Conserved patterns of protein interaction in multiple species

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Conserved patterns of protein interaction in multiple species is …
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scholarly articleQ13442814

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P819ADS bibcode2005PNAS..102.1974S
P356DOI10.1073/PNAS.0409522102
P932PMC publication ID548573
P698PubMed publication ID15687504
P5875ResearchGate publication ID8044015

P50authorPeter UetzQ13220218
Richard M. KarpQ92612
Trey IdekerQ16335202
Roded SharanQ83769950
P2093author name stringScott McCuine
Taylor Sittler
Ryan M Kelley
Silpa Suthram
Tanja Kuhn
P2860cites workFunctional organization of the yeast proteome by systematic analysis of protein complexesQ24292209
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
Gapped BLAST and PSI-BLAST: a new generation of protein database search programsQ24545170
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactionsQ24548456
Similarities and differences in genome-wide expression data of six organismsQ24800747
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiaeQ27860755
A novel genetic system to detect protein-protein interactionsQ27860915
The Gene Ontology (GO) database and informatics resourceQ27860988
A comprehensive two-hybrid analysis to explore the yeast protein interactomeQ27861093
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryQ27861116
A protein interaction map of Drosophila melanogasterQ28131783
Mass spectrometry-based proteomicsQ28182890
Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogsQ28264442
The protein-protein interaction map of Helicobacter pyloriQ28484787
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
A map of the interactome network of the metazoan C. elegansQ29547482
A gene-coexpression network for global discovery of conserved genetic modulesQ29614451
Intra- and interspecific variation in primate gene expression patternsQ29617853
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organismsQ29619138
WormBase: a multi-species resource for nematode biology and genomicsQ34284591
Dynamic regulation of axon guidance.Q34425373
Pathway alignment: application to the comparative analysis of glycolytic enzymesQ34505049
Calcium, protease activation, and cytoskeleton remodeling underlie growth cone formation and neuronal regenerationQ34665720
MIPS: analysis and annotation of proteins from whole genomesQ34933194
Identification of potential interaction networks using sequence-based searches for conserved protein-protein interactions or "interologs".Q35037874
Large-scale protein annotation through gene ontologyQ35783617
Conserved pathways within bacteria and yeast as revealed by global protein network alignmentQ36160907
Predicting protein functions from redundancies in large-scale protein interaction networksQ36689451
A heuristic graph comparison algorithm and its application to detect functionally related enzyme clustersQ39584601
Relationships between proteasomes and RNA.Q40416400
Phylogenetic analysis of metabolic pathways.Q43666734
Memory retrieval impairment induced by hippocampal CA3 lesions is blocked by adrenocortical suppressionQ43802512
Gaining confidence in high-throughput protein interaction networksQ44011845
Substrate affinity and substrate specificity of proteasomes with RNase activityQ44399030
The FlyBase database of the Drosophila genome projects and community literatureQ52602195
P433issue6
P407language of work or nameEnglishQ1860
P304page(s)1974-1979
P577publication date2005-02-01
P1433published inProceedings of the National Academy of Sciences of the United States of AmericaQ1146531
P1476titleConserved patterns of protein interaction in multiple species
P478volume102

Reverse relations

cites work (P2860)
Q337666273D-interologs: an evolution database of physical protein- protein interactions across multiple genomes
Q38505313A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
Q89823710A Guide to Conquer the Biological Network Era Using Graph Theory
Q34388604A Network Synthesis Model for Generating Protein Interaction Network Families
Q61801551A Novel Method for Identifying Essential Genes by Fusing Dynamic Protein⁻Protein Interactive Networks
Q41904931A Probabilistic Model of Neutral and Selective Dynamics of Protein Network Evolution
Q38209272A comparison of algorithms for the pairwise alignment of biological networks
Q37259115A complex-centric view of protein network evolution
Q33252004A direct comparison of protein interaction confidence assignment schemes
Q33287615A domain-based approach to predict protein-protein interactions
Q34567513A fast approach to global alignment of protein-protein interaction networks.
Q58608784A genome-scale metabolic network alignment method within a hypergraph-based framework using a rotational tensor-vector product
Q34324678A methodology for detecting the orthology signal in a PPI network at a functional complex level.
Q42613163A network perspective on the evolution of metabolism by gene duplication.
Q34390468A network-based approach for predicting missing pathway interactions
Q33407906A new graph-based method for pairwise global network alignment
Q34170651A novel framework for the comparative analysis of biological networks
Q35051373A novel subnetwork alignment approach predicts new components of the cell cycle regulatory apparatus in Plasmodium falciparum
Q24645396A proteome-wide protein interaction map for Campylobacter jejuni
Q39740453A systems level strategy for analyzing the cell death network: implication in exploring the apoptosis/autophagy connection.
Q43109963A systems-level approach to mapping the telomere length maintenance gene circuitry
Q33684964A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase
Q35092854Accurate multiple network alignment through context-sensitive random walk
Q46526502Algorithms to Detect Multiprotein Modularity Conserved during Evolution
Q48315327Align human interactome with phenome to identify causative genes and networks underlying disease families.
Q34311823AlignNemo: a local network alignment method to integrate homology and topology
Q36218204Aligning Metabolic Pathways Exploiting Binary Relation of Reactions
Q51291842Alignment and integration of complex networks by hypergraph-based spectral clustering
Q37042684An Adaptive Hybrid Algorithm for Global Network Alignment
Q53084349An improved interolog mapping-based computational prediction of protein-protein interactions with increased network coverage.
Q42641707Analysis of coevolving gene families using mutually exclusive orthologous modules
Q28299231Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets
Q37718778Applied graph-mining algorithms to study biomolecular interaction networks
Q38408999Assessing semantic similarity measures for the characterization of human regulatory pathways
Q28472394Associating genes and protein complexes with disease via network propagation
Q43908318Automatic modeling of signaling pathways by network flow model
Q42237550Automatic parameter learning for multiple local network alignment
Q34882378Bacterial regulatory networks are extremely flexible in evolution
Q34700554Bayesian hierarchical models for protein networks in single-cell mass cytometry
Q24538650BioGRID: a general repository for interaction datasets
Q33420619Bioinformatics analysis of mass spectrometry-based proteomics data sets
Q45876646Biological Network Querying Techniques: Analysis and Comparison
Q38517285Biological context networks: a mosaic view of the interactome
Q38062889Biological network analysis: insights into structure and functions
Q33434420Biological process linkage networks
Q38796894Biomechanisms of Comorbidity: Reviewing Integrative Analyses of Multi-omics Datasets and Electronic Health Records
Q33315463Biomolecular network querying: a promising approach in systems biology
Q39274384Bridging topological and functional information in protein interaction networks by short loops profiling
Q38088336Building a drug–target network and its applications
Q46143407C-GRAAL: common-neighbors-based global GRAph ALignment of biological networks
Q41555776CAMPways: constrained alignment framework for the comparative analysis of a pair of metabolic pathways
Q35106134COCO-CL: hierarchical clustering of homology relations based on evolutionary correlations
Q47108145CUFID-query: accurate network querying through random walk based network flow estimation
Q30483312CellCircuits: a database of protein network models
Q35075437Characterization and prediction of protein-protein interactions within and between complexes
Q34438940Cluster-based assessment of protein-protein interaction confidence
Q33256165Co-evolutionary analysis of domains in interacting proteins reveals insights into domain-domain interactions mediating protein-protein interactions
Q41958807ComPlEx: conservation and divergence of co-expression networks in A. thaliana, Populus and O. sativa
Q36570663Combined analysis reveals a core set of cycling genes
Q30993330Combining modularity, conservation, and interactions of proteins significantly increases precision and coverage of protein function prediction
Q37090244Combining multiple positive training sets to generate confidence scores for protein-protein interactions
Q33826919Comparative analysis of protein interaction networks reveals that conserved pathways are susceptible to HIV-1 interception
Q42123804Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes
Q35121772Comparison of protein interaction networks reveals species conservation and divergence
Q52700423Comparison of the interactomic networks of different species in terms of accessibility
Q36539847Complex networks and simple models in biology.
Q24675519Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae
Q36076474Computational Analysis of Muscular Dystrophy Sub-types Using A Novel Integrative Scheme
Q28681948Computational and informatics strategies for identification of specific protein interaction partners in affinity purification mass spectrometry experiments
Q33531521Computational approaches for detecting protein complexes from protein interaction networks: a survey
Q44593689Computational prediction of host-pathogen protein-protein interactions
Q28484265Computational prediction of protein-protein interactions in Leishmania predicted proteomes
Q34771449Connectedness of PPI network neighborhoods identifies regulatory hub proteins.
Q35006955Conserved abundance and topological features in chromatin-remodeling protein interaction networks
Q35276364Conserved and differential gene interactions in dynamical biological systems.
Q42742013Conserved toxic responses across divergent phylogenetic lineages: a meta-analysis of the neurotoxic effects of RDX among multiple species using toxicogenomics
Q40901852Construction of a pig physical interactome using sequence homology and a comprehensive reference human interactome
Q33792628Context-dependent transcriptional regulations between signal transduction pathways
Q24654784Cost-effective strategies for completing the interactome
Q33428459Cross species analysis of microarray expression data
Q34984226Cross-species analysis of biological networks by Bayesian alignment
Q34591559Cross-species transcriptional network analysis reveals conservation and variation in response to metal stress in cyanobacteria
Q42615447Deep conservation of microRNA-target relationships and 3'UTR motifs in vertebrates, flies, and nematodes
Q35846431Designer Reagents for Mass Spectrometry-Based Proteomics: Clickable Cross-Linkers for Elucidation of Protein Structures and Interactions
Q51931172Detecting conserved interaction patterns in biological networks
Q30839811Determinants of protein abundance and translation efficiency in S. cerevisiae
Q37976573Differential network biology
Q33343113Discovering functional interaction patterns in protein-protein interaction networks
Q58700216Discovering large conserved functional components in global network alignment by graph matching
Q34280594Diversity in GeneticIn VivoMethods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System
Q37206317Domain-oriented edge-based alignment of protein interaction networks
Q22065867Draft genome of the filarial nematode parasite Brugia malayi
Q36459650Drosophila protein interaction map (DPiM): a paradigm for metazoan protein complex interactions
Q35087053EDDY: a novel statistical gene set test method to detect differential genetic dependencies
Q36170281Effective comparative analysis of protein-protein interaction networks by measuring the steady-state network flow using a Markov model
Q30974481Effective identification of conserved pathways in biological networks using hidden Markov models
Q41721360Energetic modeling and single-molecule verification of dynamic regulation on receptor complexes by actin corrals and lipid raft domains
Q34099722Enhancing the accuracy of HMM-based conserved pathway prediction using global correspondence scores
Q28730461Evolution of biological interaction networks: from models to real data
Q37620156Evolution of biomolecular networks: lessons from metabolic and protein interactions
Q36293883Evolution of protein-protein interaction networks in yeast.
Q34266062Evolutionary conservation and network structure characterize genes of phenotypic relevance for mitosis in human
Q35629802Evolutionary conservation of domain-domain interactions
Q28691691Experimental evolution of protein–protein interaction networks
Q35700567Fair evaluation of global network aligners
Q43138940Finding common protein interaction patterns across organisms.
Q35246463Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast
Q39267014First insights into the transcriptome and development of new genomic tools of a widespread circum-Mediterranean tree species, Pinus halepensis Mill
Q30413339From QSAR models of drugs to complex networks: state-of-art review and introduction of new Markov-spectral moments indices
Q58730903From homogeneous to heterogeneous network alignment via colored graphlets
Q38008992From protein interaction networks to novel therapeutic strategies
Q30485164From protein interactions to functional annotation: graph alignment in Herpes.
Q36069217From protein networks to biological systems
Q91742198Functional Proteomics of Nuclear Proteins in Tetrahymena thermophila: A Review
Q55455033Functional annotation of hypothetical proteins from the Exiguobacterium antarcticum strain B7 reveals proteins involved in adaptation to extreme environments, including high arsenic resistance.
Q37685112Functional genomics and networks: new approaches in the extraction of complex gene modules
Q26778520Functional genomics of human brain development and implications for autism spectrum disorders
Q41814236Functionally guided alignment of protein interaction networks for module detection
Q31032131Fuse: multiple network alignment via data fusion
Q35646712Gene loss rate: a probabilistic measure for the conservation of eukaryotic genes
Q34915863Gene ontology function prediction in mollicutes using protein-protein association networks
Q25255039Genetic Interaction Motif Finding by expectation maximization--a novel statistical model for inferring gene modules from synthetic lethality
Q43046092Genetic interactions: the missing links for a better understanding of cancer susceptibility, progression and treatment.
Q89665003Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs
Q36845103Global Alignment of Pairwise Protein Interaction Networks for Maximal Common Conserved Patterns
Q38063430Global Alignment of Protein–Protein Interaction Networks
Q30487834Global alignment of protein-protein interaction networks by graph matching methods
Q41866271Global analysis of phosphorylation networks in humans
Q30379762Global multiple protein-protein interaction network alignment by combining pairwise network alignments.
Q36432222Global network alignment using multiscale spectral signatures
Q24672981Global topological features of cancer proteins in the human interactome
Q35012998Graemlin: general and robust alignment of multiple large interaction networks
Q34484767GraphAlignment: Bayesian pairwise alignment of biological networks.
Q34564378GraphCrunch 2: Software tool for network modeling, alignment and clustering
Q31154578GraphFind: enhancing graph searching by low support data mining techniques
Q27932016Hierarchical modularity and the evolution of genetic interactomes across species.
Q35198634How and when should interactome-derived clusters be used to predict functional modules and protein function?
Q42848293HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks
Q48417069Identification of conserved protein complexes based on a model of protein network evolution
Q33758101Identification of protein complexes from co-immunoprecipitation data
Q47245987Identify bilayer modules via pseudo-3D clustering: applications to miRNA-gene bilayer networks
Q51353412Identifying Protein Complexes From Interactome Based on Essential Proteins and Local Fitness Method
Q43961450Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model
Q30862028Identifying hubs in protein interaction networks
Q42064841Improving the prediction of yeast protein function using weighted protein-protein interactions
Q24633667Improving the yeast two-hybrid system with permutated fusions proteins: the Varicella Zoster Virus interactome
Q36183157In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks
Q40064969In silico pathway analysis: the final frontier towards completely rational drug design
Q33383213Inferring pathway activity toward precise disease classification
Q90478903Integrating molecular networks with genetic variant interpretation for precision medicine
Q33357004Integrating protein-protein interactions and text mining for protein function prediction
Q28681323Integration of biological networks and gene expression data using Cytoscape
Q26824897Integrative approaches for finding modular structure in biological networks
Q43467712Integrative network alignment reveals large regions of global network similarity in yeast and human
Q36069223Interactome modeling
Q36244121Interactome-transcriptome analysis reveals the high centrality of genes differentially expressed in lung cancer tissues
Q33370422Interspecies data mining to predict novel ING-protein interactions in human
Q37206322IsoRankN: spectral methods for global alignment of multiple protein networks
Q40750107Large scale analysis of signal reachability
Q28480519Large-Scale Elucidation of Drug Response Pathways in Humans
Q92237136LePrimAlign: local entropy-based alignment of PPI networks to predict conserved modules
Q28704307Leveraging models of cell regulation and GWAS data in integrative network-based association studies
Q37196237Literature-curated protein interaction datasets.
Q37306822Local versus global biological network alignment
Q46867507MAGNA: Maximizing Accuracy in Global Network Alignment
Q36924581MIMO: an efficient tool for molecular interaction maps overlap
Q33522314MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement
Q33799118Measuring the evolutionary rewiring of biological networks
Q25257113Metabolic pathways variability and sequence/networks comparisons
Q35147602Mining host-pathogen protein interactions to characterize Burkholderia mallei infectivity mechanisms.
Q36443509Modeling cellular machinery through biological network comparison
Q34635968Modular analysis of the probabilistic genetic interaction network
Q33267898Modularity and dynamics of cellular networks
Q34530682Module-based subnetwork alignments reveal novel transcriptional regulators in malaria parasite Plasmodium falciparum
Q39429335ModuleAlign: module-based global alignment of protein-protein interaction networks
Q80186518Multiple knockout analysis of genetic robustness in the yeast metabolic network
Q51721468Multiplexed Isobaric Tagging Protocols for Quantitative Mass Spectrometry Approaches to Auditory Research
Q33622391Multiplexed isobaric tagging protocols for quantitative mass spectrometry approaches to auditory research
Q35965216Mycobacterium tuberculosis and Clostridium difficille interactomes: demonstration of rapid development of computational system for bacterial interactome prediction
Q97423625NAIGO: An Improved Method to Align PPI Networks Based on Gene Ontology and Graphlets
Q38489945NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
Q21144910NOL11, implicated in the pathogenesis of North American Indian childhood cirrhosis, is required for pre-rRNA transcription and processing
Q28473708Needles in the EST haystack: large-scale identification and analysis of excretory-secretory (ES) proteins in parasitic nematodes using expressed sequence tags (ESTs)
Q36327529Net2Align: An Algorithm For Pairwise Global Alignment of Biological Networks
Q41788133NetAligner--a network alignment server to compare complexes, pathways and whole interactomes.
Q41403742NetGrep: fast network schema searches in interactomes
Q29616384Network-based classification of breast cancer metastasis
Q28472755Network-based elucidation of human disease similarities reveals common functional modules enriched for pluripotent drug targets
Q51897368NetworkBLAST: comparative analysis of protein networks
Q38417066New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence
Q36615840New strategy for drug discovery by large-scale association analysis of molecular networks of different species
Q30438177Novel pathway compendium analysis elucidates mechanism of pro-angiogenic synthetic small molecule
Q64058614On the Origin of Biomolecular Networks
Q36922346OntoSlug: a dynamic visual front-end program for ontologies.
Q28680781Optimization criteria and biological process enrichment in homologous multiprotein modules
Q37236870Optimizing a global alignment of protein interaction networks
Q33379070Organization of physical interactomes as uncovered by network schemas
Q34468610PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling
Q35916743PINALOG: a novel approach to align protein interaction networks--implications for complex detection and function prediction.
Q36220729PROPER: global protein interaction network alignment through percolation matching.
Q51944579Pairwise alignment of protein interaction networks
Q37283269Panorama of ancient metazoan macromolecular complexes
Q40829924PathFinder: mining signal transduction pathway segments from protein-protein interaction networks
Q33510438Phylogenetic analysis of modularity in protein interaction networks
Q33516895Phylogeny-guided interaction mapping in seven eukaryotes
Q42106097Pin-Align: a new dynamic programming approach to align protein-protein interaction networks.
Q35671381Predicting and exploring network components involved in pathogenesis in the malaria parasite via novel subnetwork alignments
Q37660067Predicting protein-protein interactions in the context of protein evolution
Q30930272Prediction of cancer proteins by integrating protein interaction, domain frequency, and domain interaction data using machine learning algorithms
Q55514116PrimAlign: PageRank-inspired Markovian alignment for large biological networks.
Q55455574ProMotE: an efficient algorithm for counting independent motifs in uncertain network topologies.
Q42107550ProSim: A Method for Prioritizing Disease Genes Based on Protein Proximity and Disease Similarity
Q44020341Probabilistic Biological Network Alignment
Q35119485Processes of fungal proteome evolution and gain of function: gene duplication and domain rearrangement
Q30423600Protein co-evolution: how do we combine bioinformatics and experimental approaches?
Q51906623Protein complex prediction using an integrative bioinformatics approach
Q91124795Protein complex prediction: A survey
Q28286322Protein complex-based analysis framework for high-throughput data sets
Q37158704Protein interaction predictions from diverse sources
Q33704536Protein network prediction and topological analysis in Leishmania major as a tool for drug target selection
Q33678711Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods
Q38272993Protein-protein interaction networks (PPI) and complex diseases.
Q34450771Protein-protein interaction predictions using text mining methods
Q30002405Protein-protein interactions: analysis and prediction
Q38839094Protein-protein interactions: detection, reliability assessment and applications
Q37824310Protein‐protein interactions: Making sense of networks via graph‐theoretic modeling
Q33239513QPath: a method for querying pathways in a protein-protein interaction network
Q35467366Querying pathways in protein interaction networks based on hidden Markov models
Q34989529Reconstructing genome-wide protein-protein interaction networks using multiple strategies with homologous mapping.
Q34569325Reconstruction of phyletic trees by global alignment of multiple metabolic networks
Q24607576RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans
Q26748815Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders
Q44958592SAGA: a subgraph matching tool for biological graphs
Q36329519SEQUOIA: significance enhanced network querying through context-sensitive random walk and minimization of network conductance
Q42139072SMETANA: Accurate and Scalable Algorithm for Probabilistic Alignment of Large-Scale Biological Networks
Q33785547SPICi: a fast clustering algorithm for large biological networks
Q42687580SPINAL: scalable protein interaction network alignment
Q34247846Scalable global alignment for multiple biological networks
Q35880992Scope and limitations of yeast as a model organism for studying human tissue-specific pathways
Q38168348Searching for repetitions in biological networks: methods, resources and tools.
Q36051128Seed selection strategy in global network alignment without destroying the entire structures of functional modules
Q41060088Sequence specificity between interacting and non-interacting homologs identifies interface residues--a homodimer and monomer use case
Q35018008Simple topological features reflect dynamics and modularity in protein interaction networks
Q33936105Small sets of interacting proteins suggest functional linkage mechanisms via Bayesian analogical reasoning
Q38177646Spatiotemporal positioning of multipotent modules in diverse biological networks
Q33274191Specificity and evolvability in eukaryotic protein interaction networks
Q27303015Stability of similarity measurements for bipartite networks
Q25255720Stable evolutionary signal in a yeast protein interaction network
Q36096866State of the Art in Silico Tools for the Study of Signaling Pathways in Cancer
Q30577020Structural Data in Synthetic Biology Approaches for Studying General Design Principles of Cellular Signaling Networks
Q27008867Structure and dynamics of molecular networks: a novel paradigm of drug discovery: a comprehensive review
Q28469306Structure-templated predictions of novel protein interactions from sequence information
Q35070376SubMAP: aligning metabolic pathways with subnetwork mappings
Q35100906Supervised learning and prediction of physical interactions between human and HIV proteins
Q30490645Survey of local and global biological network alignment: the need to reconcile the two sides of the same coin
Q48392309Systematic discovery of functional modules and context-specific functional annotation of human genome
Q43252162Systematic identification of functional orthologs based on protein network comparison
Q51429842Systematic identification of gene annotation errors in the widely used yeast mutation collections
Q38063490Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era
Q35688664Systems medicine: evolution of systems biology from bench to bedside
Q40511151Systems-level analyses identify extensive coupling among gene expression machines
Q38466677Techniques for transferring host-pathogen protein interactions knowledge to new tasks
Q28602863The Biochemical Evolution of Protein Complexes
Q44195411The Core Diseasome
Q28476170The Modular Organization of Protein Interactions in Escherichia coli
Q33697242The Plasmodium protein network diverges from those of other eukaryotes
Q35844531The alignment of enzymatic steps reveals similar metabolic pathways and probable recruitment events in Gammaproteobacteria
Q21144302The binary protein interactome of Treponema pallidum--the syphilis spirochete
Q34010755The binary protein-protein interaction landscape of Escherichia coli
Q42641021The conservation and evolutionary modularity of metabolism
Q21136185The human-bacterial pathogen protein interaction networks of Bacillus anthracis, Francisella tularensis, and Yersinia pestis
Q22241275The interactome: Predicting the protein-protein interactions in cells
Q33959392The large-scale organization of the bacterial network of ecological co-occurrence interactions.
Q30490889The post-genomic era of biological network alignment
Q35787288Tight coevolution of proliferating cell nuclear antigen (PCNA)-partner interaction networks in fungi leads to interspecies network incompatibility
Q41592105Topological network alignment uncovers biological function and phylogeny
Q37166062Toward accurate reconstruction of functional protein networks
Q33605065Toward the dynamic interactome: it's about time
Q37087531Towards a molecular characterisation of pathological pathways.
Q37696969Towards genome-scale signalling network reconstructions
Q35611673Transcriptional regulation of protein complexes within and across species
Q21184172Ulysses - an application for the projection of molecular interactions across species.
Q30986273Uncovering packaging features of co-regulated modules based on human protein interaction and transcriptional regulatory networks
Q31152571Uncovering signal transduction networks from high-throughput data by integer linear programming
Q37070273Understanding biological functions through molecular networks
Q43992267Understanding distal transcriptional regulation from sequence, expression and interactome perspectives
Q57440757Untangling Biological Networks Using Bioinformatics
Q37964857Use of comparative genomics approaches to characterize interspecies differences in response to environmental chemicals: Challenges, opportunities, and research needs
Q33509892VANLO--interactive visual exploration of aligned biological networks
Q35550142Vavien: An Algorithm for Prioritizing Candidate Disease Genes Based on Topological Similarity of Proteins in Interaction Networks

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