Identifying hubs in protein interaction networks

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Identifying hubs in protein interaction networks is …
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scholarly articleQ13442814

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P819ADS bibcode2009PLoSO...4.5344V
P356DOI10.1371/JOURNAL.PONE.0005344
P932PMC publication ID2670494
P698PubMed publication ID19399170
P5875ResearchGate publication ID24366208

P50authorAnimesh RayQ55209050
P2093author name stringAlpan Raval
Deboki Chakravarti
Ravishankar R Vallabhajosyula
Samina Lutfeali
P2860cites workFunctional organization of the yeast proteome by systematic analysis of protein complexesQ24292209
BioGRID: a general repository for interaction datasetsQ24538650
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridizationQ24657378
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiaeQ24675519
Emergence of Scaling in Random NetworksQ27037290
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiaeQ27860755
Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysisQ27860815
Genomic expression programs in the response of yeast cells to environmental changesQ27860823
Network biology: understanding the cell's functional organizationQ27861027
A comprehensive two-hybrid analysis to explore the yeast protein interactomeQ27861093
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometryQ27861116
The transcriptional program of sporulation in budding yeastQ27938344
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradationQ28131669
A protein interaction map of Drosophila melanogasterQ28131783
Specificity and stability in topology of protein networksQ28216450
The protein-protein interaction map of Helicobacter pyloriQ28484787
Lethality and centrality in protein networksQ29547267
Error and attack tolerance of complex networksQ29547268
A map of the interactome network of the metazoan C. elegansQ29547482
Evidence for dynamically organized modularity in the yeast protein-protein interaction networkQ29614449
MIPS: a database for genomes and protein sequencesQ29614501
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profilesQ29620701
Divergence measures based on the Shannon entropyQ30040892
Analysis of symbolic sequences using the Jensen-Shannon divergence.Q52040698
Entropy and distance of random graphs with application to structural pattern recognition.Q52267053
The Structure and Function of Complex NetworksQ55879008
The Dip Test of UnimodalityQ55894425
Growing network with local rules: preferential attachment, clustering hierarchy, and degree correlationsQ73478873
Evolution of long-range fractal correlations and 1/f noise in DNA base sequencesQ74515608
Protein interaction networks beyond artifactsQ78395681
Network clustering coefficient without degree-correlation biasesQ81028492
Tuning clustering in random networks with arbitrary degree distributions.Q30351680
Protein interaction verification and functional annotation by integrated analysis of genome-scale data.Q30696445
Why do hubs tend to be essential in protein networks?Q33245657
Stratus not altocumulus: a new view of the yeast protein interaction networkQ33258019
Characterization of protein hubs by inferring interacting motifs from protein interactionsQ33302935
Hubs with network motifs organize modularity dynamically in the protein-protein interaction network of yeastQ33306693
Conserved patterns of protein interaction in multiple speciesQ33837704
Peeling the yeast protein networkQ34380924
How to infer gene networks from expression profilesQ41827428
What properties characterize the hub proteins of the protein-protein interaction network of Saccharomyces cerevisiae?Q42625650
Still stratus not altocumulus: further evidence against the date/party hub distinctionQ42745582
Confirmation of organized modularity in the yeast interactomeQ42745586
Functional and topological characterization of protein interaction networksQ47866212
P275copyright licenseCreative Commons Attribution 4.0 InternationalQ20007257
P6216copyright statuscopyrightedQ50423863
P433issue4
P407language of work or nameEnglishQ1860
P304page(s)e5344
P577publication date2009-04-28
P1433published inPLOS OneQ564954
P1476titleIdentifying hubs in protein interaction networks
P478volume4

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cites work (P2860)
Q43283307A Comprehensive Survey of the Roles of Highly Disordered Proteins in Type 2 Diabetes.
Q28554086A Network-Based Data Integration Approach to Support Drug Repurposing and Multi-Target Therapies in Triple Negative Breast Cancer
Q40049495A Systems Vaccinology Approach Reveals Temporal Transcriptomic Changes of Immune Responses to the Yellow Fever 17D Vaccine.
Q33564313A comprehensive molecular interaction map for rheumatoid arthritis
Q92471897A network analysis revealed the essential and common downstream proteins related to inguinal hernia
Q34190287A new essential protein discovery method based on the integration of protein-protein interaction and gene expression data
Q55218502A new method for predicting essential proteins based on participation degree in protein complex and subgraph density.
Q34650524A new method for the discovery of essential proteins
Q28477617A new methodology to associate SNPs with human diseases according to their pathway related context
Q31090650A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network
Q36112067An ensemble framework for identifying essential proteins.
Q93059705Analyzing the regulation of miRNAs on protein-protein interaction network in Hodgkin lymphoma
Q34173951Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks
Q50420648Building protein-protein interaction networks for Leishmania species through protein structural information.
Q35119010CaSPIAN: a causal compressive sensing algorithm for discovering directed interactions in gene networks
Q38845311Comparative genomic analysis of novel Acinetobacter symbionts: A combined systems biology and genomics approach
Q48143410Comparative transcriptomics of hepatic differentiation of human pluripotent stem cells and adult human liver tissue.
Q36974508Complexity and Specificity of the Neutrophil Transcriptomes in Juvenile Idiopathic Arthritis
Q37428842Construction and application of a protein interaction map for white spot syndrome virus (WSSV).
Q51356483Detection of protein complexes using a protein ranking algorithm.
Q42532157Domain distribution and intrinsic disorder in hubs in the human protein-protein interaction network
Q41037061Drug Target Protein-Protein Interaction Networks: A Systematic Perspective.
Q39979587Dynamic modular architecture of protein-protein interaction networks beyond the dichotomy of 'date' and 'party' hubs
Q46928057Effective identification of essential proteins based on priori knowledge, network topology and gene expressions
Q44544071Evolutionary analyses of non-family genes in plants
Q55294338Hub Protein Controversy: Taking a Closer Look at Plant Stress Response Hubs.
Q37756001Hub promiscuity in protein-protein interaction networks
Q50882752Identification of essential proteins from weighted protein-protein interaction networks.
Q51051024Identification of inflammatory bowel disease-related proteins using a reverse k-nearest neighbor search.
Q33874148Identifying novel genes and biological processes relevant to the development of cancer therapy-induced mucositis: An informative gene network analysis
Q47096923Insights from the protein-protein interaction network analysis of Mycobacterium tuberculosis toxin-antitoxin systems
Q30420818Integrated network analysis reveals a novel role for the cell cycle in 2009 pandemic influenza virus-induced inflammation in macaque lungs
Q37385253Integrating diverse information to gain more insight into microarray analysis
Q35690140Model-based clustering reveals vitamin D dependent multi-centrality hubs in a network of vitamin-related proteins
Q46249708Modeling of the jasmonate signaling pathway in Arabidopsis thaliana with respect to pathophysiology of Alternaria blight in Brassica
Q33872104Modification of gene duplicability during the evolution of protein interaction network
Q48155911Molecular Genetic Analysis of Human Endometrial Mesenchymal Stem Cells That Survived Sublethal Heat Shock.
Q89550771Network Embedding the Protein-Protein Interaction Network for Human Essential Genes Identification
Q35193842Novel insights into the regulatory architecture of CD4+ T cells in rheumatoid arthritis
Q34161379Novel insights through the integration of structural and functional genomics data with protein networks
Q28248627Order and disorder in large multi-site docking proteins of the Gab family--implications for signalling complex formation and inhibitor design strategies
Q91071272Potential druggable proteins and chimeric vaccine construct prioritization against Brucella melitensis from species core genome data
Q47270294Prediction of essential proteins based on subcellular localization and gene expression correlation
Q42314462Protein interaction evolution from promiscuity to specificity with reduced flexibility in an increasingly complex network
Q37515557Protein interaction networks as metric spaces: a novel perspective on distribution of hubs
Q33619022Revisiting date and party hubs: novel approaches to role assignment in protein interaction networks
Q28481579Scale-free behaviour of amino acid pair interactions in folded proteins
Q51331161Structural and dynamical analysis of biological networks.
Q90259648Structure Optimization for Large Gene Networks Based on Greedy Strategy
Q42872718Systems biology analysis of the endocannabinoid system reveals a scale-free network with distinct roles for anandamide and 2-arachidonoylglycerol
Q45056698Tethering preferences of domain families co-occurring in multi-domain proteins
Q92411725The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity
Q24564171The G protein-coupled receptor heterodimer network (GPCR-HetNet) and its hub components
Q36304197The essential and downstream common proteins of amyotrophic lateral sclerosis: A protein-protein interaction network analysis.
Q50919442The indistinguishability of epitopes from protein surface is explained by the distinct binding preferences of each of the six antigen-binding loops.
Q57801657Variability of Betweenness Centrality and Its Effect on Identifying Essential Genes
Q96304077Weighted Gene Coexpression Network Analysis Reveals the Dynamic Transcriptome Regulation and Prognostic Biomarkers of Hepatocellular Carcinoma

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