Complex networks and simple models in biology. |
Q24675519 | Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae |
Q36076474 | Computational Analysis of Muscular Dystrophy Sub-types Using A Novel Integrative Scheme |
Q28681948 | Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments |
Q33531521 | Computational approaches for detecting protein complexes from protein interaction networks: a survey |
Q44593689 | Computational prediction of host-pathogen protein-protein interactions |
Q28484265 | Computational prediction of protein-protein interactions in Leishmania predicted proteomes |
Q34771449 | Connectedness of PPI network neighborhoods identifies regulatory hub proteins. |
Q35006955 | Conserved abundance and topological features in chromatin-remodeling protein interaction networks |
Q35276364 | Conserved and differential gene interactions in dynamical biological systems. |
Q42742013 | Conserved toxic responses across divergent phylogenetic lineages: a meta-analysis of the neurotoxic effects of RDX among multiple species using toxicogenomics |
Q40901852 | Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome |
Q33792628 | Context-dependent transcriptional regulations between signal transduction pathways |
Q24654784 | Cost-effective strategies for completing the interactome |
Q33428459 | Cross species analysis of microarray expression data |
Q34984226 | Cross-species analysis of biological networks by Bayesian alignment |
Q34591559 | Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria |
Q42615447 | Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes |
Q35846431 | Designer Reagents for Mass Spectrometry-Based Proteomics: Clickable Cross-Linkers for Elucidation of Protein Structures and Interactions |
Q51931172 | Detecting conserved interaction patterns in biological networks |
Q30839811 | Determinants of protein abundance and translation efficiency in S. cerevisiae |
Q37976573 | Differential network biology |
Q33343113 | Discovering functional interaction patterns in protein-protein interaction networks |
Q58700216 | Discovering large conserved functional components in global network alignment by graph matching |
Q34280594 | Diversity in GeneticIn VivoMethods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System |
Q37206317 | Domain-oriented edge-based alignment of protein interaction networks |
Q22065867 | Draft genome of the filarial nematode parasite Brugia malayi |
Q36459650 | Drosophila protein interaction map (DPiM): a paradigm for metazoan protein complex interactions |
Q35087053 | EDDY: a novel statistical gene set test method to detect differential genetic dependencies |
Q36170281 | Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model |
Q30974481 | Effective identification of conserved pathways in biological networks using hidden Markov models |
Q41721360 | Energetic modeling and single-molecule verification of dynamic regulation on receptor complexes by actin corrals and lipid raft domains |
Q34099722 | Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores |
Q28730461 | Evolution of biological interaction networks: from models to real data |
Q37620156 | Evolution of biomolecular networks: lessons from metabolic and protein interactions |
Q36293883 | Evolution of protein-protein interaction networks in yeast. |
Q34266062 | Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human |
Q35629802 | Evolutionary conservation of domain-domain interactions |
Q28691691 | Experimental evolution of protein–protein interaction networks |
Q35700567 | Fair evaluation of global network aligners |
Q43138940 | Finding common protein interaction patterns across organisms. |
Q35246463 | Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast |
Q39267014 | First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill |
Q30413339 | From QSAR models of drugs to complex networks: state-of-art review and introduction of new Markov-spectral moments indices |
Q58730903 | From homogeneous to heterogeneous network alignment via colored graphlets |
Q38008992 | From protein interaction networks to novel therapeutic strategies |
Q30485164 | From protein interactions to functional annotation: graph alignment in Herpes. |
Q36069217 | From protein networks to biological systems |
Q91742198 | Functional Proteomics of Nuclear Proteins in Tetrahymena thermophila: A Review |
Q55455033 | Functional annotation of hypothetical proteins from the Exiguobacterium antarcticum strain B7 reveals proteins involved in adaptation to extreme environments, including high arsenic resistance. |
Q37685112 | Functional genomics and networks: new approaches in the extraction of complex gene modules |
Q26778520 | Functional genomics of human brain development and implications for autism spectrum disorders |
Q41814236 | Functionally guided alignment of protein interaction networks for module detection |
Q31032131 | Fuse: multiple network alignment via data fusion |
Q35646712 | Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes |
Q34915863 | Gene ontology function prediction in mollicutes using protein-protein association networks |
Q25255039 | Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality |
Q43046092 | Genetic interactions: the missing links for a better understanding of cancer susceptibility, progression and treatment. |
Q89665003 | Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs |
Q36845103 | Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns |
Q38063430 | Global Alignment of Protein–Protein Interaction Networks |
Q30487834 | Global alignment of protein-protein interaction networks by graph matching methods |
Q41866271 | Global analysis of phosphorylation networks in humans |
Q30379762 | Global multiple protein-protein interaction network alignment by combining pairwise network alignments. |
Q36432222 | Global network alignment using multiscale spectral signatures |
Q24672981 | Global topological features of cancer proteins in the human interactome |
Q35012998 | Graemlin: general and robust alignment of multiple large interaction networks |
Q34484767 | GraphAlignment: Bayesian pairwise alignment of biological networks. |
Q34564378 | GraphCrunch 2: Software tool for network modeling, alignment and clustering |
Q31154578 | GraphFind: enhancing graph searching by low support data mining techniques |
Q27932016 | Hierarchical modularity and the evolution of genetic interactomes across species. |
Q35198634 | How and when should interactome-derived clusters be used to predict functional modules and protein function? |
Q42848293 | HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks |
Q48417069 | Identification of conserved protein complexes based on a model of protein network evolution |
Q33758101 | Identification of protein complexes from co-immunoprecipitation data |
Q47245987 | Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks |
Q51353412 | Identifying Protein Complexes From Interactome Based on Essential Proteins and Local Fitness Method |
Q43961450 | Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model |
Q30862028 | Identifying hubs in protein interaction networks |
Q42064841 | Improving the prediction of yeast protein function using weighted protein-protein interactions |
Q24633667 | Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome |
Q36183157 | In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks |
Q40064969 | In silico pathway analysis: the final frontier towards completely rational drug design |
Q33383213 | Inferring pathway activity toward precise disease classification |
Q90478903 | Integrating molecular networks with genetic variant interpretation for precision medicine |
Q33357004 | Integrating protein-protein interactions and text mining for protein function prediction |
Q28681323 | Integration of biological networks and gene expression data using Cytoscape |
Q26824897 | Integrative approaches for finding modular structure in biological networks |
Q43467712 | Integrative network alignment reveals large regions of global network similarity in yeast and human |
Q36069223 | Interactome modeling |
Q36244121 | Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues |
Q33370422 | Interspecies data mining to predict novel ING-protein interactions in human |
Q37206322 | IsoRankN: spectral methods for global alignment of multiple protein networks |
Q40750107 | Large scale analysis of signal reachability |
Q28480519 | Large-Scale Elucidation of Drug Response Pathways in Humans |
Q92237136 | LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules |
Q28704307 | Leveraging models of cell regulation and GWAS data in integrative network-based association studies |
Q37196237 | Literature-curated protein interaction datasets. |
Q37306822 | Local versus global biological network alignment |
Q46867507 | MAGNA: Maximizing Accuracy in Global Network Alignment |
Q36924581 | MIMO: an efficient tool for molecular interaction maps overlap |
Q33522314 | MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement |
Q33799118 | Measuring the evolutionary rewiring of biological networks |
Q25257113 | Metabolic pathways variability and sequence/networks comparisons |
Q35147602 | Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms. |
Q36443509 | Modeling cellular machinery through biological network comparison |
Q34635968 | Modular analysis of the probabilistic genetic interaction network |
Q33267898 | Modularity and dynamics of cellular networks |
Q34530682 | Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum |
Q39429335 | ModuleAlign: module-based global alignment of protein-protein interaction networks |
Q80186518 | Multiple knockout analysis of genetic robustness in the yeast metabolic network |
Q51721468 | Multiplexed Isobaric Tagging Protocols for Quantitative Mass Spectrometry Approaches to Auditory Research |
Q33622391 | Multiplexed isobaric tagging protocols for quantitative mass spectrometry approaches to auditory research |
Q35965216 | Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction |
Q97423625 | NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets |
Q38489945 | NETAL: a new graph-based method for global alignment of protein-protein interaction networks. |
Q21144910 | NOL11, implicated in the pathogenesis of North American Indian childhood cirrhosis, is required for pre-rRNA transcription and processing |
Q28473708 | Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs) |
Q36327529 | Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks |
Q41788133 | NetAligner--a network alignment server to compare complexes, pathways and whole interactomes. |
Q41403742 | NetGrep: fast network schema searches in interactomes |
Q29616384 | Network-based classification of breast cancer metastasis |
Q28472755 | Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets |
Q51897368 | NetworkBLAST: comparative analysis of protein networks |
Q38417066 | New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence |
Q36615840 | New strategy for drug discovery by large-scale association analysis of molecular networks of different species |
Q30438177 | Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule |
Q64058614 | On the Origin of Biomolecular Networks |
Q36922346 | OntoSlug: a dynamic visual front-end program for ontologies. |
Q28680781 | Optimization criteria and biological process enrichment in homologous multiprotein modules |
Q37236870 | Optimizing a global alignment of protein interaction networks |
Q33379070 | Organization of physical interactomes as uncovered by network schemas |
Q34468610 | PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling |
Q35916743 | PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction. |
Q36220729 | PROPER: global protein interaction network alignment through percolation matching. |
Q51944579 | Pairwise alignment of protein interaction networks |
Q37283269 | Panorama of ancient metazoan macromolecular complexes |
Q40829924 | PathFinder: mining signal transduction pathway segments from protein-protein interaction networks |
Q33510438 | Phylogenetic analysis of modularity in protein interaction networks |
Q33516895 | Phylogeny-guided interaction mapping in seven eukaryotes |
Q42106097 | Pin-Align: a new dynamic programming approach to align protein-protein interaction networks. |
Q35671381 | Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments |
Q37660067 | Predicting protein-protein interactions in the context of protein evolution |
Q30930272 | Prediction of cancer proteins by integrating protein interaction, domain frequency, and domain interaction data using machine learning algorithms |
Q55514116 | PrimAlign: PageRank-inspired Markovian alignment for large biological networks. |
Q55455574 | ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies. |
Q42107550 | ProSim: A Method for Prioritizing Disease Genes Based on Protein Proximity and Disease Similarity |
Q44020341 | Probabilistic Biological Network Alignment |
Q35119485 | Processes of fungal proteome evolution and gain of function: gene duplication and domain rearrangement |
Q30423600 | Protein co-evolution: how do we combine bioinformatics and experimental approaches? |
Q51906623 | Protein complex prediction using an integrative bioinformatics approach |
Q91124795 | Protein complex prediction: A survey |
Q28286322 | Protein complex-based analysis framework for high-throughput data sets |
Q37158704 | Protein interaction predictions from diverse sources |
Q33704536 | Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection |
Q33678711 | Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods |
Q38272993 | Protein-protein interaction networks (PPI) and complex diseases. |
Q34450771 | Protein-protein interaction predictions using text mining methods |
Q30002405 | Protein-protein interactions: analysis and prediction |
Q38839094 | Protein-protein interactions: detection, reliability assessment and applications |
Q37824310 | Protein‐protein interactions: Making sense of networks via graph‐theoretic modeling |
Q33239513 | QPath: a method for querying pathways in a protein-protein interaction network |
Q35467366 | Querying pathways in protein interaction networks based on hidden Markov models |
Q34989529 | Reconstructing genome-wide protein-protein interaction networks using multiple strategies with homologous mapping. |
Q34569325 | Reconstruction of phyletic trees by global alignment of multiple metabolic networks |
Q24607576 | RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans |
Q26748815 | Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders |
Q44958592 | SAGA: a subgraph matching tool for biological graphs |
Q36329519 | SEQUOIA: significance enhanced network querying through context-sensitive random walk and minimization of network conductance |
Q42139072 | SMETANA: Accurate and Scalable Algorithm for Probabilistic Alignment of Large-Scale Biological Networks |
Q33785547 | SPICi: a fast clustering algorithm for large biological networks |
Q42687580 | SPINAL: scalable protein interaction network alignment |
Q34247846 | Scalable global alignment for multiple biological networks |
Q35880992 | Scope and limitations of yeast as a model organism for studying human tissue-specific pathways |
Q38168348 | Searching for repetitions in biological networks: methods, resources and tools. |
Q36051128 | Seed selection strategy in global network alignment without destroying the entire structures of functional modules |
Q41060088 | Sequence specificity between interacting and non-interacting homologs identifies interface residues--a homodimer and monomer use case |
Q35018008 | Simple topological features reflect dynamics and modularity in protein interaction networks |
Q33936105 | Small sets of interacting proteins suggest functional linkage mechanisms via Bayesian analogical reasoning |
Q38177646 | Spatiotemporal positioning of multipotent modules in diverse biological networks |
Q33274191 | Specificity and evolvability in eukaryotic protein interaction networks |
Q27303015 | Stability of similarity measurements for bipartite networks |
Q25255720 | Stable evolutionary signal in a yeast protein interaction network |
Q36096866 | State of the Art in Silico Tools for the Study of Signaling Pathways in Cancer |
Q30577020 | Structural Data in Synthetic Biology Approaches for Studying General Design Principles of Cellular Signaling Networks |
Q27008867 | Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review |
Q28469306 | Structure-templated predictions of novel protein interactions from sequence information |
Q35070376 | SubMAP: aligning metabolic pathways with subnetwork mappings |
Q35100906 | Supervised learning and prediction of physical interactions between human and HIV proteins |
Q30490645 | Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin |
Q48392309 | Systematic discovery of functional modules and context-specific functional annotation of human genome |
Q43252162 | Systematic identification of functional orthologs based on protein network comparison |
Q51429842 | Systematic identification of gene annotation errors in the widely used yeast mutation collections |
Q38063490 | Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era |
Q35688664 | Systems medicine: evolution of systems biology from bench to bedside |
Q40511151 | Systems-level analyses identify extensive coupling among gene expression machines |
Q38466677 | Techniques for transferring host-pathogen protein interactions knowledge to new tasks |
Q28602863 | The Biochemical Evolution of Protein Complexes |
Q44195411 | The Core Diseasome |
Q28476170 | The Modular Organization of Protein Interactions in Escherichia coli |
Q33697242 | The Plasmodium protein network diverges from those of other eukaryotes |
Q35844531 | The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria |
Q21144302 | The binary protein interactome of Treponema pallidum--the syphilis spirochete |
Q34010755 | The binary protein-protein interaction landscape of Escherichia coli |
Q42641021 | The conservation and evolutionary modularity of metabolism |
Q21136185 | The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis |
Q22241275 | The interactome: Predicting the protein-protein interactions in cells |
Q33959392 | The large-scale organization of the bacterial network of ecological co-occurrence interactions. |
Q30490889 | The post-genomic era of biological network alignment |
Q35787288 | Tight coevolution of proliferating cell nuclear antigen (PCNA)-partner interaction networks in fungi leads to interspecies network incompatibility |
Q41592105 | Topological network alignment uncovers biological function and phylogeny |
Q37166062 | Toward accurate reconstruction of functional protein networks |
Q33605065 | Toward the dynamic interactome: it's about time |
Q37087531 | Towards a molecular characterisation of pathological pathways. |
Q37696969 | Towards genome-scale signalling network reconstructions |
Q35611673 | Transcriptional regulation of protein complexes within and across species |
Q21184172 | Ulysses - an application for the projection of molecular interactions across species. |
Q30986273 | Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks |
Q31152571 | Uncovering signal transduction networks from high-throughput data by integer linear programming |
Q37070273 | Understanding biological functions through molecular networks |
Q43992267 | Understanding distal transcriptional regulation from sequence, expression and interactome perspectives |
Q57440757 | Untangling Biological Networks Using Bioinformatics |
Q37964857 | Use of comparative genomics approaches to characterize interspecies differences in response to environmental chemicals: Challenges, opportunities, and research needs |
Q33509892 | VANLO--interactive visual exploration of aligned biological networks |
Q35550142 | Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks |
Search more.