A proteome-wide protein interaction map for Campylobacter jejuni

scientific article

A proteome-wide protein interaction map for Campylobacter jejuni is …
instance of (P31):
scholarly articleQ13442814

External links are
P6179Dimensions Publication ID1023239963
P356DOI10.1186/GB-2007-8-7-R130
P3181OpenCitations bibliographic resource ID959072
P932PMC publication ID2323224
P698PubMed publication ID17615063
P5875ResearchGate publication ID6222984

P50authorTrey IdekerQ16335202
Farshad FotouhiQ5436402
Russell L. FinleyQ50421055
Jason E ChanQ58234516
P2093author name stringBernie A Mangiola
Guozhen Liu
Huamei Zhang
Jingkai Yu
Jodi R Parrish
Julie A Hines
Phillip Andrews
Svetlana Pacifico
Victor J DiRita
P2860cites workThe crucial role of Campylobacter jejuni genes in anti-ganglioside antibody induction in Guillain-Barré syndromeQ61455350
Exploiting genome sequence: predictions for mechanisms of Campylobacter chemotaxisQ77815581
Prediction, assessment and validation of protein interaction maps in bacteriaQ78482210
Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter speciesQ21146381
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collectionQ22122301
The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequencesQ22122402
Gene ontology: tool for the unification of biologyQ23781406
Functional organization of the yeast proteome by systematic analysis of protein complexesQ24292209
Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2Q24319816
Large-scale identification of protein-protein interaction of Escherichia coli K-12Q24546090
The single-stranded DNA-binding protein of Escherichia coliQ24634735
Bacterial small-molecule signaling pathwaysQ24657011
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiaeQ24675519
Essential Bacillus subtilis genesQ24681292
A Drosophila protein-interaction map centered on cell-cycle regulatorsQ24791344
Prolinks: a database of protein functional linkages derived from coevolutionQ24801555
RecJ exonuclease: substrates, products and interaction with SSBQ25257492
Similar modes of polypeptide recognition by export chaperones in flagellar biosynthesis and type III secretionQ27641967
The complete genome sequence of Escherichia coli K-12Q27860542
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiaeQ27860755
A novel genetic system to detect protein-protein interactionsQ27860915
A comprehensive two-hybrid analysis to explore the yeast protein interactomeQ27861093
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryQ27861116
Proteome survey reveals modularity of the yeast cell machineryQ27929510
Toward a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteinsQ27932356
Global landscape of protein complexes in the yeast Saccharomyces cerevisiaeQ27938796
Automated segmentation and classification of high throughput yeast assay spotsQ37141904
The crucial role of Campylobacter jejuni genes in anti-ganglioside antibody induction in Guillain-Barre syndromeQ37625790
Immunoproliferative small intestinal disease associated with Campylobacter jejuniQ38449266
The iProClass integrated database for protein functional analysisQ38522104
Aminopeptidases A, B, and N and dipeptidase D are the four cysteinylglycinases of Escherichia coli K-12.Q39502641
Interaction generality, a measurement to assess the reliability of a protein-protein interactionQ39535240
FlaC, a protein of Campylobacter jejuni TGH9011 (ATCC43431) secreted through the flagellar apparatus, binds epithelial cells and influences cell invasionQ40540090
Epidemiologic and Clinical Features of Campylobacter jejuni InfectionsQ41660326
Gaining confidence in high-throughput protein interaction networksQ44011845
High-throughput cloning of Campylobacter jejuni ORfs by in vivo recombination in Escherichia coli.Q54503030
A protein interaction map of Drosophila melanogasterQ28131783
The bacterial ribosome as a target for antibioticsQ28279726
Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasetsQ28299231
The protein-protein interaction map of Helicobacter pyloriQ28484787
The FliS chaperone selectively binds the disordered flagellin C-terminal D0 domain central to polymerisationQ28490078
A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic DataQ29395063
Lethality and centrality in protein networksQ29547267
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
A map of the interactome network of the metazoan C. elegansQ29547482
Interaction network containing conserved and essential protein complexes in Escherichia coliQ29615776
A bacterial two-hybrid system based on a reconstituted signal transduction pathwayQ29617862
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organismsQ29619138
A network of protein-protein interactions in yeastQ30004209
Transposon mutagenesis of Campylobacter jejuni identifies a bipartite energy taxis system required for motilityQ30663969
GenePublisher: Automated analysis of DNA microarray dataQ30806399
Some protein interaction data do not exhibit power law statisticsQ30862468
A strategy for constructing large protein interaction maps using the yeast two-hybrid system: regulated expression arrays and two-phase matingQ31024344
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for DrosophilaQ31036327
Regulated expression of proteins in yeast using the MAL61-62 promoter and a mating scheme to increase dynamic range.Q31064942
Protein interaction mapping: a Drosophila case studyQ33211911
DIP: the database of interacting proteinsQ33609737
Assessing experimentally derived interactions in a small worldQ33716309
Conserved patterns of protein interaction in multiple speciesQ33837704
Identification and purification of a single-stranded-DNA-specific exonuclease encoded by the recJ gene of Escherichia coliQ33849909
The Protein Information Resource: an integrated public resource of functional annotation of proteinsQ33956524
Requirement for IscS in biosynthesis of all thionucleosides in Escherichia coliQ33962715
Yeast two-hybrid systems and protein interaction mapping projects for yeast and wormQ33971943
High-throughput two-hybrid analysis. The promise and the perilQ34464380
Identification of the site of phosphorylation of the chemotaxis response regulator protein, CheY.Q34514809
Split ubiquitin as a sensor of protein interactions in vivoQ35849562
In vivo requirement for RecJ, ExoVII, ExoI, and ExoX in methyl-directed mismatch repairQ36235057
Interactome: gateway into systems biologyQ36257382
Genetic analysis of the recJ gene of Escherichia coli K-12Q36295634
Yeast two-hybrid contributions to interactome mapping.Q36522388
Phosphorylation-dependent binding of a signal molecule to the flagellar switch of bacteriaQ36553581
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P433issue7
P407language of work or nameEnglishQ1860
P921main subjectCampylobacterQ131488
Campylobacter jejuniQ265488
P304page(s)R130
P577publication date2007-01-01
P1433published inGenome BiologyQ5533480
P1476titleA proteome-wide protein interaction map for Campylobacter jejuni
P478volume8

Reverse relations

cites work (P2860)
Q64236808A Genome-Scale Co-Functional Network of Genes Can Accurately Reconstruct Regulatory Circuits Controlled by Two-Component Signaling Systems
Q34450010A directed-overflow and damage-control N-glycosidase in riboflavin biosynthesis
Q34713299A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803.
Q57088355A rice kinase-protein interaction map
Q28484786A second-generation protein-protein interaction network of Helicobacter pylori
Q48059800Ab Initio Modeling Led Annotation Suggests Nucleic Acid Binding Function for Many DUFs
Q28489011An expanded protein-protein interaction network in Bacillus subtilis reveals a group of hubs: Exploration by an integrative approach
Q33980287An in vitro microfluidic approach to generating protein-interaction networks
Q34005662Analysis of Protein–Protein Interactions Using High-Throughput Yeast Two-Hybrid Screens
Q47657183Analysis of protein targets in pathogen-host interaction in infectious diseases: a case study on Plasmodium falciparum and Homo sapiens interaction network
Q93163256Assigning a role for chemosensory signal transduction in Campylobacter jejuni biofilms using a combined omics approach
Q37965084Bacterial Interactomes: From Interactions to Networks
Q29140764Bacterial Interactomes: Interacting Protein Partners Share Similar Function and Are Validated in Independent Assays More Frequently Than Previously Reported
Q36309543Bacterial protein meta-interactomes predict cross-species interactions and protein function.
Q38563463Bacterial protein networks: properties and functions
Q36454044Bacteriome.org--an integrated protein interaction database for E. coli
Q45847143Biological function through network topology: a survey of the human diseasome
Q36039455Campylobacter jejuni CsrA Regulates Metabolic and Virulence Associated Proteins and Is Necessary for Mouse Colonization
Q36094538Cell-free Determination of Binary Complexes That Comprise Extended Protein-Protein Interaction Networks of Yersinia pestis.
Q41851834Characterization of CetA and CetB, a bipartite energy taxis system in Campylobacter jejuni.
Q38194556Chemotaxis in Campylobacter jejuni
Q37090244Combining multiple positive training sets to generate confidence scores for protein-protein interactions
Q30513704Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets
Q38564156Computational analysis of protein interaction networks for infectious diseases.
Q38364115Computer applications for prediction of protein-protein interactions and rational drug design.
Q37562514Connecting viral with cellular interactomes
Q38938683Cooperation of two distinct coupling proteins creates chemosensory network connections
Q35102075Corbi: a new R package for biological network alignment and querying
Q24654784Cost-effective strategies for completing the interactome
Q51859820Development of an affinity evaluation and prediction system by using the shape complementarity characteristic between proteins
Q46015286Disruption of protein complexes.
Q34280594Diversity in GeneticIn VivoMethods for Protein-Protein Interaction Studies: from the Yeast Two-Hybrid System to the Mammalian Split-Luciferase System
Q28476723Dominating biological networks
Q33374423DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions
Q52877645E. coli network upgrade
Q21559419Evolutionarily conserved herpesviral protein interaction networks
Q40633225Feedback control of Campylobacter jejuni flagellin levels through reciprocal binding of FliW to flagellin and the global regulator CsrA.
Q42035208From evidence to inference: probing the evolution of protein interaction networks
Q27022024Functional genomics of trypanosomatids
Q33396426Functional proteomics of Arabidopsis thaliana guard cells uncovers new stomatal signaling pathways
Q34257026Generation and analysis of a mouse intestinal metatranscriptome through Illumina based RNA-sequencing
Q24600699Genome annotation and intraviral interactome for the Streptococcus pneumoniae virulent phage Dp-1
Q36480414Genome reduction promotes increase in protein functional complexity in bacteria
Q21145830Global functional atlas of Escherichia coli encompassing previously uncharacterized proteins
Q36432222Global network alignment using multiscale spectral signatures
Q36218018Graphlet-based edge clustering reveals pathogen-interacting proteins
Q46226848Graphlet-based measures are suitable for biological network comparison
Q41810943Hemerythrins in the microaerophilic bacterium Campylobacter jejuni help protect key iron-sulphur cluster enzymes from oxidative damage
Q28084721How bacteria maintain location and number of flagella?
Q42848293HubAlign: an accurate and efficient method for global alignment of protein-protein interaction networks
Q43212950Identification and characterization of the aspartate chemosensory receptor of Campylobacter jejuni
Q40154227Importance of Campylobacter jejuni FliS and FliW in Flagella Biogenesis and Flagellin Secretion
Q39568172In vivo and in silico determination of essential genes of Campylobacter jejuni.
Q35671608Insight into Bacterial Virulence Mechanisms against Host Immune Response via the Yersinia pestis-Human Protein-Protein Interaction Network
Q43467712Integrative network alignment reveals large regions of global network similarity in yeast and human
Q38010411Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays
Q52689053Iron-sulfur protein maturation in Helicobacter pylori: identifying a Nfu-type cluster carrier protein and its iron-sulfur protein targets
Q37802870Large-scale protein interactome mapping: strategies and opportunities
Q43079027MPI-LIT: a literature-curated dataset of microbial binary protein--protein interactions
Q35856479Mapping the Protein-Protein Interactome Networks Using Yeast Two-Hybrid Screens
Q41854817Metabolic adaptation and protein complexes in prokaryotes
Q24655573Michigan molecular interactions r2: from interacting proteins to pathways
Q35189933MinD-like ATPase FlhG effects location and number of bacterial flagella during C-ring assembly
Q33817768Mining high-throughput experimental data to link gene and function
Q39429335ModuleAlign: module-based global alignment of protein-protein interaction networks
Q38489945NETAL: a new graph-based method for global alignment of protein-protein interaction networks.
Q43892490Negative protein-protein interaction datasets derived from large-scale two-hybrid experiments.
Q21560992Network compression as a quality measure for protein interaction networks
Q35118812Network representations of immune system complexity
Q28710346Omics strategies for revealing Yersinia pestis virulence
Q30649415PRIMOS: An Integrated Database of Reassessed Protein–Protein Interactions Providing Web-Based Access toIn SilicoValidation of Experimentally Derived Data
Q34985977Parallel evolution of genome structure and transcriptional landscape in the Epsilonproteobacteria.
Q47977288Path lengths in protein-protein interaction networks and biological complexity.
Q35586950Polar flagellar biosynthesis and a regulator of flagellar number influence spatial parameters of cell division in Campylobacter jejuni
Q42254240Prediction and comparison of Salmonella-human and Salmonella-Arabidopsis interactomes
Q37776037Preparation and characterization of bacterial protein complexes for structural analysis
Q27337213Probing the extent of randomness in protein interaction networks
Q37125547Protein networks in disease
Q33678711Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods
Q92800108Protein-Protein Interactions in Candida albicans
Q42292544Protein-protein Interaction Networks of E. coli and S. cerevisiae are similar
Q37790174Protein-protein interaction and pathway databases, a graphical review
Q34018223Protein-protein interaction map is a key gateway into liver regeneration
Q59813277Protein-protein interactions in bacteria: a promising and challenging avenue towards the discovery of new antibiotics
Q30002405Protein-protein interactions: analysis and prediction
Q37824310Protein‐protein interactions: Making sense of networks via graph‐theoretic modeling
Q50134226Proteome data improves protein function prediction in the interactome of H. pylori.
Q28484727Proteome organization in a genome-reduced bacterium
Q27930733Proteome-wide protein interaction measurements of bacterial proteins of unknown function
Q21296824Proteomics of plant pathogenic fungi
Q42149240Quantifying noise in mass spectrometry and yeast two-hybrid protein interaction detection experiments
Q29140766Quantitative Tagless Copurification: A Method to Validate and Identify Protein-Protein Interactions
Q28608563Reactome pathway analysis to enrich biological discovery in proteomics data sets
Q28082443Recent Advances and Emerging Applications in Text and Data Mining for Biomedical Discovery
Q28077351Reconstruction and Application of Protein-Protein Interaction Network
Q57709697Reply to Robert et al.: Model criticism informs model choice and model comparison
Q21092415RsfA (YbeB) proteins are conserved ribosomal silencing factors
Q34575409Signal balancing by the CetABC and CetZ chemoreceptors controls energy taxis in Campylobacter jejuni.
Q26853004Spatial and numerical regulation of flagellar biosynthesis in polarly flagellated bacteria
Q49967370Structural plasticity of the Salmonella FliS flagellar export chaperone
Q38063490Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era
Q34123813Tailored graph ensembles as proxies or null models for real networks I: tools for quantifying structure
Q39036625The Campylobacter jejuni transcriptional regulator Cj1556 plays a role in the oxidative and aerobic stress response and is important for bacterial survival in vivo
Q38661206The Protein Interactome of Streptococcus pneumoniae and Bacterial Meta-interactomes Improve Function Predictions.
Q21144302The binary protein interactome of Treponema pallidum--the syphilis spirochete
Q46353115The cytotoxic early protein 77 of mycobacteriophage L5 interacts with MSMEG_3532, an L-serine dehydratase of Mycobacterium smegmatis
Q35205324The development of an affinity evaluation and prediction system by using protein–protein docking simulations and parameter tuning
Q36824286The interactome of Streptococcus pneumoniae and its bacteriophages show highly specific patterns of interactions among bacteria and their phages
Q38385900The power of the yeast two-hybrid system in the identification of novel drug targets: building and modulating PPP1 interactomes
Q33381886The prediction of protein-protein interaction networks in rice blast fungus
Q34484501The protein interaction network of a taxis signal transduction system in a halophilic archaeon
Q33280571The protein network of bacterial motility
Q37209104The social network of a cell: recent advances in interactome mapping
Q38059231The study of protein–protein interactions in bacteria
Q89507417Three SpoA-domain proteins interact in the creation of the flagellar type III secretion system in Helicobacter pylori
Q38125039Towards a detailed atlas of protein–protein interactions
Q37461382Update on Campylobacter jejuni vaccine development for preventing human campylobacteriosis.
Q21093638iRefIndex: a consolidated protein interaction database with provenance

Search more.