A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks

scientific article published on May 1, 2011

A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks is …
instance of (P31):
scholarly articleQ13442814

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P356DOI10.1109/TCBB.2010.75
P953full work available at URLhttp://xplorestaging.ieee.org/ielx5/8857/5730188/05557849.pdf?arnumber=5557849
P698PubMed publication ID20733244

P2093author name stringJianxin Wang
Min Li
Jianer Chen
Yi Pan
P2860cites workAn automated method for finding molecular complexes in large protein interaction networksQ21284295
Markov clustering versus affinity propagation for the partitioning of protein interaction graphsQ21284364
Community structure in social and biological networksQ24534298
DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactionsQ24548456
A Membrane Coat Complex Essential for Endosome-to-Golgi Retrograde Transport in YeastQ24670484
Protein complexes and functional modules in molecular networksQ24683305
Clustering proteins from interaction networks for the prediction of cellular functionsQ24794683
Network biology: understanding the cell's functional organizationQ27861027
Proteome survey reveals modularity of the yeast cell machineryQ27929510
Identification and characterization of five new subunits of TRAPP.Q27931433
Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.Q27933038
Cleavage factor II of Saccharomyces cerevisiae contains homologues to subunits of the mammalian Cleavage/ polyadenylation specificity factor and exhibits sequence-specific, ATP-dependent interaction with precursor RNA.Q27933903
Global landscape of protein complexes in the yeast Saccharomyces cerevisiaeQ27938796
An efficient algorithm for large-scale detection of protein familiesQ28131838
Uncovering the overlapping community structure of complex networks in nature and societyQ28255377
Lethality and centrality in protein networksQ29547267
Comparative assessment of large-scale data sets of protein-protein interactionsQ29547451
From molecular to modular cell biologyQ29547493
The large-scale organization of metabolic networksQ29547498
Hierarchical organization of modularity in metabolic networksQ29618451
A "seed-refine" algorithm for detecting protein complexes from protein interaction dataQ31107476
QPath: a method for querying pathways in a protein-protein interaction networkQ33239513
Development and implementation of an algorithm for detection of protein complexes in large interaction networksQ33239865
Evaluation of clustering algorithms for protein-protein interaction networksQ33262820
Inferring topology from clustering coefficients in protein-protein interaction networksQ33265102
Semantic integration to identify overlapping functional modules in protein interaction networksQ33291610
Modifying the DPClus algorithm for identifying protein complexes based on new topological structuresQ33371821
Predicting protein complexes from PPI data: a core-attachment approachQ33405597
Conserved patterns of protein interaction in multiple speciesQ33837704
Modular organization of cellular networksQ34329388
Consistent dissection of the protein interaction network by combining global and local metricsQ36465578
Defining and identifying communities in networksQ36851731
The interactome as a tree--an attempt to visualize the protein-protein interaction network in yeastQ37537608
Modular organization of protein interaction networksQ38517471
A novel functional module detection algorithm for protein-protein interaction networksQ41904780
Complex discovery from weighted PPI networks.Q45989256
Functional topology in a network of protein interactionsQ47207928
Protein complex prediction via cost-based clusteringQ47387430
Functional and topological characterization of protein interaction networksQ47866212
A clustering algorithm based on graph connectivityQ60307349
CFinder: locating cliques and overlapping modules in biological networksQ82534265
P433issue3
P407language of work or nameEnglishQ1860
P921main subjecthierarchical clusteringQ1277447
clustering algorithmQ24953001
P304page(s)607-620
P577publication date2011-05-01
P1433published inIEEE/ACM Transactions on Computational Biology and BioinformaticsQ5970224
P1476titleA fast hierarchical clustering algorithm for functional modules discovery in protein interaction networks
A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
P478volume8

Reverse relations

cites work (P2860)
Q97530381A bioinformatics investigation into molecular mechanism of Yinzhihuang granules for treating hepatitis B by network pharmacology and molecular docking verification
Q37730839A novel algorithm for detecting protein complexes with the breadth first search
Q92480016A seed-extended algorithm for detecting protein complexes based on density and modularity with topological structure and GO annotations
Q35934515A two-layer integration framework for protein complex detection
Q33768005ABC and IFC: modules detection method for PPI network
Q46526502Algorithms to Detect Multiprotein Modularity Conserved during Evolution
Q34640696An effective method for refining predicted protein complexes based on protein activity and the mechanism of protein complex formation
Q47657183Analysis of protein targets in pathogen-host interaction in infectious diseases: a case study on Plasmodium falciparum and Homo sapiens interaction network
Q34333565Biological network motif detection and evaluation
Q49916704Characteristics and evolution of the ecosystem of software tools supporting research in molecular biology.
Q30898153Clustering PPI data by combining FA and SHC method
Q57086703Co-occurring nematodes and bacteria in submarine canyon sediments
Q40120247Combined Large-Scale Phenotyping and Transcriptomics in Maize Reveals a Robust Growth Regulatory Network
Q38429157CytoCluster: A Cytoscape Plugin for Cluster Analysis and Visualization of Biological Networks
Q35804130Detecting conserved protein complexes using a dividing-and-matching algorithm and unequally lenient criteria for network comparison
Q37538017Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles
Q89140605Detection of Protein Complexes Based on Penalized Matrix Decomposition in a Sparse Protein⁻Protein Interaction Network
Q51022987Disease gene identification by using graph kernels and Markov random fields
Q28730893Efficient and accurate greedy search methods for mining functional modules in protein interaction networks
Q39611938Essential protein discovery based on a combination of modularity and conservatism
Q36331261Functional Module Analysis for Gene Coexpression Networks with Network Integration
Q46140917Identification of Essential Proteins Based on Edge Clustering Coefficient
Q55024946Identification of crucial genes associated with esophageal squamous cell carcinoma by gene expression profile analysis.
Q37137135Identification of protein complexes from multi-relationship protein interaction networks
Q51353412Identifying Protein Complexes From Interactome Based on Essential Proteins and Local Fitness Method
Q92331616Identifying driver genes involving gene dysregulated expression, tissue-specific expression and gene-gene network
Q33737595Identifying dynamic protein complexes based on gene expression profiles and PPI networks
Q36218007Identifying functional modules in interaction networks through overlapping Markov clustering
Q33912070Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method
Q38115517Identifying protein complexes and functional modules--from static PPI networks to dynamic PPI networks
Q35102034Identifying protein complexes based on density and modularity in protein-protein interaction network
Q30655261Identifying protein complexes from heterogeneous biological data
Q35127322Improving protein function prediction using domain and protein complexes in PPI networks
Q40134218Multi-hierarchical profiling: an emerging and quantitative approach to characterizing diverse biological networks
Q47754225Neighbor Affinity-Based Core-Attachment Method to Detect Protein Complexes in Dynamic PPI Networks.
Q55380924Network Pharmacology-Based Approach to Investigate the Mechanisms of Hedyotis diffusa Willd. in the Treatment of Gastric Cancer.
Q36120863Predicting essential proteins based on subcellular localization, orthology and PPI networks
Q34567841Prediction of disease genes using tissue-specified gene-gene network
Q34567974Prediction of disease-related genes based on weighted tissue-specific networks by using DNA methylation
Q38422071Prioritization of orphan disease-causing genes using topological feature and GO similarity between proteins in interaction networks
Q34145495Protein Complexes Discovery Based on Protein-Protein Interaction Data via a Regularized Sparse Generative Network Model
Q41660913Protein Complexes Prediction Method Based on Core-Attachment Structure and Functional Annotations
Q37254749Protein complex detection based on partially shared multi-view clustering
Q39783321Temporal and spatial constraints on community assembly during microbial colonization of wood in seawater
Q28652904The relative vertex clustering value--a new criterion for the fast discovery of functional modules in protein interaction networks
Q34279008Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data
Q33839060Using Coexpression Protein Interaction Network Analysis to Identify Mechanisms of Danshensu Affecting Patients with Coronary Heart Disease
Q51295510hF‐measure: A new measurement for evaluating clusters in protein–protein interaction networks

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