IEEE/ACM Transactions on Computational Biology and Bioinformatics (journal)

published in (P1433)

Q51290612	"Pull moves" for rectangular lattice polymer models are not fully reversible.
Q90441594	"Super Gene Set" Causal Relationship Discovery from Functional Genomics Data
Q91159107	(Differential) Co-Expression Analysis of Gene Expression: A Survey of Best Practices
Q104753932	2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction, Genome Analysis, and Psychological Stress Assessment for 2019-nCoV
Q45368052	2D meets 4G: G-quadruplexes in RNA secondary structure prediction
Q44243607	2SNP: scalable phasing method for trios and unrelated individuals
Q31054613	3D genome reconstruction with ShRes3D+ and Hi-C data
Q51670602	3D shape reconstruction of loop objects in X-ray protein crystallography.
Q89551373	3gClust: Human Protein Cluster Analysis
Q51894669	A (1.5 + epsilon)-approximation algorithm for unsigned translocation distance.
Q51929490	A 1.375-approximation algorithm for sorting by transpositions.
Q47777645	A 2-Approximation Scheme for Sorting Signed Permutations by Reversals, Transpositions, Transreversals, and Block-Interchanges
Q50856633	A Basic Protein Comparative Three-Dimensional Modeling Methodological Workflow Theory and Practice.
Q47615953	A Bayesian Framework for Combining Protein and Network Topology Information for Predicting Protein-Protein Interactions
Q89497584	A Bi-Objective RNN Model to Reconstruct Gene Regulatory Network: A Modified Multi-Objective Simulated Annealing Approach
Q47874731	A Bipartite Network and Resource Transfer-based Approach to Infer LncRNA-environmental Factor Associations
Q38713601	A CPU/MIC Collaborated Parallel Framework for GROMACS on Tianhe-2 Supercomputer
Q92394004	A Cascade of 2.5D CNN and Bidirectional CLSTM Network for Mitotic Cell Detection in 4D Microscopy Image
Q39852451	A Characterization of Minimum Spanning Tree-Like Metric Spaces
Q31068684	A Class-Information-Based Sparse Component Analysis Method to Identify Differentially Expressed Genes on RNA-Seq Data.
Q31161072	A Combined PLS and Negative Binomial Regression Model for Inferring Association Networks from Next-generation Sequencing Count Data
Q28267207	A Comparative Assessment of Predictive Accuracies of Conventional and Machine Learning Scoring Functions for Protein-Ligand Binding Affinity Prediction
Q36319546	A Comparative Study for Identifying the Chromosome-Wide Spatial Clusters from High-Throughput Chromatin Conformation Capture data.
Q89559241	A Comparative Study of Network Motifs in the Integrated Transcriptional Regulation and Protein Interaction Networks of Shewanella
Q39862798	A Comparison Study for DNA Motif Modeling on Protein Binding Microarray
Q89556680	A Composite Mode Differential Gene Regulatory Architecture based on Temporal Expression Profiles
Q90441638	A Comprehensive Study on Predicting Functional Role of Metagenomes Using Machine Learning Methods
Q31032274	A Computational Approach Using Ratio Statistics for Identifying Housekeeping Genes from cDNA Microarray Data
Q93178189	A Convolutional Deep Clustering Framework for Gene Expression Time Series
Q90078782	A Convolutional Neural Network System to Discriminate Drug-Target Interactions
Q40207784	A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference
Q50776903	A Cooperative Framework for Fireworks Algorithm.
Q52612071	A Copula-Based Granger Causality Measure for the Analysis of Neural Spike Train Data.
Q91196521	A Data-driven Approach to Predict and Classify Epileptic Seizures from Brain-wide Calcium Imaging Video Data
Q89555960	A Deep Learning Approach for Targeted Contrast-Enhanced Ultrasound Based Prostate Cancer Detection
Q98200740	A Deep Learning Model for RNA-Protein Binding Preference Prediction based on Hierarchical LSTM and Attention Network
Q35142478	A Deep Learning Network Approach to ab initio Protein Secondary Structure Prediction
Q98567143	A Deep Learning-Based Method for Identification of Bacteriophage-Host Interaction
Q89802011	A Deep Segmentation Network of Multi-scale Feature Fusion based on Attention Mechanism for IVOCT Lumen Contour
Q89555381	A Distributed Classifier for MicroRNA Target Prediction with Validation Through TCGA Expression Data
Q89556684	A Distributed Feature Selection Algorithm Based on Distance Correlation with an Application to Microarrays
Q38505313	A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
Q90457488	A Fast and Furious Bayesian Network and Its Application of Identifying Colon Cancer to Liver Metastasis Gene Regulatory Networks
Q92882487	A Faster Algorithm for Computing the Kernel of Maximum Agreement Subtrees
Q30991371	A Faster cDNA Microarray Gene Expression Data Classifier for Diagnosing Diseases
Q89497732	A Feature Sampling Strategy for Analysis of High Dimensional Genomic Data
Q103812229	A Feature Weighting-Assisted Approach for Cancer Subtypes Identification from Paired Expression profiles
Q50710887	A Flexible Computational Framework Using R and Map-Reduce for Permutation Tests of Massive Genetic Analysis of Complex Traits.
Q30379026	A Fractal Dimension and Wavelet Transform Based Method for Protein Sequence Similarity Analysis.
Q41373524	A GRASP-based Heuristic for the Sorting by Length-Weighted Inversions Problem
Q91482001	A Gaussian Mixture-Model Exploiting Pathway Knowledge for Dissecting Cancer Heterogeneity
Q92338984	A Gene Rank Based Approach for Single Cell Similarity Assessment and Clustering
Q31160704	A Gene Selection Method for Microarray Data Based on Binary PSO Encoding Gene-to-Class Sensitivity Information
Q39774596	A Generalized Lattice based Probabilistic Approach for Metagenomic Clustering
Q40554205	A Genomic Analysis Pipeline and Its Application to Pediatric Cancers
Q39255167	A Global Network Alignment Method Using Discrete Particle Swarm Optimization
Q92074009	A Global and Local Enhanced Residual U-Net for Accurate Retinal Vessel Segmentation
Q90655228	A Graphic Encoding Method for Quantitative Classification of Protein Structure and Representation of Conformational Changes
Q47851976	A Grouping Particle Swarm Optimizer with Personal-Best-Position Guidance for Large Scale Optimization.
Q40360952	A Guaranteed Similarity Metric Learning Framework for Biological Sequence Comparison
Q98200715	A Heterogeneous Information Network Model for Long Non-Coding RNA Function Prediction
Q50856556	A Hierarchical Clustering Method of Selecting Kernel SNP to Unify Informative SNP and Tag SNP.
Q98200738	A Hierarchical Discriminative Sparse Representation Classifier for EEG Signal Detection
Q40554828	A High-Throughput Zebrafish Screening Method for Visual Mutants by Light-Induced Locomotor Response
Q91270027	A Hybrid Ensemble Algorithm Combining AdaBoost and Genetic Algorithm for Cancer Classification with Gene Expression Data
Q92440041	A Hybrid Supervised Approach to Human Population Identification Using Genomics Data
Q50459978	A Just-in-Time Learning based Monitoring and Classification Method for Hyper/Hypocalcemia Diagnosis.
Q91122510	A Latent Gaussian Copula Model for Mixed Data Analysis in Brain Imaging Genetics
Q39893622	A Linear Bound on the Number of States in Optimal Convex Characters for Maximum Parsimony Distance.
Q50674431	A Low Dimensional Approximation For Competence In Bacillus Subtilis.
Q89556282	A MODEL for DISTRIBUTED PROCESSING and ANALYSES of NGS DATA under MAP-REDUCE PARADIGM
Q42136338	A Machine Learning Approach for Accurate Annotation of Noncoding RNAs
Q40207772	A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum
Q51613372	A Markov-blanket-based model for gene regulatory network inference.
Q33670010	A Max-Flow-Based Approach to the Identification of Protein Complexes Using Protein Interaction and Microarray Data
Q30992740	A Maximum A Posteriori Probability and Time-Varying Approach for Inferring Gene Regulatory Networks from Time Course Gene Microarray Data
Q30396121	A Memetic Algorithm for 3-D Protein Structure Prediction Problem
Q89837345	A Memristive Circuit Implementation of Eyes State Detection in Fatigue Driving Based on Biological Long Short-term Memory Rule
Q90920962	A Method for Generating Synthetic Electronic Medical Record Text
Q90078785	A Method of Information Protection for Collaborative Deep Learning under GAN Model Attack
Q89497824	A Mixed-Norm Laplacian Regularized Low-Rank Representation Method for Tumor Samples Clustering
Q39687600	A Modeling Framework for Generation of Positional and Temporal Simulations of Transcriptional Regulation.
Q50710083	A Modified Multiple Alignment Fast Fourier Transform with Higher Efficiency.
Q48068870	A Monte Carlo EM algorithm for de novo motif discovery in biomolecular sequences
Q89556836	A Multi-Laplacian Prior and Augmented Lagrangian Approach to the Exploratory Analysis of Time-Varying Gene and Transcriptional Regulatory Networks for Gene Microarray Data
Q38440972	A Multi-Layered Screening Method to Identify Plant Regulatory Genes
Q99546504	A Multi-Scale Activity Transition Network for Data Translation in EEG Signals Decoding
Q39687595	A Multi-State Optimization Framework for Parameter Estimation in Biological Systems
Q114824582	A Multi-classification Accessment Framework for Reproducible Evaluation of Multimodal Learning in Alzheimer's Disease
Q40448847	A Multimodal Approach for Protein Remote Homology Detection.
Q40409659	A Mutation Model from First Principles of the Genetic Code
Q93125077	A Network-based Comparison between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso
Q89557758	A New Algorithm for Counting Independent Motifs in Probabilistic Networks
Q31036675	A New Approach for Feature Selection from Microarray Data Based on Mutual Information
Q90109331	A New ECG Denoising Framework Using Generative Adversarial Network
Q40557963	A New Efficient Algorithm for the All Sorting Reversals Problem with No Bad Components
Q50535256	A New Efficient Algorithm for the Frequent Gene Team Problem.
Q38437817	A New Feature Vector Based on Gene Ontology Terms for Protein-Protein Interaction Prediction
Q47978347	A New Magnetotactic Bacteria Optimization Algorithm Based on Moment Migration
Q100380656	A New Method Based on Matrix Completion and Non-Negative Matrix Factorization for Predicting Disease-Associated miRNAs
Q50856306	A New Method for Detecting Protein Complexes based on the Three Node Cliques.
Q47898223	A New Method to Predict RNA Secondary Structure Based on RNA Folding Simulation
Q38438543	A New Path Based Hybrid Measure for Gene Ontology Similarity
Q39990223	A New Scheme to Characterize and Identify Protein Ubiquitination Sites
Q38404076	A New Semantic Functional Similarity over Gene Ontology
Q35768881	A New Unsupervised Binning Approach for Metagenomic Sequences Based on N-grams and Automatic Feature Weighting
Q93031077	A New Weighted Imputed Neighborhood-regularized Tri-factorization One-class Collaborative Filtering Algorithm: Application to Target Gene Prediction of Transcription Factors
Q58592023	A Note on GRegNetSim: A Tool for the Discrete Simulation and Analysis of Genetic Regulatory Networks
Q44910486	A Note on the Fixed Parameter Tractability of the Gene-Duplication Problem
Q39778539	A Novel Adaptive Penalized Logistic Regression for Uncovering Biomarker Associated with Anti-Cancer Drug Sensitivity
Q92695086	A Novel Approach for Potential Human LncRNA-Disease Association Prediction based on Local Random Walk
Q90849806	A Novel Approach to Detecting Epistasis using Random Sampling Regularisation
Q92560158	A Novel Branch-and-Bound Algorithm for the Protein Folding Problem in the 3D HP Model
Q47576879	A Novel Cluster Head Selection Algorithm Based on Fuzzy Clustering and Particle Swarm Optimization
Q89556381	A Novel Cluster-Based Computational Method to Identify miRNA Regulatory Modules
Q62610088	A Novel Computational Approach for Global Alignment for Multiple Biological Networks
Q91707606	A Novel Drug Repositioning Approach based on Collaborative Metric Learning
Q92188101	A Novel Edge Effect Detection Method for Real-Time Cellular Analyzer Using Functional Principal Component Analysis
Q99355774	A Novel Encoding and Decoding Calibration Guiding Pathway for Pathological Image Analysis
Q93178186	A Novel Feature Selection Method for Uncertain Features: An Application to the Prediction of Pro-/Anti- Longevity Genes
Q99633591	A Novel Graph Topology based GO-Similarity Measure for Signature Detection from Multi-Omics Data and its Application to Other Problems
Q30381187	A Novel Method Using Abstract Convex Underestimation in Ab-Initio Protein Structure Prediction for Guiding Search in Conformational Feature Space.
Q99206629	A Novel Method for Constructing Classification Models by Combining Different Biomarker Patterns
Q89555172	A Novel Method for LncRNA-Disease Association Prediction Based on an lncRNA-Disease Association Network
Q36050612	A Novel Method to Detect Functional microRNA Regulatory Modules by Bicliques Merging
Q92437939	A Novel Negative-Transfer-Resistant Fuzzy Clustering Model with a Shared Cross-Domain Transfer Latent Space and its Application to Brain CT Image Segmentation
Q35869885	A Novel Scoring Based Distributed Protein Docking Application to Improve Enrichment
Q40311962	A Novel Synthesizing Genetic Logic Circuit: Frequency Multiplier
Q35926266	A Novel Teaching-Learning-Based Optimization for Improved Mutagenic Primer Design in Mismatch PCR-RFLP SNP Genotyping
Q40554857	A Novel Wavelet-Based Approach for Predicting Nucleosome Positions Using DNA Structural Information
Q93172250	A Novel Way of Comparing Protein 3D Structure Using Graph Partitioning Approach
Q40553622	A Parameter Estimation Method for Biological Systems modelled by ODE/DDE Models Using Spline Approximation and Differential Evolution Algorithm.
Q89560174	A Parametric Targetability Evaluation Approach for Vitiligo Proteome Extracted through Integration of Gene Ontologies and Protein Interaction Topologies
Q46671682	A Partial Least Squares Based Procedure for Upstream Sequence Classification in Prokaryotes
Q89556389	A Probabilistic Framework for Molecular Network Structure Inference by Means of Mechanistic Modeling
Q40514153	A Probabilistic Method for Estimating the Sharing of Identity by Descent for Populations with Migration
Q90032997	A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network Models
Q50856461	A Property-Driven Methodology for Formal Analysis of Synthetic Biology Systems.
Q91196508	A Reaction-Based Model of the State Space of Chemical Reaction Systems Enables Efficient Simulations
Q39862793	A Real-Time de novo DNA Sequencing Assembly Platform Based on an FPGA Implementation
Q35869876	A Resampling Based Clustering Algorithm for Replicated Gene Expression Data
Q39990218	A Resolution of the Static Formulation Question for the Problem of Computing the History Bound
Q95822389	A Review on Methods for Detecting SNP Interactions in High-Dimensional Genomic Data
Q102205245	A Robust Algorithm Based on Link Label Propagation for Identifying Functional Modules from Protein-protein Interaction Networks
Q50999097	A SAT-based algorithm for finding attractors in synchronous Boolean networks.
Q98200727	A Scalable Embedding based Neural Network Method for Discovering Knowledge from Biomedical Literature
Q30379008	A Segmentation-Based Method to Extract Structural and Evolutionary Features for Protein Fold Recognition.
Q36397264	A Self-Training Subspace Clustering Algorithm under Low-Rank Representation for Cancer Classification on Gene Expression Data
Q30382433	A Sequence-Based Dynamic Ensemble Learning System for Protein Ligand-Binding Site Prediction.
Q30992607	A Simple but Powerful Heuristic Method for Accelerating k-Means Clustering of Large-Scale Data in Life Science
Q89559236	A Simplified Description of Child Tables for Sequence Similarity Search
Q89559874	A Slice-based 13C-detected NMR Spin System Forming and Resonance Assignment Method
Q47837025	A Sparse Learning Framework for Joint Effect Analysis of Copy Number Variants
Q89498093	A Sparse Regression Method for Group-Wise Feature Selection with False Discovery Rate Control
Q30400912	A Spatial-Temporal Method to Detect Global Influenza Epidemics Using Heterogeneous Data Collected from the Internet
Q38686135	A Study of Cell-free DNA Fragmentation Pattern and Its Application in DNA Sample Type Classification
Q90441577	A Supervised Ensemble Approach for Sensitive microRNA Target Prediction
Q30697469	A Survey and Comparative Study of Statistical Tests for Identifying Differential Expression from Microarray Data
Q39642351	A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing
Q57056814	A Theoretical Analysis of the Prodrug Delivery System for Treating Antibiotic-Resistant Bacteria
Q40553072	A Topology Potential-Based Method for Identifying Essential Proteins from PPI Networks
Q94478617	A Transfer Learning Based Super-Resolution Microscopy for Biopsy Slice Images: The Joint Methods Perspective
Q41598380	A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM.
Q88329409	A Two-Stage Biomedical Event Trigger Detection Method Integrating Feature Selection and Word Embeddings
Q89557150	A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data
Q91770783	A Unified Smart Chinese Medicine Framework for Healthcare and Medical Services
Q40059434	A Visual Interface for Querying Heterogeneous Phylogenetic Databases
Q38502359	A biologically inspired measure for coexpression analysis
Q34122429	A biologically inspired validity measure for comparison of clustering methods over metabolic data sets.
Q31111289	A blocking strategy to improve gene selection for classification of gene expression data
Q89557922	A branch point on differentiation trajectory is the bifurcating event revealed by dynamical network biomarker analysis of single-cell data
Q33696983	A cDNA microarray gene expression data classifier for clinical diagnostics based on graph theory.
Q48405312	A characterization of the set of species trees that produce anomalous ranked gene trees.
Q50626391	A closed-loop control scheme for steering steady states of glycolysis and glycogenolysis pathway.
Q43947852	A cluster refinement algorithm for motif discovery
Q43685177	A coclustering approach for mining large protein-protein interaction networks
Q51157404	A combination of feature extraction methods with an ensemble of different classifiers for protein structural class prediction problem.
Q42636804	A combinatorial perspective of the protein inference problem.
Q45343236	A comparative assessment of ranking accuracies of conventional and machine-learning-based scoring functions for protein-ligand binding affinity prediction
Q45960941	A comparative study on filtering protein secondary structure prediction.
Q41891471	A comprehensive statistical model for cell signaling
Q83906860	A computational model for predicting protein interactions based on multidomain collaboration
Q46978891	A concise necessary and sufficient condition for the existence of a galled-tree
Q36077644	A consensus tree approach for reconstructing human evolutionary history and detecting population substructure
Q48262291	A constrained evolutionary computation method for detecting controlling regions of cortical networks.
Q51654566	A continuous-time, discrete-state method for simulating the dynamics of biochemical systems.
Q92962976	A deep learning framework for gene ontology annotations with sequence - and network-based information
Q91423084	A deep learning framework for identifying essential proteins by integrating multiple types of biological information
Q35066179	A divide and conquer approach for construction of large-scale signaling networks from PPI and RNAi data using linear programming
Q39589864	A fast PC algorithm for high dimensional causal discovery with multi-core PCs.
Q44584778	A fast algorithm for computing geodesic distances in tree space
Q47321861	A fast and practical approach to genotype phasing and imputation on a pedigree with erroneous and incomplete information
Q89557247	A fast exact functional test for directional association and cancer biology applications
Q92338977	A fast linear neighborhood similarity-based network link inference method to predict microRNA-disease associations
Q43835790	A fast ranking algorithm for predicting gene functions in biomolecular networks
Q38457492	A framework for identifying genotypic information from clinical records: exploiting integrated ontology structures to transfer annotations between ICD codes and Gene Ontologies.
Q44037680	A framework for incorporating functional interrelationships into protein function prediction algorithms
Q41854102	A framework for multiple kernel support vector regression and its applications to siRNA efficacy prediction
Q38504856	A framework for semisupervised feature generation and its applications in biomedical literature mining
Q51118318	A framework for three-dimensional simulation of morphogenesis.
Q33744922	A general framework for analyzing data from two short time-series microarray experiments.
Q46473823	A generalized framework for network component analysis
Q51546094	A generalized multivariate approach to pattern discovery from replicated and incomplete genome-wide measurements.
Q53079280	A genetic optimization approach for isolating translational efficiency bias.
Q41575024	A genomic distance for assembly comparison based on compressed maximal exact matches.
Q98200744	A graph-based approach for the DNA Word Design problem
Q39038387	A graph-theoretical approach for motif discovery in protein sequences
Q46980084	A graph-theoretical approach to the selection of the minimum tiling path from a physical map.
Q39472977	A graphical model of smoking-induced global instability in lung cancer.
Q31085386	A heterogeneous network based method for identifying GBM-related genes by integrating multi-dimensional data
Q51117169	A hidden Markov model for transcriptional regulation in single cells.
Q51930811	A hill-climbing approach for automatic gridding of cDNA microarray images.
Q51511502	A hybrid EKF and switching PSO algorithm for joint state and parameter estimation of lateral flow immunoassay models.
Q51375696	A hybrid Factored Frontier algorithm for Dynamic Bayesian Networks with a biopathways application.
Q34164635	A hybrid approach to survival model building using integration of clinical and molecular information in censored data
Q51290640	A hybrid cellular automaton model of solid tumor growth and bioreductive drug transport.
Q44536430	A knowledge-based multiple-sequence alignment algorithm
Q92275430	A local outlier factor-based detection of copy number variations from NGS data
Q45961725	A mathematical model for the validation of gene selection methods.
Q30533613	A mathematical model to study the dynamics of epithelial cellular networks
Q48058184	A memory efficient method for structure-based RNA multiple alignment.
Q51468422	A metric for phylogenetic trees based on matching.
Q48214192	A metric on the space of reduced phylogenetic networks
Q47791931	A model-based tool for the analysis and design of gene regulatory network
Q89560721	A multimodal deep neural network for human breast cancer prognosis prediction by integrating multi-dimensional data
Q33530838	A multiple-filter-multiple-wrapper approach to gene selection and microarray data classification
Q45001478	A new approach to implement absorbing boundary condition in biomolecular electrostatics
Q51931020	A new distance for high level RNA secondary structure comparison.
Q51435996	A new efficient algorithm for the gene-team problem on general sequences.
Q34074663	A new efficient data structure for storage and retrieval of multiple biosequences
Q104753933	A new estimation method for the biological interaction predicting problems
Q34145502	A new measure of classifier performance for gene expression data
Q34174545	A new unsupervised feature ranking method for gene expression data based on consensus affinity.
Q92216207	A novel Cox proportional hazards model for high - dimensional genomic data in cancer prognosis
Q104514763	A novel adaptive linear neuron based on DNA strand displacement reaction network
Q47999130	A novel approach to identify the miRNA-mRNA causal regulatory modules in Cancer
Q51894668	A novel biologically and psychologically inspired fuzzy decision support system: hierarchical complementary learning.
Q43989384	A novel heuristic for local multiple alignment of interspersed DNA repeats
Q35536232	A novel knowledge-driven systems biology approach for phenotype prediction upon genetic intervention
Q47765204	A novel method to select informative SNPs and their application in genetic association studies
Q90441584	A novel scaffolding algorithm based on contig error correction and path extension
Q33793084	A partial set covering model for protein mixture identification using mass spectrometry data
Q98719576	A pipeline for integrated theory and data-driven modeling of biomedical data
Q51930672	A polynomial-time algorithm for the matching of crossing contact-map patterns.
Q33513811	A positive detecting code and its decoding algorithm for DNA library screening
Q51117162	A powerful approach for effective finding of significantly differentially expressed genes.
Q43773094	A practical algorithm for reconstructing level-1 phylogenetic networks.
Q44656092	A preprocessing procedure for haplotype inference by pure parsimony
Q38437923	A probabilistic latent semantic analysis model for coclustering the mouse brain atlas
Q38148933	A recent survey on colon cancer detection techniques
Q89765813	A refined 3-in-1 fused protein similarity measure: application in threshold-free hub detection
Q31147348	A review of machine learning and statistical approaches for detecting SNP interactions in high-dimensional genomic data
Q89560429	A robust simulator for physiologically structured population models
Q51575360	A shape descriptor for fast complementarity matching in molecular docking.
Q46162423	A short proof that phylogenetic tree reconstruction by maximum likelihood is hard
Q45813612	A simple fixed parameter tractable algorithm for computing the hybridization number of two (not necessarily binary) trees
Q30580646	A simpler and more accurate AUTO-HDS framework for clustering and visualization of biological data
Q33732538	A sparse learning machine for high-dimensional data with application to microarray gene analysis
Q84592794	A sparse regulatory network of copy-number driven gene expression reveals putative breast cancer oncogenes
Q30399422	A spectral approach to protein structure alignment
Q33513807	A statistical change point model approach for the detection of DNA copy number variations in array CGH data
Q51930818	A stochastic downhill search algorithm for estimating the local false discovery rate.
Q45962771	A study of hierarchical and flat classification of proteins.
Q33732544	A survey of spatial defects in Homo Sapiens Affymetrix GeneChips
Q51419748	A survey on filter techniques for feature selection in gene expression microarray analysis.
Q37813365	A survey on methods for modeling and analyzing integrated biological networks
Q51568217	A swarm intelligence framework for reconstructing gene networks: searching for biologically plausible architectures.
Q30424505	A tabu search approach for the NMR protein structure-based assignment problem
Q34074659	A top-r feature selection algorithm for microarray gene expression data
Q33530839	A trade-off between sample complexity and computational complexity in learning Boolean networks from time-series data
Q46034808	A transcript perspective on evolution.
Q51133219	A two-phase bio-NER system based on integrated classifiers and multiagent strategy.
Q45718383	A unified approach for reconstructing ancient gene clusters
Q46688193	A uniform projection method for motif discovery in DNA sequences
Q33744956	A weighted principal component analysis and its application to gene expression data.
Q31156097	ACID: association correction for imbalanced data in GWAS.
Q91032695	AFSBN: A Method of Artificial Fish Swarm Optimizing Bayesian Network for Epistasis Detection
Q98200745	AGTR2, one possible novel key gene for the entry of SARS-CoV-2 into human cells
Q92962957	AIEpred: an ensemble predictive model of classifier chain to identify anti-inflammatory peptides
Q98200713	AMP0: Species-Specific Prediction of Anti-microbial Peptides using Zero and Few Shot Learning
Q92936357	ANCA: Alignment-based Network Construction Algorithm
Q89556273	ANTENNA, a Multi-Rank, Multi-Layered Recommender System for Inferring Reliable Drug-Gene-Disease Associations: Repurposing Diazoxide as a Targeted Anti-Cancer Therapy
Q91878012	APT: An Automated Probe Tracker from gene expression data
Q57066537	ASAPP: Architectural Similarity-based Automated Pathway Prediction System and its Application in Host-Pathogen Interactions
Q89497409	ASSA-PBN: A Toolbox for Probabilistic Boolean Networks
Q100481910	Ab-initio Membrane Protein Amphipathic Helix Structure Prediction Using Deep Neural Networks
Q93172245	Accelerated analysis of Boolean gene regulatory networks via reconfigurable hardware
Q48262985	Accelerating Bioinformatics Applications via Emerging Parallel Computing Systems
Q90363140	Accelerating Sequence Alignments Based on FM-Index Using the Intel KNL Processor
Q50856828	Accelerating the Next Generation Long Read Mapping with the FPGA-Based System.
Q46535967	Accuracy assessment of diploid consensus sequences
Q46987421	Accuracy guarantees for phylogeny reconstruction algorithms based on balanced minimum evolution
Q45965519	Accurate cancer classification using expressions of very few genes.
Q51697180	Accurate construction of consensus genetic maps via integer linear programming.
Q48182764	Accurate reconstruction for DNA sequencing by hybridization based on a constructive heuristic
Q91423092	Accurately Detecting Protein Complexes by Graph Embedding and Combining Functions with Interactions
Q91548129	Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling
Q89501014	Active module identification from multilayer weighted gene co-expression networks: a continuous optimization approach
Q30992822	Adaptive Fuzzy Consensus Clustering Framework for Clustering Analysis of Cancer Data.
Q93004753	Adaptive Particle Filtering for Fault Detection in Partially-Observed Boolean Dynamical Systems
Q101406864	Adaptive Tracking Control for Uncertain Cancer-Tumor-Immune Systems
Q90939201	Adjacent Y-Ion Ratio Distributions and Its Application in Peptide Sequencing
Q51909312	Adjoint systems for models of cell signaling pathways and their application to parameter fitting.
Q98200748	Advanced Machine-Learning Methods for Brain-Computer Interfacing
Q111519995	Adversarial Knowledge Distillation Based Biomedical Factoid Question Answering
Q47863708	Aggregation for Computing Multi-Modal Stationary Distributions in 1-D Gene Regulatory Networks.
Q51133210	Algebraic representation of asynchronous multiple-valued networks and its dynamics.
Q39467299	Algorithmic Mapping and Characterization of the Drug-Induced Phenotypic-Response Space of Parasites Causing Schistosomiasis
Q50710865	Algorithms and Complexity Results for Genome Mapping Problems.
Q46563918	Algorithms for Pedigree Comparison
Q51901930	Algorithms for efficient near-perfect phylogenetic tree reconstruction in theory and practice.
Q46102621	Algorithms for genome-scale phylogenetics using gene tree parsimony
Q46957143	Algorithms for reticulate networks of multiple phylogenetic trees
Q50580333	Algorithms for the Majority Rule (+) Consensus Tree and the Frequency Difference Consensus Tree.
Q91770766	Algorithms for the Sequential Reprogramming of Boolean Networks
Q46526502	Algorithms to detect multiprotein modularity conserved during evolution
Q51091230	Aligning and Clustering Patterns to Reveal the Protein Functionality of Sequences.
Q91439013	Alignment-free Sequence Comparison with Multiple k Values
Q46445602	Alignments of RNA structures
Q59357233	Altering indispensable proteins in controlling directed human protein interaction network
Q93176094	Amino acid encoding methods for protein sequences: a comprehensive review and assessment
Q50856394	An Accurate de novo Algorithm for Glycan Topology Determination from Mass Spectra.
Q37042684	An Adaptive Hybrid Algorithm for Global Network Alignment
Q89557750	An Adaptive Robust Control Strategy in a Cancer Tumor-Immune System under Uncertainties
Q35768992	An Algorithm for Constructing Principal Geodesics in Phylogenetic Treespace
Q40553523	An Algorithm for Motif Discovery with Iteration on Lengths of Motifs
Q50628662	An Algorithm for Motif-Based Network Design.
Q92560155	An Analytical Review of Computational Drug Repurposing
Q50795649	An Application Specific Instruction Set Processor (ASIP) for Adaptive Filters in Neural Prosthetics.
Q47580842	An Application of Invertibility of Boolean Control Networks to the Control of the Mammalian Cell Cycle
Q90491422	An Application of the Bayesian Periodicity Test to Identify Diurnal Rhythm Genes in the Brain
Q38860768	An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra
Q91373058	An Automated Cell Tracking Approach with Multi-Bernoulli Filtering and Ant Colony Labor Division
Q47978319	An Effective Application of Bacteria Quorum Sensing and Circular Elimination in MOPSO.
Q90300347	An Effective Biclustering-based Framework for Identifying Cell Subpopulations from scRNA-seq Data
Q41509211	An Effective Computational Method Incorporating Multiple Secondary Structure Predictions in Topology Determination for Cryo-EM Images
Q101568278	An Effective Multi-Label Protein Sub-Chloroplast Localization Prediction by Skipped-grams of Evolutionary Profiles using Deep Neural Network
Q93368000	An Efficient Ensemble Learning Approach for Predicting Protein-Protein Interactions by Integrating Protein Primary Sequence and Evolutionary Information
Q50856459	An Efficient Exact Algorithm for the Motif Stem Search Problem over Large Alphabets.
Q89555610	An Efficient Mixed-Model for Screening Differentially Expressed Genes of Breast Cancer Based on LR-RF
Q98200723	An Efficient Multiresolution Clustering for Motif Discovery in Complex Networks
Q40552892	An Efficient Search Algorithm for Finding Genomic-Range Overlaps Based on the Maximum Range Length
Q50856626	An Efficient and Very Accurate Method for Calculating Steady-State Sensitivities in Metabolic Reaction Systems.
Q53785686	An Eigen-Binding Site Based Method for the Analysis of Anti-EGFR Drug Resistance in Lung Cancer Treatment.
Q114857275	An Ensemble Tf-Idf Based Approach to Protein Function Prediction via Sequence Segmentation
Q91578088	An Entropy-based method for identifying mutual exclusive driver genes in cancer
Q89557457	An Exact Algorithm for Sorting by Weighted Preserving Genome Rearrangements
Q38453742	An Extensive Empirical Comparison of Probabilistic Hierarchical Classifiers in Datasets of Ageing-Related Genes.
Q100445427	An FVS-based Approach to Attractor Detection in Asynchronous Random Boolean Networks
Q43486215	An IR-Aided Machine Learning Framework for the BioCreative II.5 Challenge
Q38394630	An IR-Based Approach Utilizing Query Expansion for Plagiarism Detection in MEDLINE.
Q47851944	An Improved Approach for N-linked Glycan Structure Identification from HCD MS/MS Spectra
Q30992604	An Improved Ensemble Learning Method for Classifying High-Dimensional and Imbalanced Biomedicine Data
Q57589553	An Improved Integral Inequality to Stability Analysis of Genetic Regulatory Networks With Interval Time-Varying Delays
Q92630964	An Improved Muti-task Learning Algorithm for Analyzing Cancer Survival Data
Q98200735	An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network
Q36337514	An Independent Filter for Gene Set Testing Based on Spectral Enrichment
Q90916436	An Inference Attack on Genomic Data Using Kinship, Complex Correlations, and Phenotype Information
Q89496867	An Integrated Approach for Identification of Functionally Similar MicroRNAs in Colorectal Cancer
Q38836345	An Integrated Approach to Anti-Cancer Drug Sensitivity Prediction
Q50856476	An Integrated Approach to Sequence-Independent Local Alignment of Protein Binding Sites.
Q38457977	An Integrated Framework for Functional Annotation of Protein Structural Domains
Q89498133	An Integrated Framework for Identifying Mutated Driver Pathway and Cancer Progression
Q89557918	An Integrated Reconciliation Framework for Domain, Gene, and Species Level Evolution
Q89557460	An Integrative Framework for Protein Interaction Network and Methylation Data to Discover Epigenetic Modules
Q51930675	An O(N2) algorithm for discovering optimal Boolean pattern pairs.
Q50856339	An O(m log m)-Time Algorithm for Detecting Superbubbles.
Q47181523	An Odd Parity Checker Prototype Using DNAzyme Finite State Machine
Q51864255	An Omega(n2/ log n) speed-up of TBR heuristics for the gene-duplication problem.
Q90176976	An Ontology-Independent Representation Learning for Similar Disease Detection Based on Multi-layer Similarity Network
Q40207750	An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification
Q40552874	An Optimized LMMSE Based Method for 3D MRI Denoising.
Q47936733	An Organelle Correlation-Guided Feature Selection Approach for Classifying Multi-Label Subcellular Bio-images
Q38501071	An Overview of BioCreative II.5.
Q89497725	An RJMCMC-Based Method for Tracking and Resolving Collisions of Drosophila Larvae
Q92962973	An Ultra-Fast and Parallelizable Algorithm for Finding k-Mismatch Shortest Unique Substrings
Q38403403	An Unsupervised Graph Based Continuous Word Representation Method for Biomedical Text Mining
Q44928297	An adaptive multimeme algorithm for designing HIV multidrug therapies
Q42635674	An adaptive window length strategy for eukaryotic CDS prediction
Q42861214	An algebraic spline model of molecular surfaces for energetic computations
Q51212883	An algorithmic game-theory approach for coarse-grain prediction of RNA 3D structure.
Q40037734	An annotation agnostic algorithm for detecting nascent RNA transcripts in GRO-seq
Q33579897	An approximation algorithm for the Noah's Ark problem with random feature loss
Q51807335	An approximation algorithm for the minimum breakpoint linearization problem.
Q51894666	An automatic translation of SBML into Beta-binders.
Q91331999	An effective solution for large scale single machine total weighted tardiness problem using lunar cycle inspired artificial bee colony algorithm
Q42018906	An efficient algorithm for approximating geodesic distances in tree space
Q45458861	An efficient algorithm for haplotype inference on pedigrees with recombinations and mutations.
Q93125072	An efficient algorithm for identifying mutated subnetworks associated with survival in cancer
Q51930801	An efficient algorithm for the identification of structured motifs in DNA promoter sequences.
Q95779615	An efficient alignment algorithm for searching simple pseudoknots over long genomic sequence
Q92073981	An efficient approach towards the source-target control of Boolean networks
Q34175775	An efficient method for exploring the space of gene tree/species tree reconciliations in a probabilistic framework
Q51568213	An efficient method for modeling kinetic behavior of channel proteins in cardiomyocytes.
Q91423081	An efficient trimming algorithm based on multi-feature fusion scoring model for NGS data
Q103812225	An enhanced Random Forests approach to predict heart failure from small imbalanced gene expression data
Q91831066	An ensemble method to reconstruct gene regulatory networks based on multivariate adaptive regression splines
Q46774996	An evaluation of information content as a metric for the inference of putative conserved noncoding regions in DNA sequences using a genetic algorithms approach.
Q34234782	An evolutionary algorithm approach for feature generation from sequence data and its application to DNA splice site prediction
Q92068832	An evolutionary profile guided greedy parallel replica-exchange Monte Carlo search algorithm for rapid convergence in protein design
Q51124875	An exact algorithm for the zero exemplar breakpoint distance problem.
Q46547589	An extended Kalman filtering approach to modeling nonlinear dynamic gene regulatory networks via short gene expression time series
Q44868645	An improved approximation algorithm for scaffold filling to maximize the common adjacencies
Q51659353	An improved heuristic algorithm for finding motif signals in DNA sequences.
Q50683704	An information theoretic approach to constructing robust Boolean gene regulatory networks.
Q31145280	An information theoretic exploratory method for learning patterns of conditional gene coexpression from microarray data
Q39275901	An integer programming formulation of the parsimonious loss of heterozygosity problem
Q92137545	An integrative framework for combining sequence and epigenomic data to predict transcription factor binding sites using deep learning
Q98200730	An integrative framework of heterogeneous genomic data for cancer dynamic modules based on matrix decomposition
Q46920581	An intelligent two-stage evolutionary algorithm for dynamic pathway identification from gene expression profiles
Q37319241	An introduction to metabolic networks and their structural analysis
Q45826735	An optimization rule for in silico identification of targeted overproduction in metabolic pathways
Q40262383	Analysis of Organization of the Interactome Using Dominating Sets: A Case Study on Cell Cycle Interaction Networks.
Q98200733	Analysis of Pattern Formation by Colored Petri Nets with Quantitative Regulation of Gene Expression Level
Q91770707	Analysis of Subtelomeric REXTAL Assemblies Using QUAST
Q51629712	Analysis of the free energy in a stochastic RNA secondary structure model.
Q40175964	Analysis of the genome sequence and prediction of B-cell epitopes of the envelope protein of Middle East respiratory syndrome-coronavirus
Q42727877	Analytical solution of steady-state equations for chemical reaction networks with bilinear rate laws
Q47998955	Analyzing Differential Regulatory Networks Modulated by Continuous-State Genomic Features in Glioblastoma Multiforme.
Q51931007	Analyzing gene expression time-courses.
Q45703938	Antibody-specified B-cell epitope prediction in line with the principle of context-awareness
Q33862299	Antilope--a Lagrangian relaxation approach to the de novo peptide sequencing problem.
Q46547920	Application of Dempster-Schafer method in family-based association studies.
Q47998936	Application of Fractal Theory on Motifs Counting in Biological Networks
Q31140803	Application of Genetic Programming (GP) Formalism for Building Disease Predictive Models from Protein-Protein Interactions (PPI) Data
Q47974339	Applications of Transductive Spectral Clustering Methods in a Military Medical Concussion Database
Q50803466	Applying Monte Carlo Simulation to Biomedical Literature to Approximate Genetic Network.
Q91770700	Approaching the One-sided Exemplar Adjacency Number Problem
Q50851495	Approximate Graph Edit Distance in Quadratic Time.
Q38418981	Approximate k-Mer Matching Using Fuzzy Hash Maps
Q43762875	Approximate maximum parsimony and ancestral maximum likelihood
Q45739097	Approximation algorithms for predicting RNA secondary structures with arbitrary pseudoknots
Q89559902	Are My EHRs Private Enough? Event-Level Privacy Protection
Q89558684	Arrhythmia Recognition and Classification Using ECG Morphology and Segment Feature Analysis
Q90977576	Artificial Fish Swarm Optimization Based Method to Identify Essential Proteins
Q89560608	Assessing the Effectiveness of Causality Inference Methods for Gene Regulatory Networks
Q51779377	Assessing the discordance of multiple sequence alignments.
Q38378599	Assessment of semantic similarity between proteins using information content and topological properties of the Gene Ontology graph
Q45938204	Assignment of orthologous genes via genome rearrangement.
Q31067122	Associative clustering for exploring dependencies between functional genomics data sets
Q84792272	Assortative mixing in directed biological networks
Q50302991	Asymmetric comparison and querying of biological networks.
Q40448167	Asymptotic Properties of the Number of Matching Coalescent Histories for Caterpillar-Like Families of Species Trees.
Q39292188	Attention Recognition in EEG-Based Affective Learning Research Using CFS+KNN Algorithm
Q31067087	Attribute clustering for grouping, selection, and classification of gene expression data.
Q87221092	Authentication of Medicines Using Nuclear Quadrupole Resonance Spectroscopy
Q58570057	Automated Cell Tracking using Motion Prediction-based Matching and Event Handling
Q89558097	Automated ICD-9 Coding via A Deep Learning Approach
Q33568402	Automated hierarchical density shaving: a robust automated clustering and visualization framework for large biological data sets
Q51631692	Automated isolation of translational efficiency bias that resists the confounding effect of GC(AT)-content.
Q30362118	Automatic Myonuclear Detection in Isolated Single Muscle Fibers Using Robust Ellipse Fitting and Sparse Representation.
Q43671647	Automatic detection of large dense-core vesicles in secretory cells and statistical analysis of their intracellular distribution
Q38466607	Automatic identification and classification of noun argument structures in biomedical literature
Q39938665	Autumn Algorithm - Computation of Hybridization Networks for Realistic Phylogenetic Trees
Q30992729	BM-SNP: A Bayesian Model for SNP Calling Using High Throughput Sequencing Data.
Q30093213	BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model
Q34554612	BRANE Clust: Cluster-Assisted Gene Regulatory Network Inference Refinement
Q92743999	BRWMDA:Predicting microbe-disease associations based on similarities and bi-random walk on disease and microbe networks
Q58592059	Backpropagation Approach Supported by Image Compression Algorithm for the Classification of Chronic Condition Diseases
Q98200746	Barapost: binning of nucleotide sequences according to taxonomic annotation
Q83264773	Barking up the wrong treelength: the impact of gap penalty on alignment and tree accuracy
Q42600814	Bases of motifs for generating repeated patterns with wild cards.
Q90693967	Basins of Attraction, Commitment Sets and Phenotypes of Boolean Networks
Q39533639	Batch Mode TD(λ) for Controlling Partially Observable Gene Regulatory Networks
Q91402722	Bayesian Data Fusion of Gene Expression and Histone Modification Profiles for Inference of Gene Regulatory Network
Q52612075	Bayesian Multiresolution Variable Selection for Ultra-High Dimensional Neuroimaging Data.
Q89496930	Bayesian Network Construction and Genotype-Phenotype Inference Using GWAS Statistics
Q36817641	Bayesian Normalization Model for Label-Free Quantitative Analysis by LC-MS.
Q50947134	Bayesian basecalling for DNA sequence analysis using hidden Markov models.
Q92630770	Bayesian inference in Y-linked two-sex branching processes with mutations: ABC approach
Q102215307	Bayesian inference of stochastic dynamic models using early-rejection methods based on sequential stochastic simulations
Q104266279	Bayesian modeling for epistasis analysis using data-driven reversible jump
Q43430588	Bayesian models and algorithms for protein β-sheet prediction
Q51930803	Bayesian segmental models with multiple sequence alignment profiles for protein secondary structure and contact map prediction.
Q39743408	Benchmark dataset for Whole Genome sequence compression
Q40554862	Beyond Fixed-Resolution Alignment-Free Measures for Mammalian Enhancers Sequence Comparison
Q37507179	Bi-convex Optimization to Learn Classifiers from Multiple Biomedical Annotations
Q31140811	Bi-level and Bi-objective p-Median Type Problems for Integrative Clustering: Application to Analysis of Cancer Gene-Expression and Drug-Response Data
Q89497920	Bi-level error correction for PacBio long reads
Q92073975	BiClusO: A novel biclustering approach and its application to species-VOC relational data
Q91328445	BiModule: biclique modularity strategy for identifying transcription factor and microRNA co-regulatory modules
Q31067714	Biclustering algorithms for biological data analysis: a survey
Q31067065	Biclustering models for structured microarray data.
Q40552900	Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes
Q121183941	Bidirectional Association Discovery Leads to Precise Identification of Lung Cancer Biomarkers and Genome Taxa Class
Q51909306	Bidirectional Long Short-Term Memory Networks for predicting the subcellular localization of eukaryotic proteins.
Q104266283	BigMPI4py: Python module for parallelization of Big Data objects discloses germ layer specific DNA demethylation motifs
Q46323465	Bijective Diameters of Gene Tree Parsimony Costs
Q92597140	Bio-Curation for Cellular Signalling: The KAMI Project
Q35769082	Bio-Driven Cell Region Detection in Human Embryonic Stem Cell Assay
Q29580498	BioExtract server--an integrated workflow-enabling system to access and analyze heterogeneous, distributed biomolecular data
Q44068660	BioLMiner System: Interaction Normalization Task and Interaction Pair Task in the BioCreative II.5 Challenge
Q89557753	Bioimage Classification with Handcrafted and Learned Features
Q92155595	Bioimage-based Prediction of Protein Subcellular Location in Human Tissue with Ensemble Features and Deep Networks
Q89558696	Bioinformatic workflow extraction from scientific texts based on word sense disambiguation and relation extraction
Q57192519	Biological Event Trigger Identification with Noise Contrastive Estimation
Q45959478	Biological Sequence Analysis with Multivariate String Kernels.
Q45957977	Biological sequence classification with multivariate string kernels.
Q89556375	Biomarker Identification for Cancer Disease Using Biclustering Approach: An Empirical Study
Q30992612	Biomarker Signature Discovery from Mass Spectrometry Data
Q34368126	Biomarker identification and cancer classification based on microarray data using Laplace naive Bayes model with mean shrinkage
Q90300355	Biomedical Knowledge Graphs Construction from Conditional Statements
Q89555463	BitMapper2: a GPU-accelerated all-mapper based on the sparse q-gram index
Q94584561	Boltzmann Machine Learning and Regularization Methods for Inferring Evolutionary Fields and Couplings from a Multiple Sequence Alignment
Q45423910	Boolean networks with multiexpressions and parameters
Q35801581	Boosting the FM-Index on the GPU: Effective Techniques to Mitigate Random Memory Access.
Q57157963	Bounded Fuzzy Possibilistic Method reveals information about lung cancer through analysis of metabolomics
Q50551337	BowMapCL: Burrows-Wheeler Mapping on Multiple Heterogeneous Accelerators.
Q51419766	BpMatch: an efficient algorithm for a segmental analysis of genomic sequences.
Q39004713	Brain Modulyzer: Interactive Visual Analysis of Functional Brain Connectivity
Q92209442	Branching out to Speciation in a Model of Fractionation: the Malvaceae
Q33403997	Budgeted phylogenetic diversity on circular split systems
Q50688889	Building Ancestral Recombination Graphs for Whole Genomes.
Q50856822	Building Specific Signals from Frequency Chaos Game and Revealing Periodicities Using a Smoothed Fourier Analysis.
Q50856323	Building Transcriptional Association Networks in Cytoscape with RegNetC.
Q45953463	Burial Level Change Defines a High Energetic Relevance for Protein Binding Interfaces.
Q30701618	CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data using Restricted Search Space and Intelligent Random Sampling
Q30389235	CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules
Q92188111	CCFS: A Confidence-based Cost-effective feature selection scheme for healthcare data classification
Q90457502	CDPath: Cooperative driver pathways discovery using integer linear programming and Markov clustering
Q36368446	CEDER: accurate detection of differentially expressed genes by combining significance of exons using RNA-Seq
Q92822100	CGIDLA: Developing the Web Server for CpG Island related Density and LAUPs (Lineage-associated Underrepresented Permutations) Study
Q123015735	CIPHER-SC: Disease-Gene Association Inference Using Graph Convolution on a Context-Aware Network with Single-Cell Data
Q98200724	CIR-Net: Automatic Classification of Human Chromosome based on Inception-ResNet Architecture
Q30363155	CISA: combined NMR resonance connectivity information determination and sequential assignment.
Q40448876	CMStalker: A Combinatorial Tool for Composite Motif Discovery.
Q90457492	CNAPE: A Machine Learning Method for Copy Number Alteration Prediction from Gene Expression
Q98200702	CNN-RNN Based Intelligent Recommendation for Online Medical Pre-Diagnosis Support
Q92630968	CNV_IFTV: an isolation forest and total variation-based detection of CNVs from short-read sequencing data
Q113806831	COMBING: Clustering in Oncology for Mathematical and Biological Identification of Novel Gene Signatures
Q93389944	CONDEL: Detecting Copy Number Variation and Genotyping Deletion Zygosity from Single Tumor Samples using Sequence Data
Q58592038	COPCOP: A Novel Algorithm and Parallel Optimization Framework for Co-Evolutionary Domain Detection
Q90338210	CORAL: Verification-aware OpenCL based Read Mapper for Heterogeneous Systems
Q40552983	COSPEDTree: COuplet Supertree by Equivalence Partitioning of Taxa Set and DAG Formation
Q51384950	CSD homomorphisms between phylogenetic networks.
Q48059842	CUDA-BLASTP: accelerating BLASTP on CUDA-enabled graphics hardware
Q58592045	CURatio: Genome-wide phylogenomic analysis method using ratios of total branch lengths
Q93210703	Cache Friendly Optimisation of de Bruijn Graph based Local Re-assembly in Variant Calling
Q51675149	Cache-Oblivious Dynamic Programming for Bioinformatics
Q50775173	Calcium Ion Fluctuations Alter Channel Gating in a Stochastic Luminal Calcium Release Site Model.
Q89560411	Calculating the Unrooted Subtree Prune-and-Regraft Distance
Q40157993	Calculating the expected time to eradicate HIV-1 using a Markov Chain
Q37730783	Cancer Progression Prediction Using Gene Interaction Regularized Elastic Net.
Q31140806	Cancer Subtype Discovery Based on Integrative Model of Multigenomic Data
Q33579902	Cancer classification from gene expression data by NPPC ensemble
Q93000792	Capsule Network based Modeling of Multi-omics Data for Discovery of Breast Cancer-related Genes
Q90338207	Capsule Network for Predicting RNA-Protein Binding Preferences Using Hybrid Feature
Q35769493	Capturing Uncertainty by Modeling Local Transposon Insertion Frequencies Improves Discrimination of Essential Genes.
Q50873351	Cascaded bidirectional recurrent neural networks for protein secondary structure prediction.
Q90588823	Categorical Matrix Completion with Active Learning for High-throughput Screening
Q92596975	Causal Disturbance Analysis: A Novel Graph Centrality Based Method for Pathway Enrichment Analysis
Q90736149	Causal Reasoning on Boolean Control Networks Based on Abduction: Theory and Application to Cancer Drug Discovery
Q92743995	CaverDock: A Novel Method for the Fast Analysis of Ligand Transport
Q91373196	Celiac Disease Detection from Videocapsule Endoscopy Images Using Strip Principal Component Analysis
Q91032689	Cell Mechanics Based Computational Classification of Red Blood Cells Via Machine Intelligence Applied to Morpho-Rheological Markers
Q31046958	ChIP-PIT: Enhancing the Analysis of ChIP-Seq Data Using Convex-Relaxed Pair-Wise Interaction Tensor Decomposition
Q43599736	Chain-RNA: a comparative ncRNA search tool based on the two-dimensional chain algorithm.
Q40207383	Characteristic Gene Selection Based on Robust Graph Regularized Non-Negative Matrix Factorization
Q38955303	Characteristics of Myosin V Processivity
Q89765816	Characterizing intra-tumor heterogeneity from somatic mutations without copy-neutral assumption
Q51133204	Characterizing the topology of probabilistic biological networks.
Q89497037	Chemical Transformation Motifs-Modelling Pathways as Integer Hyperflows
Q30725172	Chemical name extraction based on automatic training data generation and rich feature set.
Q90655243	ChimST: An Efficient Spectral Library Search Tool for Peptide Identification from Chimeric Spectra in Data-dependent Acquisition
Q89551370	ChromStruct 4: A Python Code to Estimate the Chromatin Structure from Hi-C Data
Q89558092	Chromatin 3D Reconstruction from Chromosomal Contacts Using a Genetic Algorithm
Q102373227	Circadian rhythm regulated by tumor suppressor p53 and time delay in unstressed cells
Q39005076	Circular Order Aggregation and its Application to Cell-cycle Genes Expressions.
Q90441616	Class Balanced Multifactor Dimensionality Reduction to Detect Gene-Gene Interactions
Q51351049	ClassAMP: a prediction tool for classification of antimicrobial peptides.
Q89179630	Classical Mechanics Approach Applied to Analysis of Genetic Oscillators
Q47998964	Classification of Alzheimer's Disease Using Whole Brain Hierarchical Network
Q92188106	Classification of Antibacterial Peptides using Long Short-Term Memory Recurrent Neural Networks
Q51654571	Classification of GPCRs using family specific motifs.
Q91770775	Classification of Patients with Coronary Microvascular Dysfunction
Q30393315	Classification of Protein Structure Classes on Flexible Neutral Tree
Q47426150	Classification of Single-cell Gene Expression Trajectories from Incomplete and Noisy Data
Q50571398	Classification of State Trajectories in Gene Regulatory Networks.
Q91296623	Classification of a DNA Microarray for Diagnosing Cancer Using a Complex Network Based Method
Q51675168	Classification of protein-protein interaction full-text documents using text and citation network features.
Q30379022	Classifying Protein Sequences Using Regularized Multi-Task Learning.
Q30992438	Classifying the Progression of Ductal Carcinoma from Single-Cell Sampled Data via Integer Linear Programming: A Case Study
Q38965391	ClusterViz: A Cytoscape APP for Cluster Analysis of Biological Network
Q30408599	Clustering 100,000 protein structure decoys in minutes
Q98200705	Clustering Based Parameter Estimation of Thyroid Hormone Pathway
Q47900283	Clustering and Integrating of Heterogeneous Microbiome Data by Joint Symmetric Nonnegative Matrix Factorization with Laplacian Regularization
Q47651832	Clustering-based Compression for Population DNA Sequences
Q51629723	Co-evolution is incompatible with the Markov assumption in phylogenetics.
Q46666616	Co-expression Network Approach to Studying the Effects of Botulinum Neurotoxin-A.
Q40207767	CoGI: Towards Compressing Genomes as an Image
Q42004757	Coalescent histories for caterpillar-like families
Q30662387	Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data
Q38513008	Coclustering of human cancer microarrays using Minimum Sum-Squared Residue coclustering
Q47999591	Codon Context Optimization in Synthetic Gene Design
Q47707002	Coevolutionary Structure-Redesigned-Based Bacterial Foraging Optimization
Q44302266	CollHaps: A Heuristic Approach to Haplotype Inference by Parsimony
Q50491862	Collective Prediction of Disease-Associated miRNAs Based on Transduction Learning.
Q92882493	Colored Network Motif Analysis by Dynamic Programming Approach: An Application in Host-Pathogen Interaction Network
Q45879140	Colored Noise Induced Bistable Switch in the Genetic Toggle Switch Systems.
Q40245259	Colored de Bruijn graphs and the genome halving problem
Q38287728	Combination of Supervised and Unsupervised Approaches for miRNA Target Prediction
Q30156085	Combinatorial Analysis for Sequence and Spatial Motif Discovery in Short Sequence Fragments
Q51623464	Combinatorial approaches for mass spectra recalibration.
Q89944135	Combinatorics of Tandem Duplication Random Loss Mutations on Circular Genomes
Q43614219	Combined feature selection and cancer prognosis using support vector machine regression.
Q114085189	Combining K Nearest Neighbor With Nonnegative Matrix Factorization for Predicting Circrna-Disease Associations
Q89560188	Combining Context and Knowledge Representations for Chemical-Disease Relation Extraction
Q57184683	Combining High Speed ELM Learning with a Deep Convolutional Neural Network Feature Encoding for Predicting Protein-RNA Interactions
Q31067114	Combining sequence and time series expression data to learn transcriptional modules
Q51526233	Comment on "SCS: signal, context, and structure features for genome-wide human promoter recognition".
Q89553748	Comorbidity Scoring with Causal Disease Networks
Q51909310	Comparing compressed sequences for faster nucleotide BLAST searches.
Q51901936	Comparing genomes with duplications: a computational complexity point of view.
Q94583483	Comparing phylogenetic approaches to reconstructing cell lineage from microsatellites with missing data
Q51929484	Comparing tandem repeats with duplications and excisions of variable degree.
Q57176593	Comparison of INDEL Calling Tools with Simulation Data and Real Short-Read Data
Q45947777	Comparison of Machine Learning Approaches for Prediction of Advanced Liver Fibrosis in Chronic Hepatitis C Patients.
Q89557928	Comparison of computational methods for imputing single-cell RNA-sequencing data
Q53127405	Comparison of feature selection methods for cross-laboratory microarray analysis.
Q51676230	Comparison of galled trees.
Q33513810	Comparison of tree-child phylogenetic networks
Q50345456	Complex network measures in Autism Spectrum Disorders.
Q48001213	Complexity and algorithms for finding a perfect phylogeny from mixed tumor samples
Q51593720	Component-based modeling and reachability analysis of genetic networks.
Q91270034	Composable Rate-Independent Computation in Continuous Chemical Reaction Networks
Q46587409	Composition vector method based on maximum entropy principle for sequence comparison
Q98200714	Compressed Sparse FM-Index: Fast Sequence Alignment Using Large K-Steps
Q40207744	Compression of Multiple DNA Sequences Using Intra-Sequence and Inter-Sequence Similarities
Q48594093	Compression of annotated nucleotide sequences.
Q41023659	Computational 3D Assembling Methods for DNA: A Survey.
Q90155715	Computational Approaches to Detect Illicit Drug Ads and Find Vendor Communities Within Social Media Platforms
Q89557569	Computational Drug Repositioning with Random Walk on a Heterogeneous Network
Q57092786	Computational Models for Trapping Ebola Virus Using Engineered Bacteria
Q88248300	Computational Prediction of Pathogenic Network Modules in Fusarium verticillioides
Q89556287	Computational Prediction of Sigma-54 Promoters in Bacterial Genomes by Integrating Motif Finding and Machine Learning Strategies
Q90155699	Computational approach to the systematic prediction of glycolytic abilities: looking into human microbiota
Q30373151	Computational approaches for automatic structural analysis of large biomolecular complexes.
Q48362135	Computational problems in perfect phylogeny haplotyping: typing without calling the allele.
Q34357643	Computational reconstruction of transcriptional relationships from ChIP-chip data
Q43489295	Computer-aided biophysical modeling: a quantitative approach to complex biological systems.
Q90176970	Computerized Classification of Prostate Cancer Gleason Scores from Whole Slide Images
Q50856621	Computing Elementary Flux Modes Involving a Set of Target Reactions.
Q38708833	Computing Manhattan Path-Difference MedianTrees: a Practical Local Search Approach
Q62729934	Computing Minimum Reaction Modifications in a Boolean Metabolic Network
Q51667416	Computing a Smallest Multilabeled Phylogenetic Tree from Rooted Triplets
Q33331318	Computing phylogenetic diversity for split systems
Q89559878	Computing the Diameter of the Space of Maximum Parsimony Reconciliations in the Duplication-Transfer-Loss Model
Q93178188	Computing the Inversion-Indel Distance
Q51807326	Computing the distribution of a tree metric.
Q51909305	Computing the hybridization number of two phylogenetic trees is fixed-parameter tractable.
Q51127025	Computing the joint distribution of tree shape and tree distance for gene tree inference and recombination detection.
Q40448929	Concurrent and Accurate Short Read Mapping on Multicore Processors.
Q39858215	Conditioning-based modeling of contextual genomic regulation
Q30395917	Conformational sampling of a biomolecular rugged energy landscape.
Q93101388	Connectivity significance for disease gene prioritization in an expanding universe
Q47735477	Consensus genetic maps as median orders from inconsistent sources
Q90716137	Consensus of all Solutions for Intractable Phylogenetic Tree Inference
Q51853541	Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference.
Q38911259	Constructing DNA Barcode Sets based on Particle Swarm Optimization
Q89556113	Constructing Disease Similarity Networks Based on Disease Module Theory
Q89497131	Constructing Pathway-Based Priors within a Gaussian Mixture Model for Bayesian Regression and Classification
Q45212373	Constructing a Gene Team Tree in Almost O(n lg n) Time
Q38517573	Constructing and analyzing a large-scale gene-to-gene regulatory network--lasso-constrained inference and biological validation
Q44766539	Constructing and drawing regular planar split networks
Q51582105	Constructing complex 3D biological environments from medical imaging using high performance computing.
Q51779349	Constructing level-2 phylogenetic networks from triplets.
Q51930817	Constructing splits graphs.
Q90916431	Construction of Signaling Pathways with RNAi Data and Multiple Reference Networks
Q38967494	Construction of refined protein interaction network for predicting essential proteins.
Q91122513	Constructive prediction of potential RNA aptamers for a protein target
Q38646924	Continuous Petri Nets and microRNA analysis in melanoma.
Q33696989	Continuous cotemporal probabilistic modeling of systems biology networks from sparse data
Q50526312	Contour extraction of Drosophila embryos.
Q89555621	Control of Gene Regulatory Networks Using Bayesian Inverse Reinforcement Learning
Q89557755	Controllability Analysis of A Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families
Q47831768	Controlling mRNA Translation
Q102147701	Controlling the Effects of External Perturbations on a Gene Regulatory Network using Proportional-Integral-Derivative Controller
Q98200701	Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing
Q93178191	Convolutional Neural Network with Graphical Lasso to Extract Sparse Topological Features for Brain Disease Classification
Q91482005	Cophenetic Median Trees
Q40207799	Cophylogenetic Reconciliation with ILP.
Q38863608	Copy Number Variations Detection: unravelling the problem in tangible aspects
Q45886041	Correcting base-assignment errors in repeat regions of shotgun assembly.
Q96120930	Correction to "A Reaction-Based Model of the State Space of Chemical Reaction Systems Enables Efficient Simulations"
Q89021212	Correction to "Detecting Essential Proteins Based on Network Topology, Gene Expression Data, and Gene Ontology Information"
Q89592909	Correction to "Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer"
Q104129647	Corrections to "Comorbidity Scoring With Causal Disease Networks"
Q104129648	Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads"
Q98200704	Correlated Motions and Dynamics in Different Domains of EGFR with L858R and T790M Mutations
Q38403038	Correlation between gene expression and GO semantic similarity
Q51930791	Correlation statistics for cDNA microarray image analysis.
Q57997350	Cortical Thinning and Cognitive Impairment in Parkinson's Disease without Dementia
Q46354656	Counting all possible ancestral configurations of sample sequences in population genetics
Q47964339	Coupling Effect of Double Lungs on a VCV Ventilator with Automatic Secretion Clearance Function.
Q40555844	Coupling Graphs, Efficient Algorithms and B-Cell Epitope Prediction
Q89498136	Credibility of Evolutionary Events in Gene Trees
Q89802014	Cross-Domain Classification Model with Knowledge Utilization Maximization for Recognition of Epileptic EEG Signals
Q90338200	Cross-Species Protein Function Prediction with Asynchronous-Random Walk
Q91770745	Cross-species Data Classification by Domain Adaptation via Discriminative Heterogeneous Maximum Mean Discrepancy
Q91548142	CrystalM: a multi-view fusion approach for protein crystallization prediction
Q38404049	Curatable Named-Entity Recognition Using Semantic Relations
Q46681379	Curvature analysis of cardiac excitation wavefronts
Q53374384	D-Map: Random Walking on Gene Network Inference Maps Towards differential Avenue Discovery.
Q90016559	D-UNet: a dimension-fusion U shape network for chronic stroke lesion segmentation
Q30430979	DALIX: optimal DALI protein structure alignment.
Q50856388	DAPD: A Knowledgebase for Diabetes Associated Proteins.
Q98200734	DCHap: A divide-and-conquer haplotype phasing algorithm for third-generation sequences
Q91272910	DFseq: Distribution-Free Method to Detect Differential Gene Expression for RNA-Sequencing Data
Q50989368	DICLENS: divisive clustering ensemble with automatic cluster number.
Q91570600	DMFLDA: A deep learning framework for predicting IncRNA-disease associations
Q98573216	DMFMDA: Prediction of microbe-disease associations based on deep matrix factorization using Bayesian Personalized Ranking
Q47874707	DNA Assembly with De Bruijn Graphs Using an FPGA Platform
Q40555777	DNA Copy Number Selection Using Robust Structured Sparsity-Inducing Norms
Q44674581	DNA deformation energy as an indirect recognition mechanism in protein-DNA interactions
Q51894664	DNA motif representation with nucleotide dependency.
Q47927009	DNA watermarking using Codon Postfix technique.
Q89497964	DNRLMF-MDA:Predicting microRNA-Disease Associations Based on Similarities of microRNAs and Diseases
Q90457496	DORMAN: Database Of Reconstructed MetAbolic Networks
Q104799552	DPCMNE: detecting protein complexes from protein-protein interaction networks via multi-level network embedding
Q40207792	DPNuc: Identifying Nucleosome Positions Based on the Dirichlet Process Mixture Model.
Q90338203	DSTPCA: Double-Sparse Constrained Tensor Principal Component Analysis Method for Feature Selection
Q46583236	DTL-RnB: Algorithms and Tools for Summarizing the Space of DTL Reconciliations
Q90155919	Data Convexity and Parameter Independent Clustering for Biomedical Datasets
Q31107813	Data Management for Heterogeneous Genomic Datasets
Q30992796	Data Requirement for Phylogenetic Inference from Multiple Loci: A New Distance Method
Q31111286	Data mining and predictive modeling of biomolecular network from biomedical literature databases
Q84200485	Data mining in bioinformatics: selected papers from BIOKDD
Q33793090	Data mining on DNA sequences of hepatitis B virus.
Q91548151	Data-Driven Robust Control for a Closed-Loop Artificial Pancreas
Q31134999	Data-dependent kernel machines for microarray data classification
Q101061391	Data-driven and Knowledge-based Algorithms for Gene Network Reconstruction on High-dimensional Data
Q91242360	Data-enabled Digestive Medicine: A New Big Data Analytics Platform
Q33530835	Data-fusion in clustering microarray data: balancing discovery and interpretability
Q98200717	De novo Protein Structure Prediction by Coupling Contact with Distance Profile
Q38404923	De novo design of potential RecA inhibitors using multi objective optimization
Q98470071	Deciphering key genes and miRNAs associated with Hepatocellular carcinoma via network-based approach
Q39687591	Decoding Genetic Variations: Communications-Inspired Haplotype Assembly
Q44991644	Decomposition of flux distributions into metabolic pathways
Q45950231	Deep Conditional Random Field Approach to Transmembrane Topology Prediction and Application to GPCR Three-Dimensional Structure Modeling.
Q93123078	Deep Learning Benchmarks on L1000 Gene Expression Data
Q89552478	Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images
Q89557933	Deep Learning for Plant Species Classification Using Leaf Vein Morphometric
Q104571838	Deep Learning in Drug Design: Protein-Ligand Binding Affinity Prediction
Q90441608	Deep Manifold Preserving Autoencoder for Classifying Breast Cancer Histopathological Images
Q90939193	Deep Neural Networks for In Situ Hybridization Grid Completion and Clustering
Q90655249	Deep Pathway Analysis V2.0: A Pathway Analysis Framework Incorporating Multi-dimensional Omics Data
Q98719575	Deep Reinforcement Learning Based Progressive Sequence Saliency Discovery Network for Mitosis Detection In Time-Lapse Phase-Contrast Microscopy Images
Q93176089	Deep Robust Framework for Protein Function Prediction using Variable-Length Protein Sequences
Q115035608	Deep Transfer Learning-Based Multi-Object Detection for Plant Stomata Phenotypic Traits Intelligent Recognition
Q98200747	Deep bidirectional classification model for COVID-19 disease infected patients
Q92743997	Deep collaborative filtering for prediction of disease genes
Q93100205	Deep convolutional and recurrent neural networks for cell motility discrimination and prediction
Q91548154	Deep learning for automated feature discovery and classification of sleep stages
Q114085190	Deep nonnegative matrix factorization using a variational autoencoder with application to single-cell RNA sequencing data
Q91270030	DeepDRBP-2L: a new genome annotation predictor for identifying DNA binding proteins and RNA binding proteins using Convolutional Neural Network and Long Short-Term Memory
Q92440053	DeepDSC: A Deep Learning Method to Predict Drug Sensitivity of Cancer Cell Lines
Q98200718	DeepOlf: Deep neural network based architecture for predicting odorants and their interacting Olfactory Receptors
Q92822166	DeepSeed Local Graph Matching for Densely Packed Cells Tracking
Q51864251	Defining and computing optimum RMSD for gapped and weighted multiple-structure alignment.
Q89765804	Definition and usage of texture feature for biological sequence
Q93368003	Deleterious Non-Synonymous Single Nucleotide Polymorphism Predictions on Human Transcription Factors
Q92560161	Deletion detection method using the distribution of insert size and a precise alignment strategy
Q31095404	Derivative-Free Optimization of Rate Parameters of Capsid Assembly Models from Bulk in Vitro Data
Q38036229	Design and analysis of classifier learning experiments in bioinformatics: survey and case studies
Q98200751	Designing Uncorrelated Address Constrain for DNA Storage by DMVO Algorithm
Q91929225	Designing a new multi-epitope pertussis vaccine with highly population coverage based on a novel sequence and structural filtration algorithm
Q48054578	Designing filters for fast-known NcRNA identification.
Q39339866	Designing integrated computational biology pipelines visually
Q33670019	Designing logical rules to model the response of biomolecular networks with complex interactions: an application to cancer modeling
Q89555452	Designing optimal experiments to discriminate interaction graph models
Q45733410	Designing patterns and profiles for faster HMM search
Q45101557	Designing pooling systems for noisy high-throughput protein-protein interaction experiments using boolean compressed sensing.
Q35066184	Designing template-free predictor for targeting protein-ligand binding sites with classifier ensemble and spatial clustering
Q30992557	Detecting Differentially Coexpressed Genes from Labeled Expression Data: A Brief Review.
Q98781608	Detecting Disease-Associated SNP-SNP Interactions Using Progressive Screening Memetic Algorithm
Q31135937	Detecting Essential Proteins Based on Network Topology, Gene Expression Data and Gene Ontology Information
Q50850804	Detecting Functional Modules Based on a Multiple-Grain Model in Large-Scale Protein-Protein Interaction Networks.
Q31002117	Detecting Multivariate Gene Interactions in RNA-Seq Data Using Optimal Bayesian Classification
Q89497918	Detecting Population-Differentiation Copy Number Variants in Human Population Tree by Sparse Group Selection
Q39201707	Detecting Protein Complexes Based on Uncertain Graph Model
Q40207737	Detecting Protein Complexes from Signed Protein-Protein Interaction Networks
Q92560150	Detecting clustered independent rare variant associations using genetic algorithms
Q38881960	Detecting pairwise interactive effects of continuous random variables for bimarker identification with small sample size
Q34252449	Detecting phenotype-specific interactions between biological processes from microarray data and annotations
Q39778544	Detection Copy Number Variants from NGS with Sparse and Smooth Constraints.
Q89497852	Detection and Recognition for Life State of Cell Cancer Using Two-Stage Cascade CNNs
Q91482010	Detection of Colorectal Carcinoma Based on Microbiota Analysis Using Generalized Regression Neural Networks and Nonlinear Feature Selection
Q89558675	Detection of Driver Modules with Rarely Mutated Genes in Cancers
Q104799550	Detection of Phenotype-related Mutations of COVID-19 via the Whole Genomic Data
Q41006789	Detection of Replication Origin Sites in Herpesvirus Genomes by Clustering and Scoring of Palindromes with Quadratic Entropy Measures
Q44491653	Detection of outlier residues for improving interface prediction in protein heterocomplexes.
Q43798640	Determination of glycan structure from tandem mass spectra
Q38404094	Determining Semantically Related Significant Genes.
Q90441600	Developing a Multi-Dose Computational Model for Drug-Induced Hepatotoxicity Prediction Based on Toxicogenomics Data
Q31120410	Development of two-stage SVM-RFE gene selection strategy for microarray expression data analysis
Q57055867	Differential Expression Analysis of RNA-seq Reads: Overview, Taxonomy and Tools
Q93078464	Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model
Q89555459	Differentiating prostate cancer from benign prostatic hyperplasia using PSAD based on machine learning: Single-center retrospective study in China
Q31067105	Dimension reduction-based penalized logistic regression for cancer classification using microarray data
Q39778549	DiscMLA: An Efficient Discriminative Motif Learning Algorithm over High-Throughput Datasets
Q40553517	Discovering Binding Cores in Protein-DNA Binding Using Association Rule Mining with Statistical Measures
Q40873548	Discovering Condition Specific Topological Pattern Changes in Coexpression Network: An Application to HIV-1 Progression
Q91570576	Discovering Essential Multiple Gene Effects through Large Scale Optimization: an Application to Human Cancer Metabolism
Q40352103	Discovering Gene Regulatory Elements Using Coverage-based Heuristics
Q50711093	Discovering Motifs in Biological Sequences Using the Micron Automata Processor.
Q40578098	Discovering Protein-DNA Binding Cores by Aligned Pattern Clustering
Q50853901	Discovering Recurrent Copy Number Aberrations in Complex Patterns via Non-Negative Sparse Singular Value Decomposition.
Q31067074	Discovering coherent biclusters from gene expression data using zero-suppressed binary decision diagrams.
Q51118298	Discovering gene networks with a neural-genetic hybrid.
Q31151774	Discovering perturbation of modular structure in HIV progression by integrating multiple data sources through non-negative matrix factorization
Q47667259	Discovery of Functional Motifs from the Interface Region of Oligomeric Proteins using Frequent Subgraph Mining.
Q40554211	Discovery of Spatially Cohesive Itemsets in Three-Dimensional Protein Structures
Q91055790	Discriminant Projection Shared Dictionary Learning for Classification of Tumors Using Gene Expression Data
Q34632387	Discriminative motif finding for predicting protein subcellular localization
Q89497830	Disease Gene Prediction by Integrating PPI Networks, Clinical RNA-Seq Data and OMIM Data
Q33839137	Disease liability prediction from large scale genotyping data using classifiers with a reject option.
Q90491409	Disruption of Protein Complexes from Weighted Complex Networks
Q92822125	Dissipativity-based filtering for switched genetic regulatory networks with stochastic disturbances and time-varying delays
Q40555461	Distance-Based Phylogenetic Methods Around a Polytomy
Q45194782	Distinguishing endogenous retroviral LTRs from SINE elements using features extracted from evolved side effect machines
Q46599894	Distorted metrics on trees and phylogenetic forests
Q50748990	Disturbance Decoupling of Singular Boolean Control Networks.
Q51638318	Disturbance analysis of nonlinear differential equation models of genetic SUM regulatory networks.
Q30379031	Disulfide Connectivity Prediction Based on Modelled Protein 3D Structural Information and Random Forest Regression.
Q40552905	Divide and Conquer Approach to Contact Map Overlap Problem Using 2D-Pattern Mining of Protein Contact Networks
Q90655027	Does Relaxing the Infinite Sites Assumption Give Better Tumor Phylogenies? An ILP-Based Comparative Approach
Q40554822	Double Selection Based Semi-Supervised Clustering Ensemble for Tumor Clustering from Gene Expression Profiles.
Q89555638	DrPOCS: Drug Repositioning Based on Projection Onto Convex Sets
Q51618103	Drawing rooted phylogenetic networks.
Q30104504	Drosophila gene expression pattern annotation through multi-instance multi-label learning
Q89559865	Drug Selection via Joint Push and Learning to Rank
Q89560932	Drug Side-effect Profiles Prediction: From Empirical Risk Minimization to Structural Risk Minimization
Q38765625	Drug target prediction by multi-view low rank embedding
Q39987206	Drug-Target Interaction Prediction with Graph Regularized Matrix Factorization.
Q90109342	Drug-Target Interaction Prediction: End-to-End Deep Learning Approach
Q104483636	Drug-resistant Cancer Treatment Strategies Based on the Dynamics of Clonal Evolution and PKPD Modeling of Drug Combinations
Q89837354	Dual Hyper-graph Regularized Supervised NMF for Selecting Differentially Expressed Genes and Tumor Classification
Q98459005	Dual Triggered Correspondence Topic (DTCT) model for MeSH annotation
Q90939393	Dual-Layer Strengthened Collaborative Topic Regression Modeling for Predicting Drug Sensitivity
Q89555373	Dynamical Detection of Boundaries and Cavities in Biophysical Cell-Based Simulations of Growing Tumor Tissues
Q86615158	Dynamical Robustness against Multiple Mutations in Signaling Networks
Q51915917	Dynamical systems for discovering protein complexes and functional modules from biological networks.
Q50951055	Dynamics in Epistasis Analysis.
Q94584556	EBST: An Evolutionary Multi-Objective Optimization Based Tool for Discovering Potential Biomarkers in Ovarian Cancer
Q64964845	EBWS: Essential Bioinformatics Web Services for Sequence Analyses.
Q45382005	EEG/ERP adaptive noise canceller design with controlled search space (CSS) approach in cuckoo and other optimization algorithms.
Q89558671	ELF: Extract Landmark Features by optimizing topology maintenance, redundancy, and specificity
Q90441632	EL_LSTM: Prediction of DNA-Binding Residue from Protein Sequence by Combining Long Short-Term Memory and Ensemble Learning
Q99546503	EMS3: An Improved Algorithm for Finding Edit-distance Based Motifs
Q47599864	EMatch: discovery of high resolution structural homologues of protein domains in intermediate resolution cryo-EM maps
Q50856478	ENISI SDE: A New Web-Based Tool for Modeling Stochastic Processes.
Q90655238	EPGA-SC : A framework for de novo assembly of single-cell sequencing reads
Q90078779	EPMDA:Edge perturbation based method for miRNA-disease association prediction
Q42696423	ERDS-exome: a Hybrid Approach for Copy Number Variant Detection from Whole-exome Sequencing Data
Q91373053	ERINS: Novel Sequence Insertion Detection by Constructing an Extended Reference
Q89496780	Early Diagnosis of Alzheimer's Disease Based on Resting-State Brain Networks and Deep Learning
Q47315571	Effect of Aggregation Operators on Network-Based Disease Gene Prioritization: A Case Study on Blood Disorders
Q46900243	Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication
Q50947132	Effective gene selection method with small sample sets using gradient-based and point injection techniques.
Q45948809	Effectively identifying compound-protein interactions by learning from positive and unlabeled examples.
Q89551378	Efficient Algorithms for Finding the Closest l-mers in Biological Data
Q46361305	Efficient Algorithms for Genomic Duplication Models.
Q39004647	Efficient Algorithms for Sequence Analysis with Entropic Profiles
Q39589848	Efficient Approach to Correct Read Alignment for Pseudogene Abundance Estimates
Q92412481	Efficient Classification of Hot Spots and Hub Protein Interfaces by Recursive Feature Elimination and Gradient Boosting
Q47715777	Efficient Constant-Time Complexity Algorithm for Stochastic Simulation of Large Reaction Networks
Q89497961	Efficient Detection of Communities in Biological Bipartite Networks
Q39687586	Efficient Drug-Pathway Association Analysis via Integrative Penalized Matrix Decomposition
Q46284695	Efficient Local Search for Euclidean Path-Difference Median Trees
Q89555388	Efficient Mining Multi-mers in a Variety of Biological Sequences
Q39005204	Efficient Quartet Representations of Trees and Applications to Supertree and Summary Methods
Q45755286	Efficient algorithms for knowledge-enhanced supertree and supermatrix phylogenetic problems
Q38359262	Efficient algorithms for the computational design of optimal tiling arrays
Q37479619	Efficient algorithms to explore conformation spaces of flexible protein loops
Q40448909	Efficient and Accurate OTU Clustering with GPU-Based Sequence Alignment and Dynamic Dendrogram Cutting.
Q39038399	Efficient and powerful method for combining p-values in Genome-wide Association Studies
Q30408596	Efficient approaches for retrieving protein tertiary structures
Q92962952	Efficient compression and indexing for highly repetitive DNA sequence collections
Q51929492	Efficient detection of network motifs.
Q33586073	Efficient extraction of protein-protein interactions from full-text articles
Q44856667	Efficient formulations for exact stochastic simulation of chemical systems
Q48002396	Efficient genotype elimination via adaptive allele consolidation.
Q84582877	Efficient localization of hot spots in proteins using a novel S-transform based filtering approach
Q42618766	Efficient maximal repeat finding using the burrows-wheeler transform and wavelet tree.
Q48083641	Efficient parameterized algorithms for biopolymer structure-sequence alignment
Q51722204	Efficient peak-labeling algorithms for whole-sample mass spectrometry proteomics.
Q89559047	Efficiently Detecting Protein Complexes from Protein Interaction Networks via Alternating Direction Method of Multipliers
Q101406851	Efficiently Predicting Hot Spots in PPIs by Combining Random Forest and Synthetic Minority Over-Sampling Technique
Q31067080	Efficiently mining gene expression data via a novel parameterless clustering method
Q51498164	Eigen-genomic system dynamic-pattern analysis (ESDA): modeling mRNA degradation and self-regulation.
Q89497969	Elucidating Genome-Wide Protein-RNA Interactions Using Differential Evolution
Q38660137	EmDL: Extracting miRNA-Drug Interactions from Literature.
Q38915875	Emerging Security Mechanisms for Medical Cyber Physical Systems
Q45373677	Empirical Investigations into Full-Text Protein Interaction Article Categorization Task (ACT) in the BioCreative II.5 Challenge
Q46717809	Empirical evidence of the applicability of functional clustering through gene expression classification
Q98200741	Empirical potential energy function toward ab initio folding G protein-coupled receptors
Q92067931	Enabling massive XML-based biological data management in HBase
Q31033858	Encoding Data Using Biological Principles: the Multisample Variant Format for Phylogenomics and Population Genomics.
Q51701951	Encoding molecular motions in voxel maps.
Q90939186	End-to-End Representation Learning for Chemical-Chemical Interaction Prediction
Q92074004	End-to-End Security for Local and Remote Human Genetic Data Applications at the EGA
Q91506969	Enhanced Diagnosis of Pneumothorax with an Improved Real-time Augmentation for Imbalanced Chest X-rays Data Based on DCNN
Q90155719	Enhanced Protein Structural Class Prediction using Effective Feature Modeling and Ensemble of Classifiers
Q89560183	Enhancement of Protein β-Sheet Topology Prediction Using Maximum Weight Disjoint Path Cover
Q30388147	Enhancing Protein Conformational Space Sampling Using Distance Profile-Guided Differential Evolution
Q57055874	Enhancing of Particle Swarm Optimization Based Method for Multiple Motifs Detection in DNA Sequences Collections
Q45952094	Enhancing the Prediction of Transmembrane β-Barrel Segments with Chain Learning and Feature Sparse Representation.
Q33704855	Ensemble learning with active example selection for imbalanced biomedical data classification
Q92336366	Ensembling of Gene Clusters utilizing Deep Learning and Protein-protein Interaction Information
Q47999235	Enumerating Substituted Benzene Isomers of Tree-Like Chemical Graphs
Q48009233	Environment Sensitivity-based Cooperative Co-evolutionary Algorithms for Dynamic Multi-objective Optimization
Q98200719	Epilepsy Signal Recognition Using Online Transfer TSK Fuzzy Classifier Underlying Classification Error and Joint Distribution Consensus Regularization
Q86102425	Erratum to "Protein Function Prediction Using Multilabel Ensemble Classification"
Q38785981	Essential Protein Detection by Random Walk on Weighted Protein-Protein Interaction Networks
Q51931011	Essential latent knowledge for protein-protein interactions: analysis by an unsupervised learning approach.
Q89557646	Estimating Energy Parameters for RNA Secondary Structure Predictions Using Both Experimental and Computational Data
Q89837348	Estimating Functional Connectivity by Integration of Inherent Brain Function Activity Pattern Priors
Q46243594	Estimating genome-wide gene networks using nonparametric Bayesian network models on massively parallel computers.
Q33744929	Estimating haplotype frequencies by combining data from large DNA pools with database information.
Q89558172	Estimation of the Spatial Chromatin Structure Based on a Multiresolution Bead-Chain Model
Q89497734	Estrogenic Active Stilbene Derivatives as Anti-Cancer Agents: A DFT and QSAR Study
Q30382091	Evaluating protein similarity from coarse structures.
Q100549051	Evaluation of Existing Methods for High-Order Epistasis Detection
Q46824193	Evaluation of breast cancer susceptibility using improved genetic algorithms to generate genotype SNP barcodes.
Q47860835	Evaluation of design strategies for time course experiments in genetic networks: case study of the XlnR regulon in Aspergillus niger
Q98200728	Evaluation of experimental protocols for shotgun whole-genome metagenomic discovery of antibiotic resistance genes
Q51779343	Evaluation of geometric complementarity between molecular surfaces using compactly supported radial basis functions.
Q51654562	EvoMD: an algorithm for evolutionary molecular design.
Q40555798	Evolution and Controllability of Cancer Networks: A Boolean Perspective
Q42618987	Evolution under reversals: parsimony and conservation of common intervals
Q38438663	Evolutionary Graph Clustering for Protein Complex Identification.
Q36480634	Evolutionary Model Selection and Parameter Estimation for Protein-Protein Interaction Network Based on Differential Evolution Algorithm
Q88536634	Evolutionary Model for the Statistical Divergence of Paralogous and Orthologous Gene Pairs Generated by Whole Genome Duplication and Speciation
Q40448898	Evolutionary Pressures on the Yeast Transcriptome.
Q45262790	Evolutionary optimization of kernel weights improves protein complex comembership prediction
Q89837351	Evolving Multiobjective Cancer Subtype Diagnosis from Cancer Gene Expression Data
Q89592968	Evolving Transcriptomic Profiles from Single-cell RNA-seq Data using Nature-Inspired Multiobjective Optimization
Q38722073	Exact Algorithms for Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees
Q86897665	Exact Identification of the Structure of a Probabilistic Boolean Network from Samples
Q51610620	Exact computation of coalescent likelihood for panmictic and subdivided populations under the infinite sites model.
Q52612078	Examining De Novo Transcriptome Assemblies via a Quality Assessment Pipeline.
Q51901934	Exemplar longest common subsequence.
Q37572528	Expanded explorations into the optimization of an energy function for protein design
Q50748977	Expectation Maximization of Frequent Patterns, a Specific, Local, Pattern-Based Biclustering Algorithm for Biological Datasets.
Q35869880	Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly.
Q44947078	Explicit expression for the steady-state translation rate in the infinite-dimensional homogeneous ribosome flow model
Q51463626	Exploiting intrastructure information for secondary structure prediction with multifaceted pipelines.
Q33993655	Exploiting the functional and taxonomic structure of genomic data by probabilistic topic modeling.
Q42467202	Exploratory consensus of hierarchical clusterings for melanoma and breast cancer
Q39062576	Exploring Consensus RNA Substructural Patterns using Subgraph Mining.
Q90939197	Exploring Frequented Regions in Pan-Genomic Graphs
Q92437943	Exploring Molecular Descriptors and Fingerprints to Predict mTOR Kinase Inhibitors using Machine Learning Techniques
Q34090329	Exploring species-based strategies for gene normalization.
Q40704219	Exploring the Genetic Patterns of Complex Diseases via the Integrative Genome-Wide Approach
Q89551366	Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny
Q51871998	Exploring the solution space of sorting by reversals, with experiments and an application to evolution.
Q40554191	Extended Graph-Based Models for Enhanced Similarity Search in Cavbase
Q53172431	Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models.
Q39642356	Extending the Applicability of Graphlets to Directed Networks.
Q51133229	Extending the algebraic formalism for genome rearrangements to include linear chromosomes.
Q90939398	Extension of Partial Gene Transcripts by Iterative Mapping of RNA-Seq Raw Reads
Q46719647	Extensions and improvements to the chordal graph approach to the multistate perfect phylogeny problem
Q38404006	Extracting Biomedical Event with Dual Decomposition Integrating Word Embeddings
Q91296613	Extracting Biomedical Events with Parallel Multi-Pooling Convolutional Neural Networks
Q87161618	Extracting Coevolutionary Features from Protein Sequences for Predicting Protein-Protein Interactions
Q38448968	Extracting Cross-Ontology Weighted Association Rules from Gene Ontology Annotations.
Q92353132	Extracting Inter-sentence Relations for Associating Biological Context with Events in Biomedical Text
Q42670143	Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System
Q31154251	Extracting dynamics from static cancer expression data
Q39186916	Extracting stage-specific and dynamic modules through analyzing multiple networks associated with cancer progression
Q48735620	Extraction of Blebs in Human Embryonic Stem Cell Videos.
Q35769560	Extraction of Individual Filaments from 2D Confocal Microscopy Images of Flat Cells
Q34680392	F2Dock: fast Fourier protein-protein docking
Q104747609	FBCwPlaid: A Functional Bi-clustering Analysis of Epi-transcriptome Profiling Data via a Weighted Plaid Model
Q51667422	FEAST: Sensitive Local Alignment with Multiple Rates of Evolution
Q50703221	FHAST: FPGA-Based Acceleration of Bowtie in Hardware.
Q92906725	FLR: A Revolutionary Alignment-Free Similarity Analysis Methodology for DNA-Sequences
Q51175238	FNphasing: a novel fast heuristic algorithm for haplotype phasing based on flow network model.
Q42643083	FRESCO: Referential compression of highly similar sequences
Q89765810	FUNMarker: Fusion network-based method to identify prognostic and heterogeneous breast cancer biomarkers
Q89557154	Fast Algorithms for Computing Path-Difference Distances
Q39687581	Fast Construction of Near Parsimonious Hybridization Networks for Multiple Phylogenetic Trees
Q51091236	Fast Entropic Profiler: An Information Theoretic Approach for the Discovery of Patterns in Genomes.
Q40448870	Fast Prediction of DNA Melting Bubbles Using DNA Thermodynamic Stability.
Q50674415	Fast Sampling-Based Whole-Genome Haplotype Block Recognition.
Q57280685	Fast Short Read De-novo Assembly Using Overlap-Layout-Consensus Approach
Q31160708	Fast and Scalable Feature Selection for Gene Expression Data Using Hilbert-Schmidt Independence Criterion
Q34708326	Fast and practical algorithms for planted (l, d) motif search
Q46085636	Fast computation of minimal cut sets in metabolic networks with a Berge algorithm that utilizes binary bit pattern trees
Q90720971	Fast de Bruijn Graph Compaction in Distributed Memory Environments
Q43897993	Fast exact algorithms for the closest string and substring problems with application to the planted (L, d)-motif model
Q33967798	Fast flexible modeling of RNA structure using internal coordinates.
Q51701148	Fast hinge detection algorithms for flexible protein structures.
Q84244221	Fast kernel discriminant analysis for classification of liver cancer mass spectra
Q48002383	Fast local search for unrooted Robinson-Foulds supertrees
Q33868842	Fast parallel Markov clustering in bioinformatics using massively parallel computing on GPU with CUDA and ELLPACK-R sparse format
Q45948462	Fast prediction of protein methylation sites using a sequence-based feature selection technique.
Q51638370	Fast surface-based travel depth estimation algorithm for macromolecule surface shape description.
Q47687261	FastEtch: A Fast Sketch-based Assembler for Genomes
Q58592030	Faster Exact Computation of rSPR Distance via Better Approximation
Q51929483	Faster algorithms for optimal multiple sequence alignment based on pairwise comparisons.
Q34158195	Faster mass spectrometry-based protein inference: junction trees are more efficient than sampling and marginalization by enumeration
Q31156091	Feature Selection for Optimized High-dimensional Biomedical Data using the Improved Shuffed Frog Leaping Algorithm
Q45963120	Feature selection for gene expression using model-based entropy.
Q90693978	Feed-forward and Feedback Control in Astrocytes for Ca2+-based Molecular Communications Nanonetworks
Q92005769	Few-shot Breast Cancer Metastases Classification via Unsupervised Cell Ranking
Q50938775	Filter Design with Adaptation to Time-Delay Parameters for Genetic Regulatory Networks.
Q50856377	Finding All Longest Common Segments in Protein Structures Efficiently.
Q50562207	Finding Patterns in Protein Sequences by Using a Hybrid Multiobjective Teaching Learning Based Optimization Algorithm.
Q90351662	Finding Possible Promoter Binding Sites in DNA Sequences by Sequential Patterns Mining with Specific Numbers of Gaps
Q50628432	Finding Robust Adaptation Gene Regulatory Networks Using Multi-Objective Genetic Algorithm.
Q51901928	Finding a common motif of RNA sequences using genetic programming: the GeRNAMo system.
Q51356109	Finding a periodic attractor of a Boolean network.
Q51930788	Finding consistent gene transmission patterns on large and complex pedigrees.
Q47405892	Finding significant matches of position weight matrices in linear time
Q82212582	Finding the nearest neighbors in biological databases using less distance computations
Q46038459	Fine-scale genetic mapping using independent component analysis.
Q90078787	Finite-Set Model Predictive Control of Melanoma Cancer Treatment Using Signaling Pathway Inhibitor of Cancer Stem Cell
Q53119437	Finite-Time Stability Analysis of Reaction-Diffusion Genetic Regulatory Networks with Time-Varying Delays.
Q47978335	Fireworks Algorithm with Enhanced Fireworks Interaction
Q51701146	Fixed-parameter tractability of the maximum agreement supertree problem.
Q89557249	Flexible Non-Negative Matrix Factorization to Unravel Disease-Related Genes
Q89802018	Floating search methodology for combining classification models for site recognition in DNA sequences
Q92695480	FlyIT: Drosophila Embryogenesis Image Annotation based on Image Tiling and Convolutional Neural Networks
Q36955429	FocusALL: Focal Stacking of Microscopic Images Using Modified Harris Corner Response Measure
Q30357470	Fold recognition by predicted alignment accuracy.
Q91897266	Foretelling the Phenotype of a Genomic Sequence
Q91270024	Formal Analysis of Network Motifs Links Structure to Function in Biological Programs
Q91720860	Formator: predicting lysine formylation sites based on the most distant undersampling and safe-level synthetic minority oversampling
Q46069653	Fourier transform inequalities for phylogenetic trees
Q50711086	Fractal Behavior of the Pancreatic β-Cell Near the Percolation Threshold: Effect of the KATP Channel On the Electrical Response.
Q38475474	From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks
Q30397825	From Optimization to Mapping: An Evolutionary Algorithm for Protein Energy Landscapes
Q39589855	From Protein Sequence to Protein Function via Multi-Label Linear Discriminant Analysis
Q51568203	From gene trees to species trees II: species tree inference by minimizing deep coalescence events.
Q45775645	Function annotation for pseudoknot using structure similarity
Q38836338	Functional Impact of Autophagy-Related Genes on the Homeostasis and Dynamics of Pancreatic Cancer Cell Lines
Q36331261	Functional Module Analysis for Gene Coexpression Networks with Network Integration
Q41832274	Functional census of mutation sequence spaces: the example of p53 cancer rescue mutants.
Q33744935	Fuzzy ARTMAP prediction of biological activities for potential HIV-1 protease inhibitors using a small molecular data set.
Q31003881	Fuzzy Logic as a Computational Tool for Quantitative Modelling of Biological Systems with Uncertain Kinetic Data.
Q48340480	Fuzzy intervention in biological phenomena.
Q38517556	Fuzzy measures on the Gene Ontology for gene product similarity.
Q39199124	Fuzzy-Rough Entropy Measure and Histogram Based Patient Selection for miRNA Ranking in Cancer
Q33437616	Fuzzy-adaptive-subspace-iteration-based two-way clustering of microarray data
Q111519999	G protein-coupled receptor interaction prediction based on deep transfer learning
Q92225795	G-DipC: An Improved Feature Representation Method for Short Sequences to Predict the Type of Cargo in Cell-Penetrating Peptides
Q40553614	GECC: Gene Expression Based Ensemble Classification of Colon Samples
Q30660542	GENESHIFT: a nonparametric approach for integrating microarray gene expression data based on the inner product as a distance measure between the distributions of genes
Q89555617	GLAlign: A Novel Algorithm for Local Network Alignment
Q40553545	GLProbs: Aligning Multiple Sequences Adaptively
Q34678625	GPD: a graph pattern diffusion kernel for accurate graph classification with applications in cheminformatics
Q98199647	GPU Accelerated Drug Application on Signaling Pathways containing Multiple Faults using Boolean Networks
Q48933425	GPU-based Point Cloud Superpositioning for Structural Comparisons of Protein Binding Sites.
Q50710034	GPUDePiCt: A Parallel Implementation of a Clustering Algorithm for Computing Degenerate Primers on Graphics Processing Units.
Q88616026	GSEH: A Novel Approach to Select Prostate Cancer-Associated Genes Using Gene Expression Heterogeneity
Q51511475	GSGS: a computational approach to reconstruct signaling pathway structures from gene sets.
Q90441653	GaMRed-Adaptive Filtering of High-Throughput Biological Data
Q112709579	GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies
Q89557147	GapReduce: a gap filling algorithm based on partitioned read sets
Q38443601	Gelsius: a literature-based workflow for determining quantitative associations between genes and biological processes
Q98200716	GenSeg and MR-GenSeg: A novel segmentation algorithm and its parallel MapReduce based approach for identifying genomic regions with copy number variations
Q90716144	GenSeq+: A Scalable High-Performance Accelerator for Genome Sequencing
Q52334147	Gender Identification of Human Brain Image with A Novel 3D Descriptor.
Q91270019	Gene Expressions, Hippocampal Volume Loss, and MMSE Scores in Computation of Progression and Pharmacologic Therapy Effects for Alzheimer's Disease
Q40555817	Gene Name Disambiguation Using Multi-Scope Species Detection
Q57055870	Gene Regulatory Relationship Mining Using Improved Three-Phase Dependency Analysis Approach
Q40553063	Gene Selection Integrated with Biological Knowledge for Plant Stress Response Using Neighborhood System and Rough Set Theory
Q40553606	Gene Selection Using Locality Sensitive Laplacian Score
Q38692879	Gene Tree Construction and Correction using SuperTree and Reconciliation
Q46671692	Gene Tree Diameter for Deep Coalescence
Q33568407	Gene association networks from microarray data using a regularized estimation of partial correlation based on PLS regression.
Q51853537	Gene classification using codon usage and support vector machines.
Q46327804	Gene classification using parameter-free semi-supervised manifold learning
Q42619359	Gene clustering via integrated Markov models combining individual and pairwise features
Q92497620	Gene expression classification of lung adenocarcinoma into molecular subtypes
Q33383177	Gene expression data analysis using a novel approach to biclustering combining discrete and continuous data
Q51117173	Gene mapping and marker clustering using Shannon's mutual information.
Q45245977	Gene regulation networks in early phase of Duchenne muscular dystrophy
Q31033854	Gene regulatory network inference from perturbed time-series expression data via ordered dynamical expansion of non-steady state actors
Q36390465	Gene selection using iterative feature elimination random forests for survival outcomes.
Q39990479	GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators
Q44404741	GeneOnEarth: fitting genetic PC plots on the globe.
Q48283284	Generalized gene adjacencies, graph bandwidth, and clusters in yeast evolution.
Q46887410	Generalized query-based active learning to identify differentially methylated regions in DNA.
Q91290285	Generation of Level- k LGT Networks
Q98200708	Generic Context-Aware Group Contributions
Q37808914	Genetic networks and soft computing
Q59031595	GenoPri'16: International Workshop on Genome Privacy and Security
Q38749000	Genome Rearrangement with ILP.
Q51930786	Genome rearrangement based on reversals that preserve conserved intervals.
Q90460092	Genome-Scale identification, in silico characterization and interaction study between Wheat SNARE and NPSN gene families involved in Vesicular Transport
Q50562264	Genome-Wide Protein Function Prediction through Multi-Instance Multi-Label Learning.
Q39990213	Genome-Wide Semi-Automated Annotation of Transporter Systems
Q33863233	Genome-guided transcriptome assembly in the age of next-generation sequencing
Q45946818	Genome-wide Analysis of MDR and XDR Tuberculosis from Belarus: Machine-learning Approach.
Q35007572	GenomeTools: a comprehensive software library for efficient processing of structured genome annotations
Q48638800	Genomic Distance with High Indel Costs.
Q30631768	Genomic region operation kit for flexible processing of deep sequencing data.
Q90982589	Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-optimal Solutions
Q38580024	Global Alignment of Protein-Protein Interaction Networks: A Survey
Q39038392	Global Biological Network Alignment by Using Efficient Memetic Algorithm
Q46671695	Global Network Alignment in the Context of Aging
Q50711073	Globally Asymptotic Stability Analysis for Genetic Regulatory Networks with Mixed Delays: An M-Matrix-Based Approach.
Q100498623	GraPhyC: Using Consensus to Infer Tumor Evolution
Q51915919	Gradient-based optimization of kernel-target alignment for sequence kernels applied to bacterial gene start detection.
Q93172258	GrantExtractor: Accurate Grant Support Information Extraction from Biomedical Fulltext based on Bi-LSTM-CRF
Q51613350	Graph comparison by log-odds score matrices with application to protein topology analysis.
Q98200710	Graph convolutional autoencoder and generative adversarial network-based method for predicting drug-target interactions
Q46615105	Graphical Representation and Similarity Analysis of Protein Sequences Based on Fractal Interpolation
Q51887300	Graphical models of residue coupling in protein families.
Q98200712	Group Sparse Joint Non-negative Matrix Factorization on Orthogonal Subspace for Multi-modal Imaging Genetics Data Analysis
Q47651843	Grouped Gene Selection of Cancer via Adaptive Sparse Group Lasso Based on Conditional Mutual Information.
Q30631749	Growing seed genes from time series data and thresholded Boolean networks with perturbation
Q48637553	Growth Signatures of Rosette Plants from Time-Lapse Video.
Q59678898	Guest Editor's Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 2
Q86800381	Guest Editorial for Special Section on BIBM 2013
Q45848235	Guest Editorial for Special Section on BIOKDD2013.
Q50625669	Guest Editorial for Special Section on the 10th International Conference on Intelligent Computing (ICIC).
Q58225359	Guest Editorial for Special Section on the 11th International Conference on Intelligent Computing (ICIC)
Q58225333	Guest Editorial for Special Section on the 12th International Conference on Intelligent Computing (ICIC)
Q54588270	Guest Editorial for the 13th Asia Pacific Bioinformatics Conference.
Q86800408	Guest Editorial for the 12th Asia Pacific Bioinformatics Conference
Q48911523	Guest Editorial for the 25th International Conference on Genome Informatics (GIW/ISCB-Asia 2014).
Q53097658	Guest Editorial for the International Conference on Genome Informatics (GIW 2013).
Q85343198	Guest Editorial: Application and development of bioinformatics
Q60244866	Guest Editorial: Introduction to the Special Section on Emerging Security Trends for Biomedical Computations, Devices, and Infrastructures
Q86800420	Guest Editorial: Pattern Recognition in Bioinformatics
Q86800348	Guest Editors Introduction to the Special Section on Software and Databases
Q59158357	Guest Editors Introduction to the Special Section on Bioinformatics Research and Applications
Q59678900	Guest Editors' Introduction to the Special Issue: Machine Learning for Bioinformatics-Part 1
Q60175396	Guest Editors' Introduction to the Special Section on Bioinformatics Research and Applications
Q82355182	Guest Editors' introduction to the special section on bioinformatics research and applications
Q124212524	Guest Editors’ Introduction to the Special Section on the 14th International Conference on Computational Methods in Systems Biology (CMSB 2016)
Q86800396	Guest Editors’ Introduction: Selected Papers from ACM-BCB 2013
Q44016368	Guest editorial for special section on BSB 2012.
Q43998180	Guest editorial: Advanced algorithms of bioinformatics
Q83381637	Guest editorial: Special focus on bioinformatics and systems biology
Q95405072	Guest editorial: bioinformatics and computational systems biology
Q51158785	Guest editors' Introduction to the special section on computational methods in systems biology.
Q47413116	Guest editors' introduction to the special section on bioinformatics research and applications
Q43469826	Guest editors' introduction to the special section on bioinformatics research and applications.
Q51303988	Guest editors' introduction to the special section on computational methods in systems biology.
Q51326702	Guest editors’ introduction to the special section on bioinformatics research and applications.
Q98200725	GuiltyTargets: Prioritization of Novel Therapeutic Targets with Deep Network Representation Learning
Q50466221	HEMEsPred: Structure-Based Ligand-Specific Heme Binding Residues Prediction by Using Fast-Adaptive Ensemble Learning Scheme.
Q40555769	HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model
Q47976541	HMMCAS: a web tool for the identification and domain annotations of Cas proteins.
Q51682327	Hadamard conjugation for the Kimura 3ST model: combinatorial proof using path sets.
Q46309551	Hamiltonian walks of phylogenetic treespaces
Q59678249	HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies
Q33670026	Haplotype inference constrained by plausible haplotype data
Q43905784	Haplotyping for disease association: a combinatorial approach.
Q89557466	Hardness of Covering Alignment: Phase Transition in Post-Sequence Genomics
Q38657946	Hardware Accelerator for the Multifractal Analysis of DNA Sequences
Q90362924	Hardware-Software Codesign based Accelerated and Reconfigurable Methodology for String Matching in Computational Bioinformatics Applications
Q38424375	Hash subgraph pairwise kernel for protein-protein interaction extraction
Q38686131	Heavy-Tailed Noise Suppression and Derivative Wavelet Scalogram for Detecting DNA Copy Number Aberrations
Q89558679	HetRCNA: a novel method to identify recurrent copy number alternations from heterogeneous tumor samples based on matrix decomposition framework
Q30992743	Heterogeneous Cloud Framework for Big Data Genome Sequencing.
Q38384528	Heterogeneous Compression of Large Collections of Evolutionary Trees
Q58118386	Heterogeneous Domain Adaptation for IHC Classification of Breast Cancer Subtypes
Q44009146	Heuristic Bayesian segmentation for discovery of coexpressed genes within genomic regions
Q43642492	Heuristic reusable dynamic programming: efficient updates of local sequence alignment
Q90655234	Heuristics for the Reversal and Transposition Distance Problem
Q91548138	Hidden Markov Modelling Reveals Neighborhood Dependence of Dnmt3a and 3b Activity
Q40555454	Hierarchical Probabilistic Interaction Modeling for Multiple Gene Expression Replicates
Q30714277	Hierarchical clustering of high-throughput expression data based on general dependences
Q51368575	Hierarchical motif vectors for prediction of functional sites in amino acid sequences using quasi-supervised learning.
Q102205248	Hierarchical structured Component Analysis for Microbiome Data Using Taxonomy Assignments
Q45950983	High Class-Imbalance in pre-miRNA Prediction: A Novel Approach Based on deepSOM.
Q31135002	High confidence rule mining for microarray analysis
Q83732793	High performance computational systems biology
Q51610282	High performance hybrid functional Petri net simulations of biological pathway models on CUDA.
Q89556115	High-Order Convolutional Neural Network Architecture for Predicting DNA-Protein Binding Sites
Q104285726	High-Throughput Screening and Quantum Mechanics for Identifying Potent Inhibitors against Mac1 Domain of SARS-CoV-2 Nsp3
Q92695089	High-risk Prediction of Cardiovascular Diseases via Attention-based Deep Neural Networks
Q89560717	High-scalable Collaborated Parallel Framework for Large-scale Molecular Dynamic Simulation on Tianhe-2 Supercomputer
Q30631778	High-throughput compression of FASTQ data with SeqDB.
Q51625910	High-throughput ligand screening via preclustering and evolved neural networks.
Q98200703	Higher-Order Proximity-based MiRNA-Disease Associations Prediction
Q36390603	Highly Accurate and Efficient Data-Driven Methods For Genotype Imputation
Q42654012	Highly scalable genotype phasing by entropy minimization.
Q46037528	Hilbert-Huang transform for analysis of heart rate variability in cardiac health.
Q47310294	How little do we actually know? On the size of gene regulatory networks
Q45258082	How many clusters: a validation index for arbitrary-shaped clusters.
Q91122526	Human Gait Recognition Based on Self-adaptive Hidden Markov Model
Q89497315	Human Pathway-Based Disease Network
Q82212588	Human-readable rule generator for integrating amino scid sequence information and stability of mutant proteins
Q40555449	Hybrid Ant Bee Algorithm for Fuzzy Expert System Based Sample Classification
Q30991366	Hybrid Framework Using Multiple-Filters and an Embedded Approach for an Efficient Selection and Classification of Microarray Data
Q30671282	Hybrid fuzzy cluster ensemble framework for tumor clustering from biomolecular data.
Q90367859	Hybrid machine learning models for predicting types of Human T-cell Lymphotropic Virus
Q51853547	Hybridization in nonbinary trees.
Q90920959	Hyppo-X: A Scalable Exploratory Framework for Analyzing Complex Phenomics Data
Q38457110	IAS: Interaction specific GO term associations for predicting protein-protein interaction networks
Q98901962	IBM Functional Genomics Platform, A Cloud-Based Platform for Studying Microbial Life at Scale
Q51613361	ICGA-PSO-ELM approach for accurate multiclass cancer classification resulting in reduced gene sets in which genes encoding secreted proteins are highly represented.
Q86800365	IEEE/ACM Transactions on Computational Biology and Bioinformatics. Editorial from the Editor-in-Chief
Q92822134	ILDMSF: Inferring Associations between Long non-coding RNA and Disease Based on Multi-similarity Fusion
Q86105200	ILP/SMT-Based Method for Design of Boolean Networks Based on Singleton Attractors
Q38860719	IPED2: Inheritance Path based Pedigree Reconstruction Algorithm for Complicated Pedigrees
Q47311219	ISEA: Iterative Seed-Extension Algorithm for De Novo Assembly Using Paired-End Information and Insert Size Distribution
Q48063320	Identifiability of two-tree mixtures for group-based models
Q89552255	Identification and Analysis of Key Residues in Protein-RNA Complexes
Q50763673	Identification and Functional Inference for Tumor-associated Long Non-coding RNA.
Q33744945	Identification and modeling of genes with diurnal oscillations from microarray time series data
Q45958091	Identification of DNA-binding and protein-binding proteins using enhanced graph wavelet features.
Q89561099	Identification of Differentially Expressed Genes to Establish New Biomarker for Cancer Prediction
Q101061383	Identification of Functional piRNAs Using a Convolutional Neural Network
Q40553601	Identification of Functionally Related Enzymes by Learning-to-Rank Methods
Q50795615	Identification of Gene Networks with Time Delayed Regulation Based on Temporal Expression Profiles.
Q40552974	Identification of Genomic Aberrations in Cancer Subclones from Heterogeneous Tumor Samples
Q45952098	Identification of Glucose-Binding Pockets in Human Serum Albumin Using Support Vector Machine and Molecular Dynamics Simulations.
Q89556277	Identification of Local Clusters of Mutation Hotspots in Cancer-Related Genes and Their Biological Relevance
Q58570064	Identification of Novel Scaffolds with Dual Role as Antiepileptic and Anti-Breast Cancer
Q40553508	Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure
Q30992799	Identification of Protein Complexes from Tandem Affinity Purification/Mass Spectrometry Data via Biased Random Walk
Q91828475	Identification of Short Exons Disunited by a Short Intron in Eukaryotic DNA Regions
Q33862293	Identification of differentially expressed genes for time-course microarray data based on modified RM ANOVA.
Q46140917	Identification of essential proteins based on edge clustering coefficient
Q44228447	Identification of full and partial class relevant genes.
Q58570049	Identification of minimum set of master regulatory genes in gene regulatory networks
Q45179073	Identification of protein coding regions using the modified Gabor-wavelet transform
Q47694547	Identification of protein complexes by using a spatial and temporal active protein interaction network
Q33530842	Identification of regulatory modules in time series gene expression data using a linear time biclustering algorithm
Q51575333	Identification of relevant properties for epitopes detection using a regression model.
Q90457483	Identify Consistent Cross-Modality Imaging Genetic Patterns via Discriminant Sparse Canonical Correlation Analysis
Q40141086	Identify Critical Genes in Development with Consistent H3K4me2 Patterns across Multiple Tissues
Q89559870	Identifying "Many-to-Many" Relationships between Gene-Expression Data and Drug-Response Data via Sparse Binary Matching
Q35877994	Identifying Activation Centers with Spatial Cox Point Processes Using fMRI Data.
Q40553501	Identifying Affinity Classes of Inorganic Materials Binding Sequences via a Graph-Based Model.
Q89556689	Identifying Candidate Genetic Associations with MRI-Derived AD-Related ROI via Tree-Guided Sparse Learning
Q31076729	Identifying Cell Populations in Flow Cytometry Data Using Phenotypic Signatures
Q40555804	Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields
Q50723165	Identifying Disease Associated miRNAs Based on Protein Domains.
Q40553057	Identifying Driver Nodes in the Human Signaling Network Using Structural Controllability Analysis
Q92523638	Identifying Drug Resistant miRNAs using Entropy Based Ranking
Q98200722	Identifying Gene Network Rewiring Based on Partial Correlation
Q91894349	Identifying Gene Network Rewiring Using Robust Differential Graphical Model with Multivariate t-Distribution
Q89557642	Identifying Gene Network Rewiring by Integrating Gene Expression and Gene Network Data
Q57184688	Identifying Key Genes of Liver Cancer by Networking of Multiple Data Sets
Q92040934	Identifying Microbe-Disease Association Based on a Novel Back-Propagation Neural Network Model
Q30992735	Identifying Non-Redundant Gene Markers from Microarray Data: A Multiobjective Variable Length PSO-Based Approach
Q38860757	Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding
Q31156095	Identifying Stages of Kidney Renal Cell Carcinoma by Combining Gene Expression and DNA Methylation Data
Q93367995	Identifying TF Binding Motifs from Partial Set of Target Genes and its Application to Regulatory Network Inference
Q46416311	Identifying bacterial essential genes based on a feature-integrated method
Q34210029	Identifying bacterial virulent proteins by fusing a set of classifiers based on variants of Chou's pseudo amino acid composition and on evolutionary information
Q47651855	Identifying condition-specific modules by clustering multiple networks
Q89556698	Identifying gene network rewiring by combining gene expression and gene mutation data
Q48002405	Identifying gene pathways associated with cancer characteristics via sparse statistical methods
Q98730376	Identifying gene signatures for cancer drug repositioning based on sample clustering
Q68691194	Identifying lncRNA and mRNA Co-expression Modules from Matched Expression Data in Ovarian Cancer
Q92040929	Identifying molecular biomarkers for diseases with machine learning based on integrative omics
Q33843158	Identifying relevant data for a biological database: handcrafted rules versus machine learning
Q53513261	Identifying sigma70 promoters with novel pseudo nucleotide composition.
Q43961450	Identifying spurious interactions and predicting missing interactions in the protein-protein interaction networks via a generative network model
Q51569575	Image-based surface matching algorithm oriented to structural biology.
Q91373198	Imbalance Data Processing Strategy for Protein Interaction Sites Prediction
Q90351676	Imbalanced Breast Cancer Classification Using Transfer Learning
Q100739554	Immuno-Informatics based Peptides: An Approach for Vaccine Development against Outer Membrane Proteins of Pseudomonas Genus
Q36331661	Immunological Approach for Full NURBS Reconstruction of Outline Curves from Noisy Data Points in Medical Imaging.
Q89406089	Impact of synaptic localization and subunit composition of ionotropic glutamate receptors on synaptic function: modeling and simulation studies
Q90441649	Implementation and Evaluation of an Algorithm for Cryptographically Private Principal Component Analysis on Genomic Data
Q39669858	Improve Biomedical Information Retrieval using Modified Learning to Rank Methods.
Q39856721	Improve Glioblastoma Multiforme Prognosis Prediction by Using Feature Selection and Multiple Kernel Learning
Q92068839	Improve the resolution and parallel performance of the three-dimensional refine algorithm in RELION using CUDA and MPI
Q92822083	Improved Adverse Drug Event Prediction Through Information Component Guided Pharmacological Network Model (IC-PNM)
Q51107668	Improved Exact Enumerative Algorithms for the Planted (l, d)-Motif Search Problem.
Q90460087	Improved Predicting of The Sequence Specificities of RNA Binding Proteins by Deep Learning
Q104747608	Improved Protein Decoy Selection via Non-Negative Matrix Factorization
Q51629703	Improved algorithms for finding gene teams and constructing gene team trees.
Q30430982	Improved algorithms for matching r-separated sets with applications to protein structure alignment.
Q51695151	Improved algorithms for parsing ESLTAGs: a grammatical model suitable for RNA pseudoknots.
Q40555764	Improved and Promising Identification of Human MicroRNAs by Incorporating a High-Quality Negative Set.
Q51807317	Improved approximation algorithms for reconstructing the history of tandem repeats.
Q51930815	Improved gapped alignment in BLAST.
Q51871994	Improved layout of phylogenetic networks.
Q44992309	Improved multiple sequence alignments using coupled pattern mining
Q51628871	Improved parameterized complexity of the maximum agreement subtree and maximum compatible tree problems.
Q47749785	Improving Alzheimeres Disease Classification by Combining Multiple Measures.
Q48001117	Improving Biochemical Named Entity Recognition Using PSO Classifier Selection and Bayesian Combination Methods
Q40553584	Improving Detection of Driver Genes: Power-Law Null Model of Copy Number Variation in Cancer
Q38404070	Improving Integration Effectiveness of ID Mapping Based Biological Record Linkage
Q45947862	Improving Recognition of Antimicrobial Peptides and Target Selectivity through Machine Learning and Genetic Programming.
Q36056481	Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate
Q50802254	Improving X!Tandem on peptide identification from mass spectrometry by self-boosted Percolator.
Q30402138	Improving a consensus approach for protein structure selection by removing redundancy.
Q90610716	Improving de novo Assembly Based on Read Classification
Q40360961	Improving identification of key players in aging via network de-noising and core inference
Q47321884	Improving protein-protein interaction pair ranking with an integrated global association score
Q37001854	Improving strand pairing prediction through exploring folding cooperativity
Q58616385	Improving the Inference of Co-occurrence Networks in the Bovine Rumen Microbiome
Q40555191	Improving the Robustness of Local Network Alignment: Design and Extensive Assessment of a Markov Clustering-Based Approach
Q51697194	Improving the computational efficiency of recursive cluster elimination for gene selection.
Q34284931	Improving the prediction of clinical outcomes from genomic data using multiresolution analysis
Q57066535	In Silico Design and Experimental Validation of Combination Therapy for Pancreatic Cancer
Q100445423	In Silico Laboratory Experiments using Statistical Model Checking: A new model of the Palytoxin-Induced Pump Channel as Case Study
Q102049145	In silico modeling of the induction of apoptosis by Cryptotanshinone in osteosarcoma cell lines
Q85635982	In silico search of DNA drugs targeting oncogenes
Q41047137	In-silico Studies Show Potent Inhibition of HIV-1 Reverse Transcriptase Activity by a Herbal Drug.
Q51124890	Inapproximability of (1,2)-exemplar distance.
Q44554672	Incomplete lineage sorting: consistent phylogeny estimation from multiple loci.
Q89857021	Incorporating Clinical, Chemical and Biological Information for Predicting Small Molecule-microRNA Associations based on Non-negative Matrix Factorization
Q39664139	Incorporating Nonlinear Relationships in Microarray Missing Value Imputation
Q90977571	Incorporating Prior Knowledge about Genetic Variants into the Analysis of Genetic Association Data: An Empirical Bayes Approach
Q33356474	Incorporating gene functions into regression analysis of DNA-protein binding data and gene expression data to construct transcriptional networks
Q91770756	Incorporating the Coevolving Information of Substrates in Predicting HIV-1 Protease Cleavage Sites
Q51128835	Incorporation of Biological Pathway Knowledge in the Construction of Priors for Optimal Bayesian Classification.
Q30402341	Incorporation of Solvent Effect into Multi-objective Evolutionary Algorithm for Improved Protein Structure Prediction
Q39004429	Index-Based Network Aligner of Protein-Protein Interaction Networks
Q40555442	Indexing Graphs for Path Queries with Applications in Genome Research.
Q35801585	Infer Metagenomic Abundance and Reveal Homologous Genomes Based on the Structure of Taxonomy Tree
Q89560434	Inference Attacks and Controls on Genotypes and Phenotypes for Individual Genomic Data
Q99211446	Inference of a Dynamic Aging-related Biological Subnetwork via Network Propagation
Q45341146	Inference of biological S-system using the separable estimation method and the genetic algorithm
Q30671285	Inference of gene regulatory networks with variable time delay from time-series microarray data
Q50873332	Inference of genetic regulatory networks with recurrent neural network models using particle swarm optimization.
Q93004757	Inference of model parameters using particle filter algorithm and Copula distributions
Q44189093	Inference of the genetic network regulating lateral root initiation in Arabidopsis thaliana
Q51779366	Inferential clustering approach for microarray experiments with replicated measurements.
Q50769926	Inferring Disease Associated Phosphorylation Sites via Random Walk on Multi-Layer Heterogeneous Network.
Q89556397	Inferring Large-Scale Gene Regulatory Networks Using a Randomized Algorithm Based on Singular Value Decomposition
Q40448890	Inferring Sequential Order of Somatic Mutations during Tumorgenesis based on Markov Chain Model.
Q62478086	Inferring Spatial Organization of Individual Topologically Associated Domains via Piecewise Helical Model
Q91242365	Inferring Synergistic Drug Combinations based on Symmetric Meta-Path in a Novel Heterogeneous Network
Q31003877	Inferring Time-Delayed Causal Gene Network Using Time-Series Expression Data
Q31135003	Inferring adaptive regulation thresholds and association rules from gene expression data through combinatorial optimization learning.
Q43604852	Inferring connectivity of genetic regulatory networks using information-theoretic criteria
Q37755928	Inferring contagion in regulatory networks.
Q57066531	Inferring disease-associated microRNAs in heterogeneous networks with node attributes
Q51901925	Inferring gene regulatory networks using differential evolution with local search heuristics.
Q43562727	Inferring gene regulatory networks via nonlinear state-space models and exploiting sparsity
Q46361189	Inferring gene-species assignments in the presence of horizontal gene transfer
Q31076734	Inferring microRNA-disease associations by random walk on a heterogeneous network with multiple data sources
Q51409889	Inferring the Functions of Proteins from the Interrelationships between Functional Categories.
Q51575336	Inferring the number of contributors to mixed DNA profiles.
Q31135939	Inferring unknown biological functions by integration of GO annotations and gene expression data.
Q89560713	Influence Networks Compared with Reaction Networks: Semantics, Expressivity and Attractors
Q38504413	Influence of prior knowledge in constraint-based learning of gene regulatory networks
Q47731141	Influence of secretion on airflow dynamics of mechanical ventilated respiratory system
Q51638354	Information-theoretic model of evolution over protein communication channel.
Q46432138	Informative SNPs selection based on two-locus and multilocus linkage disequilibrium: criteria of max-correlation and min-redundancy
Q51853534	Initializing partition-optimization algorithms.
Q51930799	Integer programming approaches to haplotype inference by pure parsimony.
Q33881798	Integrated analysis of gene expression and copy number data on gene shaving using independent component analysis
Q47961367	Integrating Imaging Genomic Data in the Quest for Biomarkers for Schizophrenia Disease
Q91296628	Integrating Language Model and Reading Control Gate in BLSTM-CRF for Biomedical Named Entity Recognition
Q91122537	Integrating Multi-Omic Data with Deep Subspace Fusion Clustering for Cancer Subtype Prediction
Q31156165	Integrating Multiple Data Sources for Combinatorial Marker Discovery: A Study in Tumorigenesis
Q47851960	Integrating Multiple Heterogeneous Networks for Novel LncRNA-disease Association Inference
Q33530836	Integrating data clustering and visualization for the analysis of 3D gene expression data
Q38394042	Integration and Querying of Genomic and Proteomic Semantic Annotations for Biomedical Knowledge Extraction
Q91099433	Integration of Multi-omics Data for Gene Regulatory Network Inference and Application to Breast Cancer
Q35142436	Integration of Network Biology and Imaging to Study Cancer Phenotypes and Responses
Q91572950	Integration of imaging (epi)genomics data for the study of schizophrenia using group sparse joint nonnegative matrix factorization
Q94584568	Integrative Biological Network Analysis to Identify Shared Genes in Metabolic Disorders
Q30992824	Integrative Data Analysis of Multi-Platform Cancer Data with a Multimodal Deep Learning Approach
Q40555836	Intelligent Consensus Modeling for Proline Cis-Trans Isomerization Prediction
Q33925302	Intensity-based skeletonization of CryoEM gray-scale images using a true segmentation-free algorithm.
Q45965381	Interactive semisupervised learning for microarray analysis.
Q39724857	Intervention in gene regulatory networks via phenotypically constrained control policies based on long-run behavior
Q90362934	Intra-cluster distance minimization in DNA methylation analysis using an advanced Tabu-based iterative k-medoids clustering algorithm (T-CLUST)
Q58610372	Introducing Heuristic Information into Ant Colony Optimization Algorithm for Identifying Epistasis
Q39134950	Introducing a Stable Bootstrap Validation Framework for Reliable Genomic Signature Extraction
Q90693972	Inverse Projection Representation and Category Contribution Rate for Robust Tumor Recognition
Q38377626	Investigating Correlation between Protein Sequence Similarity and Semantic Similarity Using Gene Ontology Annotations.
Q104059035	Investigating Deep Learning based Breast Cancer Subtyping using Pan-cancer and Multi-omic Data
Q36925740	Investigating the efficacy of nonlinear dimensionality reduction schemes in classifying gene and protein expression studies
Q30580644	Investigating topic models' capabilities in expression microarray data classification.
Q51659346	Is there an optimal substitution matrix for contact prediction with correlated mutations?
Q39004716	IsAProteinDB: An Indexed Database of Trypsinized Proteins for Fast Peptide Mass Fingerprinting
Q42601042	Islands of tractability for parsimony haplotyping.
Q89559745	IsoTree: A New Framework for De novo Transcriptome Assembly from RNA-seq Reads
Q30357464	Isolating influential regions of electrostatic focusing in protein and DNA structure.
Q33902014	Iterative dictionary construction for compression of large DNA data sets
Q98200731	JUPPI: A multi-level feature based method for PPI prediction and a refined strategy for performance assessment
Q51118305	Joint classification and pairing of human chromosomes.
Q31067702	Jointly analyzing gene expression and copy number data in breast cancer using data reduction models
Q91122518	Jointly integrating VCF-based variants and OWL-based biomedical ontologies in MongoDB
Q38433293	KATZLGO: Large-scale Prediction of LncRNA Functions by Using the KATZ Measure Based on Multiple Networks
Q42696360	Kmerind: A Flexible Parallel Library for K-mer Indexing of Biological Sequences on Distributed Memory Systems
Q45328066	Knowledge Discovery Using Big Data in Biomedical Systems
Q91439015	Knowledge-Powered Deep Breast Tumor Classification with Multiple Medical Reports
Q50756510	Kriging-Based Parameter Estimation Algorithm for Metabolic Networks Combined with Single-Dimensional Optimization and Dynamic Coordinate Perturbation.
Q30580645	KungFQ: a simple and powerful approach to compress fastq files
Q98880615	LDA-LNSUBRW: lncRNA-disease association prediction based on linear neighborhood similarity and unbalanced bi-random walk
Q91278893	LDAH2V: Exploring meta-paths across multiple networks for lncRNA-disease association prediction
Q101126403	LDICDL: LncRNA-disease association identification based on Collaborative Deep Learning
Q40207777	LGH: A Fast and Accurate Algorithm for Single Individual Haplotyping Based on a Two-Locus Linkage Graph
Q38846153	LMMO: A Large Margin Approach for Refining Regulatory Motifs
Q42646317	LNA: fast protein structural comparison using a Laplacian characterization of tertiary structure
Q90610700	LPGNMF: Predicting Long Non-Coding RNA and Protein Interaction Using Graph Regularized Nonnegative Matrix Factorization
Q92073993	LSTM-Based End-to-End Framework for Biomedical Event Extraction
Q93070845	LWPCMF: Logistic Weighted Profile-based Collaborative Matrix Factorization for Predicting MiRNA-Disease Associations
Q51779361	Laplacian linear discriminant analysis approach to unsupervised feature selection.
Q52911179	Large Scale Tissue Morphogenesis Simulation on Heterogenous Systems Based on a Flexible Biomechanical Cell Model.
Q43550368	Large-scale signaling network reconstruction
Q40554217	LateBiclustering: Efficient Heuristic Algorithm for Time-Lagged Bicluster Identification.
Q35683000	Latent Feature Decompositions for Integrative Analysis of Multi-Platform Genomic Data
Q91653817	Learning Multimodal Networks from Heterogeneous Data for Prediction of lncRNA-miRNA Interactions
Q47656788	Learning Parameter-Advising Sets for Multiple Sequence Alignment
Q120077352	Learning Prognostic Models Using Disease Progression Patterns: Predicting the Need for Non-Invasive Ventilation in Amyotrophic Lateral Sclerosis
Q89765807	Learning Representation of Molecules in Association Network for Predicting Intermolecular Associations
Q98507769	Learning Transferable Driven and Drone Assisted Sustainable and Robust Regional Disease Surveillance for Smart Healthcare
Q50438605	Learning a structural and functional representation for gene expressions: To systematically dissect complex cancer phenotypes.
Q33744950	Learning genetic regulatory network connectivity from time series data
Q46464125	Learning scoring schemes for sequence alignment from partial examples
Q38435669	Learning the topological properties of brain tumors
Q89559562	Learning to Refine Expansion Terms for Biomedical Information Retrieval using Semantic Resources
Q99718861	Learning useful representations of DNA sequences from ChIP-seq datasets for exploring transcription factor binding specificities
Q90155705	Lesion Segmentation in Ultrasound Using Semi-pixel-wise Cycle Generative Adversarial Nets
Q39938668	Leveraging FPGAs for Accelerating Short Read Alignment
Q51091226	Ligand-K* Sequence Elimination: A Novel Algorithm for Ensemble-Based Redesign of Receptor-Ligand Binding.
Q100310460	Linear Time Reconciliation with Bounded Transfers of Genes
Q33568419	Linear separability of gene expression data sets
Q47656642	Linear time algorithms to construct populations fitting multiple constraint distributions at genomic scales
Q51638314	Linear-time algorithms for the multiple gene duplication problems.
Q51128828	Local Exact Pattern Matching for Non-Fixed RNA Structures.
Q100549054	Local R-Symmetry Co-Occurrence: Characterising Leaf Image Patterns for Identifying Cultivars
Q91035316	Local Similarity Matrix for Cysteine Disulfide Connectivity Prediction from Protein Sequences
Q89553743	Local Traces: An Over-Approximation of the Behavior of the Proteins in Rule-Based Models
Q38733171	Local-Nearest-Neighbors-Based Feature Weighting for Gene Selection
Q40553643	Logistic Principal Component Analysis for Rare Variants in Gene-Environment Interaction Analysis
Q92209444	Lossy Compression of Quality Values in Sequencing Data
Q89555953	Low Rank Subspace Clustering via Discrete Constraint and Hypergraph Regularization for Tumor Molecular Pattern Discovery
Q91196505	Low-Rank Joint Subspace Construction for Cancer Subtype Discovery
Q91795453	MCHMDA: Predicting microbe-disease associations based on similarities and low-rank matrix completion
Q93123089	MCNF: A novel method for cancer subtyping by integrating multi-omics and clinical data
Q101126404	MD-MLI: Prediction of miRNA-lncRNA Interaction by Using Multiple Features and Hierarchical Deep Learning
Q53592911	MDTE DB: a database for microRNAs derived from Transposable element.
Q58596970	MEC: Misassembly Error Correction in contigs based on distribution of paired-end reads and statistics of GC-contents
Q98200709	META-BASE: a Novel Architecture for Large-Scale Genomic Metadata Integration
Q92630787	MGRFE: multilayer recursive feature elimination based on an embedded genetic algorithm for cancer classification
Q38765629	MGT-SM: A Method for Constructing Cellular Signal Transduction Networks.
Q89837342	MHRWR: Prediction of lncRNA-disease associations based on multiple heterogeneous networks
Q92822149	MILAMP: Multiple Instance Prediction of Amyloid Proteins
Q89557441	MIMOSA: Algorithms for Microbial Profiling
Q40704210	MINT: Mutual Information Based Transductive Feature Selection for Genetic Trait Prediction
Q98199646	MISSIM: An incremental learning-based model with applications to the prediction of miRNA-disease association
Q48602128	ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology.
Q36872256	MMBIRFinder: A Tool to Detect Microhomology-Mediated Break-Induced Replication
Q47334666	MORE: mixed optimization for reverse engineering--an application to modeling biological networks response via sparse systems of nonlinear differential equations.
Q91770729	MPGM: Scalable and Accurate Multiple Network Alignment
Q50063933	MPIGeneNet: Parallel Calculation of Gene Co-Expression Networks on Multicore Clusters.
Q50856580	MRFy: Remote Homology Detection for Beta-Structural Proteins Using Markov Random Fields and Stochastic Search.
Q92437934	MRI Based Radiomics Approach with Deep Learning for Prediction of Vessel Invasion in Early-Stage Cervical Cancer
Q39018247	Machine Learned Replacement of N-Labels for Basecalled Sequences in DNA Barcoding
Q93101366	Machine Learning to Support the Presentation of Complex Pathway Graphs
Q89556385	Machine Vision System for 3D Plant Phenotyping
Q45963373	Machine learning techniques for the automated classification of adhesin-like proteins in the human protozoan parasite Trypanosoma cruzi.
Q93178190	Manipulating extracellular matrix organizations and parameters to control local cancer invasion
Q51697172	Manipulating the steady state of metabolic pathways.
Q51118301	Markov encoding for detecting signals in genomic sequences.
Q43889783	Markov invariants for phylogenetic rate matrices derived from embedded submodels
Q51595226	Matching split distance for unrooted binary phylogenetic trees.
Q51212931	Mathematical properties of the deep coalescence cost.
Q46954602	Maximizing Deep Coalescence Cost
Q50856604	Maximizing Protein Translation Rate in the Ribosome Flow Model: The Homogeneous Case.
Q40554837	Maximum Likelihood Estimation of GEVD: Applications in Bioinformatics
Q51124883	Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins.
Q83264786	Maximum parsimony for tree mixtures
Q51930680	Maximum-scoring segment sets.
Q52612076	MeTDiff: A Novel Differential RNA Methylation Analysis for MeRIP-Seq Data.
Q38431270	Measure the Semantic Similarity of GO Terms Using Aggregate Information Content
Q89555466	Measuring Boundedness for Protein Complex Identification in PPI Networks
Q35979814	Measuring Cluster Stability in a Large Scale Phylogenetic Analysis of Functional Genes in Metagenomes Using pplacer
Q56395504	MedCo: Enabling Secure and Privacy-Preserving Exploration of Distributed Clinical and Genomic Data
Q38458268	Mem-mEN: Predicting Multi-Functional Types of Membrane Proteins by Interpretable Elastic Nets.
Q45801925	Memory efficient algorithms for structural alignment of RNAs with pseudoknots
Q40555434	Merging Partially Labelled Trees: Hardness and a Declarative Programming Solution
Q89497972	Meta-Path Methods for Prioritizing Candidate Disease miRNAs
Q47999586	Metabolic Flux Analysis in Isotope Labeling Experiments Using the Adjoint Approach
Q51072324	Metabolic flux estimation--a self-adaptive evolutionary algorithm with singular value decomposition.
Q43650994	Metasample-based sparse representation for tumor classification.
Q37850639	Methods for identifying SNP interactions: a review on variations of Logic Regression, Random Forest and Bayesian logistic regression
Q51853546	Metrics for phylogenetic networks I: generalizations of the Robinson-Foulds metric.
Q44665301	Metrics for phylogenetic networks II: nodal and triplets metrics
Q51629691	Metrics on multilabeled trees: interrelationships and diameter bounds.
Q39038396	MiRTDL: a deep learning approach for miRNA target prediction
Q93101371	MicroRNA based feedforward control of intrinsic gene expression noise
Q89560438	Microarray Missing Value Imputation: A Regularized Local Learning Method
Q45765941	Microarray time course experiments: finding profiles
Q57306940	Microarray-Based quality assessment as a supporting criterion for de novo transcriptome assembly selection
Q36331656	Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization
Q51568222	MinePhos: a literature mining system for protein phoshphorylation information extraction.
Q43560851	Minimum-flip supertrees: complexity and algorithms
Q40554181	Mining Conditional Phosphorylation Motifs
Q40360966	Mining Contiguous Sequential Generators in Biological Sequences
Q30992591	Mining Gene Expression Data Focusing Cancer Therapeutics: A Digest.
Q40207727	Mining Gene Regulatory Networks by Neural Modeling of Expression Time-Series
Q92368829	Mining Relationships among Multiple Entities in Biological Networks
Q103812228	Mining Similar Aspects for Gene Similarity Explanation Based on Gene Information Network
Q44138286	Mining featured patterns of MiRNA interaction based on sequence and structure similarity
Q34736476	Mining minimal motif pair sets maximally covering interactions in a protein-protein interaction network
Q42277922	Mining quasi-bicliques from HIV-1-human protein interaction network: a multiobjective biclustering approach
Q39687535	Mining the Enriched Subgraphs for Specific Vertices in a Biological Graph.
Q60029807	Mixed Integer Linear Programming for Maximum-Parsimony Phylogeny Inference
Q40207688	Model Order and Identifiability of Non-Linear Biological Systems in Stable Oscillation.
Q37171246	Model composition for macromolecular regulatory networks
Q51807308	Model reduction of multiscale chemical langevin equations: a numerical case study.
Q51638347	Model reduction using piecewise-linear approximations preserves dynamic properties of the carbon starvation response in Escherichia coli.
Q92864379	Modeling Cell Communication with Time-Dependent Signaling Hypergraphs
Q39589871	Modeling Healthcare Quality via Compact Representations of Electronic Health Records
Q38691329	Modeling Methylation Patterns with Long Read Sequencing Data.
Q92353135	Modeling Variability in Populations of Cells using Approximated Multivariate Distributions
Q87788698	Modeling and Identification of Amnioserosa Cell Mechanical Behavior by Using Mass-Spring Lattices
Q44574967	Modeling and visualizing uncertainty in gene expression clusters using dirichlet process mixtures
Q43669491	Modeling associated protein-DNA pattern discovery with unified scores
Q46075173	Modeling protein interacting groups by quasi-bicliques: complexity, algorithm, and application
Q52612081	Modeling the Geometry and Dynamics of the Endoplasmic Reticulum Network.
Q89557452	Modelling Microbial Fuel Cells Using Lattice Boltzmann Methods
Q59885631	Modelling and Control of Gene Regulatory Networks for Perturbation Mitigation
Q90720965	Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics
Q91035319	Modified Half-System based Method for Reverse Engineering of Gene Regulatory Networks
Q55043296	Molecular Modeling and Evaluation of Novel Dibenzopyrrole Derivatives as Telomerase Inhibitors and Potential Drug for Cancer Therapy.
Q115701643	Molecular Simulations and Markov State Modeling Reveal Inactive Form of Quorum Sensing Regulator SdiA of Escherichia Coli
Q36420124	Molecular dynamics trajectory compression with a coarse-grained model
Q46130354	Molecular function prediction using neighborhood features
Q43459732	Molecular pattern discovery based on penalized matrix decomposition
Q89497320	Moment-Based Parameter Estimation for Stochastic Reaction Networks in Equilibrium
Q48425357	Motif search in graphs: application to metabolic networks.
Q40360947	MrBayes tgMC(3)++: A High Performance and Resource-Efficient GPU-Oriented Phylogenetic Analysis Method
Q39589879	Multi-Block Bipartite Graph for Integrative Genomic Analysis
Q89557937	Multi-Factored Gene-Gene Proximity Measures Exploiting Biological Knowledge Extracted from Gene Ontology: Application in Gene Clustering
Q35768245	Multi-Objective Particle Swarm Optimization Approach for Cost-Based Feature Selection in Classification
Q99603487	Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites
Q92336360	Multi-Site Meta-Analysis of Morphometry
Q90846685	Multi-Task Sparse Canonical Correlation Analysis with Application to Multi-Modal Brain Imaging Genetics
Q40379579	Multi-View Clustering of Microbiome Samples by Robust Similarity Network Fusion and Spectral Clustering
Q89504030	Multi-View Mammographic Density Classification by Dilated and Attention-Guided Residual Learning
Q47277127	Multi-category classification using an Extreme Learning Machine for microarray gene expression cancer diagnosis
Q89559861	Multi-domain Networks Association for Biological Data Using Block Signed Graph Clustering
Q90351657	Multi-label Classification Scheme Based on Local Regression for Retinal Vessel Segmentation
Q98614429	Multi-modal classification for human breast cancer prognosis prediction: Proposal of deep-learning based stacked ensemble model
Q111519997	Multi-modality Fusion & Inductive Knowledge Transfer Underlying Non-Sparse Multi-Kernel Learning and Distribution Adaption
Q92040923	Multi-neighborhood Learning for Global Alignment in Biological Networks
Q94583468	Multi-objective Simulated Annealing Variants to Infer Gene Regulatory Network: A Comparative Study
Q90610723	MultiMotifMaker: A Multi-Thread Tool for Identifying DNA Methylation Motifs from Pacbio Reads
Q31097603	Multiclass cancer classification using semisupervised ellipsoid ARTMAP and particle swarm optimization with gene expression data
Q51212918	Multiclass gene selection using Pareto-fronts.
Q33678651	Multiclass kernel-imbedded Gaussian processes for microarray data analysis
Q82874609	Multidimensional profiling of cell surface proteins and nuclear markers
Q43476343	Multilabel learning via random label selection for protein subcellular multilocations prediction
Q53154565	Multilevel computational modeling and quantitative analysis of bone remodeling.
Q38382085	Multimodal networks: structure and operations
Q45394708	Multiobjective identification of controlling areas in neuronal networks
Q51697177	Multiobjective optimization based-approach for discovering novel cancer therapies.
Q34624817	Multiobjective optimization in bioinformatics and computational biology
Q51336340	Multiparameter spectral representation of noise-induced competence in Bacillus subtilis.
Q35769556	Multiple 3D RNA Structure Superposition Using Neighbor Joining
Q30992802	Multiple Break-Points Detection in Array CGH Data via the Cross-Entropy Method
Q92746411	Multiple Optimal Reconciliations under the Duplication-Loss-Coalescence Model
Q40555758	Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization
Q51915914	Multiple graph alignment for the structural analysis of protein active sites.
Q38614435	Multiple network alignment via multiMAGNA+.
Q31067723	Multiple peak alignment in sequential data analysis: a scale-space-based approach
Q46113717	Multiple sequence assembly from reads alignable to a common reference genome
Q38846150	Multiple-Swarm Ensembles: Improving the Predictive Power and Robustness of Predictive Models and Its Use in Computational Biology
Q30631788	Multisample aCGH data analysis via total variation and spectral regularization.
Q33862305	Multiscale binarization of gene expression data for reconstructing Boolean networks.
Q34261286	Multiscale denoising of biological data: a comparative analysis
Q47321873	Multiscale modeling and analysis of planar cell polarity in the Drosophila wing
Q51931014	Multiseed lossless filtration.
Q51697186	Multistage gene normalization and SVM-based ranking for protein interactor extraction in full-text articles.
Q38887036	Multitask Protein Function Prediction Through Task Dissimilarity
Q42658292	Multitask learning for protein subcellular location prediction
Q37172268	Multivariate hypergeometric similarity measure
Q38860772	Muscle Tissue Labeling of Human Lower Limb in Multi-Channel mDixon MR Imaging: Concepts and Applications
Q34158199	Mutagenic primer design for mismatch PCR-RFLP SNP genotyping using a genetic algorithm
Q34057135	Mutation region detection for closely related individuals without a known pedigree using high-density genotype data.
Q47667267	Mutli-features Predction of Protein Translational Modification Sites.
Q33881800	Mutual information optimization for mass spectra data alignment
Q30402338	NAHAL-Flex: A Numerical and Alphabetical Hinge Detection Algorithm for Flexible Protein Structure Alignment.
Q38691327	NGS-FC: A Next-Generation Sequencing Data Format Converter
Q100508720	NIMCE: a gene regulatory network inference approach based on multi time delays causal entropy
Q90610706	NMFGO: Gene Function Prediction via Nonnegative Matrix Factorization with Gene Ontology
Q93389941	NTSHMDA: Prediction of Human Microbe-Disease Association based on Random Walk by Integrating Network Topological Similarity
Q89559893	Natural Language Processing for EHR-Based Computational Phenotyping
Q33331320	Nature reserve selection problem: a tight approximation algorithm
Q89559885	Nature-Inspired Multiobjective Epistasis Elucidation from Genome-Wide Association Studies
Q43719481	Naïve Bayesian classifiers with multinomial models for rRNA taxonomic assignment
Q92962940	NegStacking: drug-target interaction prediction based on ensemble learning and logistic regression
Q94511796	Netboost: Boosting-supported Network Analysis Improves High-Dimensional Omics Prediction in Acute Myeloid Leukemia and Huntington's Disease
Q98200732	Network Classification based on Reducibility with respect to the Stability of Canalizing Power of Genes in a Gene Regulatory Network - a Boolean Network Modeling Perspective
Q39089023	Network Community Detection based on the Physarum-inspired Computational Framework
Q38599908	Network clustering analysis using mixture exponential-family random graph models and its application in genetic interaction data
Q40554232	Network-Based Drug-Target Interaction Prediction with Probabilistic Soft Logic
Q31049184	Network-Based Method for Inferring Cancer Progression at the Pathway Level from Cross-Sectional Mutation Data.
Q40553638	Network-Based Methods to Identify Highly Discriminating Subsets of Biomarkers
Q114085191	Network-based Structural Learning Nonnegative Matrix Factorization Algorithm for Clustering of scRNA-seq Data
Q50697014	Network-based drug ranking and repositioning with respect to DrugBank therapeutic categories.
Q33437613	Network-based inference of cancer progression from microarray data
Q39005201	Network-regularized Sparse Logistic Regression Models for Clinical Risk Prediction and Biomarker Discovery.
Q104285728	Neural Network and Random Forest Models in Protein Function Prediction
Q48089083	Neuroinformatics for genome-wide 3D gene expression mapping in the mouse brain
Q89497041	New Deep Learning Methods for Protein Loop Modeling
Q102384917	New Genome Sequence Detection via Natural Vector Convex Hull Method
Q51929488	New bounds and tractable instances for the transposition distance.
Q51638343	New methods for inference of local tree topologies with recombinant SNP sequences in populations.
Q38373661	NewGOA: predicting new GO annotations of proteins by bi-random walks on a hybrid graph
Q30992609	Noise Resistant Generalized Parametric Validity Index of Clustering for Gene Expression Data
Q51775819	Nonbinary Tree-Based Phylogenetic Networks.
Q47998766	Nonconvex Penalty Based Low-Rank Representation and Sparse Regression for eQTL Mapping
Q46140036	Noniterative convex optimization methods for network component analysis.
Q51675139	Nonnegative Principal Component Analysis for Cancer Molecular Pattern Discovery
Q30660545	Nonnegative least-squares methods for the classification of high-dimensional biological data
Q51127044	Nonoverlapping clone pooling for high-throughput sequencing.
Q40553592	Nonparametric Tikhonov Regularized NMF and Its Application in Cancer Clustering
Q36921096	Nonparametric clustering for studying RNA conformations
Q47821247	Normalized feature vectors: a novel alignment-free sequence comparison method based on the numbers of adjacent amino acids.
Q48000016	Normalizing Kernels in the Billera-Holmes-Vogtmann Treespace.
Q47836944	Novel Consensus Gene Selection Criteria for Distributed GPU Partial Least Squares-based Gene Microarray Analysis in Diffused Large B Cell Lymphoma (DLBCL) and related findings
Q50608436	Novel Methods for Microglia Segmentation, Feature Extraction, and Classification.
Q31145283	Novel algorithm for coexpression detection in time-varying microarray data sets
Q37315891	Novel multisample scheme for inferring phylogenetic markers from whole genome tumor profiles
Q30393355	Novel nonlinear knowledge-based mean force potentials based on machine learning
Q91331994	Novel regularization method for biomarker selection and cancer classification
Q101126405	Novel transformer networks for improved sequence labeling in genomics
Q38434387	Novelty Indicator for Enhanced Prioritization of Predicted Gene Ontology Annotations
Q38860763	NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra
Q86299696	Nucleosome Positioning of Intronless Genes in the Human Genome
Q92630776	Object weighting: a new clustering approach to deal with outliers and cluster overlap in computational biology
Q90078777	Oligo Design with Single Primer Binding Site for High Capacity DNA-Based Data Storage
Q38901473	Omics Informatics: From Scattered Individual Software Tools to Integrated Workflow Management Systems
Q104266276	On Attractor Detection and Optimal Control of Deterministic Generalized Asynchronous Random Boolean Networks
Q90176979	On Axon Interaction and Its Role in Neurological Networks
Q31032903	On Efficient Feature Ranking Methods for High-Throughput Data Analysis
Q51779356	On Nakhleh's metric for reduced phylogenetic networks.
Q47615983	On Representing Protein Folding Patterns Using Non-Linear Parametric Curves
Q90033043	On Sharing Intentions, and Personal and Interdependent Privacy Considerations for Genetic Data: A Vignette Study
Q30408593	On complexity of protein structure alignment problem under distance constraint
Q30400221	On lattice protein structure prediction revisited
Q98200721	On monomeric and multimeric structures-based protein-ligand interactions
Q51545212	On parameter synthesis by parallel model checking.
Q44330643	On position-specific scoring matrix for protein function prediction
Q51807305	On subset seeds for protein alignment.
Q46436812	On the Complexity of Duplication-Transfer-Loss Reconciliation with Non-Binary Gene Trees
Q46671696	On the Number of Ranked Species Trees Producing Anomalous Ranked Gene Trees.
Q56798158	On the Steady-State Distribution in the Homogeneous Ribosome Flow Model
Q91770714	On the Unreported-Profile-is-Negative Assumption for Predictive Cheminformatics
Q40113228	On the Variable Ordering in Subgraph Isomorphism Algorithms.
Q39637371	On the application of active learning and Gaussian processes in postcryopreservation cell membrane integrity experiments
Q51779347	On the approximation of optimal structures for RNA-RNA interaction.
Q51613359	On the characterization and selection of diverse conformational ensembles with applications to flexible docking.
Q51014132	On the classification of a small imbalanced cytogenetic image database.
Q51675133	On the complexity of uSPR distance.
Q51629694	On the distribution of the number of cycles in the breakpoint graph of a random signed permutation.
Q46505265	On the elusiveness of clusters
Q51362786	On the hardness of counting and sampling center strings.
Q37691162	On the importance of comprehensible classification models for protein function prediction
Q30660547	On the increase in network robustness and decrease in network response ability during the aging process: a systems biology approach via microarray data
Q51923564	On the length of the longest exact position match in a random sequence.
Q43493416	On the neighborhoods of trees.
Q50776911	Online Estimation Method for Respiratory Parameters Based on a Pneumatic Model.
Q51675154	OntoGene in BioCreative II.5.
Q38394038	Ontology-Based Prediction and Prioritization of Gene Functional Annotations.
Q38400824	Ontology-Based Search of Genomic Metadata
Q43462058	Operon prediction using chaos embedded particle swarm optimization
Q90441643	Optimal Bayesian Filtering for Biomarker Discovery: Performance and Robustness
Q92630981	Optimal Bayesian Transfer Learning for Count Data
Q38823293	Optimal Block-Based Trimming for Next Generation Sequencing.
Q86105606	Optimal Experimental Design for Gene Regulatory Networks in the Presence of Uncertainty
Q88248304	Optimal Fault Detection and Diagnosis in Transcriptional Circuits Using Next-Generation Sequencing
Q33362593	Optimal Landmark Selection for Registration of 4D Confocal Image Stacks in Arabidopsis
Q88232455	Optimal Objective-Based Experimental Design for Uncertain Dynamical Gene Networks with Experimental Error
Q51834743	Optimal aggregation of binary classifiers for multiclass cancer diagnosis using gene expression profiles.
Q43769988	Optimal algorithms for the interval location problem with range constraints on length and average
Q98200739	Optimal robust search for parameter values of qualitative models of gene regulatory networks
Q89802008	Optimising Boolean Synthetic Regulatory Networks to Control Cell States
Q38846156	Optimization of Gene Set Annotations using Robust Trace-Norm Multitask Learning
Q39687576	Optimization of Signal Decomposition Matched Filtering (SDMF) for Improved Detection of Copy-Number Variations
Q51864245	Optimization of cDNA microarray experimental designs using an evolutionary algorithm.
Q51909300	Optimization over a class of tree shape statistics.
Q99355771	Optimized elastic network models with direct characterization of inter-residue cooperativity for protein dynamics
Q38860776	Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics
Q38599911	Optimizing Phylogenetic Queries for Performance
Q40555424	Optimizing Spaced k-mer Neighbors for Efficient Filtration in Protein Similarity Search
Q30406895	Optimizing a widely used protein structure alignment measure in expected polynomial time
Q51931016	Optimizing multiple seeds for protein homology search.
Q51545215	Optimizing phylogenetic networks for circular split systems.
Q89559246	Organisation-Oriented Coarse Graining and Refinement of Stochastic Reaction Networks
Q38404088	Organized Modularity in the Interactome: Evidence from the Analysis of Dynamic Organization in the Cell Cycle.
Q92688573	Orienting Conflicted Graph Edges Using Genetic Algorithms to Discover Pathways in Protein-Protein Interaction Networks
Q51923569	Ortholog clustering on a multipartite graph.
Q91572955	Oscillatory Dynamics of p53-Mdm2 Circuit in Response to DNA Damage Caused by Ionizing Radiation
Q30992589	Outlier Analysis and Top Scoring Pair for Integrated Data Analysis and Biomarker Discovery.
Q51539674	Output-sensitive algorithms for finding the nested common intervals of two general sequences.
Q38404081	P-Finder: Reconstruction of Signaling Networks from Protein-Protein Interactions and GO Annotations
Q114628910	P2GT: Fine-Grained Genomic Data Access Control With Privacy-Preserving Testing in Cloud Computing
Q101558222	PALLAS: Penalized mAximum LikeLihood and pArticle Swarms for Inference of Gene Regulatory Networks from Time Series Data
Q92695075	PASA: IDENTIFYING MORE CREDIBLE STRUCTURAL VARIANTS OF HEDOU12
Q35989258	PCID: A Novel Approach for Predicting Disease Comorbidity by Integrating Multi-Scale Data
Q98200720	PDGNet: Predicting Disease Genes Using a Deep Neural Network with Multi-view Features
Q90351671	POPBic: Pathway-based Order Preserving Biclustering algorithm towards the analysis of gene expression data
Q40207720	PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor
Q42695042	PREMER: a Tool to Infer Biological Networks
Q39018243	PSPEL: In Silico Prediction of Self-interacting Proteins from Amino Acids Sequences using Ensemble Learning
Q44182117	PairProSVM: protein subcellular localization based on local pairwise profile alignment and SVM.
Q51638339	Pairwise statistical significance of local sequence alignment using sequence-specific and position-specific substitution matrices.
Q89557664	ParaCells: A GPU Architecture for Cell-Centered Models in Computational Biology
Q89560180	Parallel Computation of the Burrows-Wheeler Transform of Short Reads Using Prefix Parallelism
Q40553496	Parallel Implementation of MAFFT on CUDA-Enabled Graphics Hardware
Q92695094	Parallel Methods for Finding k-Mismatch Shortest Unique Substrings Using GPU
Q40448924	Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel® Xeon Phi™ Coprocessor.
Q91296619	Parallel Protein Community Detection in Large-scale PPI Networks Based on Multi-source Learning
Q50271973	Parallel Stochastic discrete event simulation of calcium dynamics in neuron.
Q31107799	Parallel and Space-Efficient Construction of Burrows-Wheeler Transform and Suffix Array for Big Genome Data.
Q33437619	Parallel clustering algorithm for large data sets with applications in bioinformatics
Q33839143	Parallelized evolutionary learning for detection of biclusters in gene expression data.
Q53322169	Parallelizing Epistasis Detection in GWAS on FPGA and GPU-Accelerated Computing Systems.
Q47821122	Parameter estimation of biological phenomena: an unscented Kalman filter approach.
Q37861457	Parameter estimation using meta-heuristics in systems biology: a comprehensive review
Q48739124	Parameterized BLOSUM Matrices for Protein Alignment.
Q51607814	Parameterized algorithmics for finding connected motifs in biological networks.
Q51212913	Parametric estimation of the local false discovery rate for identifying genetic associations.
Q90441624	Pareto Optimization of Combinatorial Mutagenesis Libraries
Q47821169	Pareto optimal pairwise sequence alignment.
Q51133196	Pareto optimality in organelle energy metabolism analysis.
Q43570318	Parsimony score of phylogenetic networks: hardness results and a linear-time heuristic
Q38431280	Partitioning Biological Networks into Highly Connected Clusters with Maximum Edge Coverage
Q47656780	Pathway Analysis with Signaling Hypergraphs
Q39778555	Pattern Classification of Instantaneous Cognitive Task-load Through GMM Clustering, Laplacian Eigenmap, and Ensemble SVMs
Q51929494	Pattern identification in biogeography.
Q33897660	Peak tree: a new tool for multiscale hierarchical representation and peak detection of mass spectrometry data
Q33843142	Peakbin selection in mass spectrometry data using a consensus approach with estimation of distribution algorithms.
Q45960869	Peptide reranking with protein-peptide correspondence and precursor peak intensity information.
Q38911254	PerPAS: Topology-Based Single Sample Pathway Analysis Method.
Q40554177	Perfect Phylogeny Problems with Missing Values
Q51627771	Perfect sorting by reversals is not always difficult.
Q86063979	Performance Analysis of Chemotaxis Controllers: Which has Better Chemotaxis Controller, Escherichia coli or Paramecium caudatum?
Q98200743	Personalized Metabolic Analysis of Diseases
Q39004968	Petri net siphon analysis and graph theoretic measures for identifying combination therapies in cancer
Q115035610	PhenoGeneRanker: Gene and Phenotype Prioritization Using Multiplex Heterogeneous Networks
Q47660666	Phenotype Prediction from Metagenomic Data Using Clustering and Assembly with Multiple Instance Learning (CAMIL).
Q41457647	Phenotype-Dependent Coexpression Gene Clusters: Application to Normal and Premature Ageing
Q89555613	Phylogenetic Reconstruction for Copy-Number Evolution Problems
Q44494730	Phylogenetic networks based on the molecular clock hypothesis
Q43772489	Phylogenetic networks: modeling, reconstructibility, and accuracy
Q51930678	Phylogenetic super-networks from partial trees.
Q92393997	Physically-Inspired Gaussian Process Models for Post-Transcriptional Regulation in Drosophila
Q47656667	Plant Cell Population Tracking in a Honeycomb Structure Using an IMM Filter Based 3D Local Graph Matching Model
Q57186824	Plant Species Identification from Occluded Leaf Images
Q53019364	Pluribus-Exploring the Limits of Error Correction Using a Suffix Tree.
Q31111284	Poisson-based self-organizing feature maps and hierarchical clustering for serial analysis of gene expression data
Q90441628	PolyCluster: Minimum Fragment Disagreement Clustering for Polyploid Phasing
Q92695078	Polynomial-Time Algorithms for Phylogenetic Inference Problems involving duplication and reticulation
Q91789337	Post-Structuring Radiology Reports of Breast Cancer Patients for Clinical Quality Assurance
Q91196511	Potential Effect of Tobacco Consumption Through Smoking and Chewing Tobacco on IL1beta Protein Expression in Chronic Periodontitis Patients: In Silico Molecular Docking Study
Q91570585	Potential Pathogenic Genes Prioritization Based on Protein Domain Interaction Network Analysis
Q98200711	Pr[m]: An Algorithm for Protein Motif Discovery
Q31002083	Practical Guidelines for Incorporating Knowledge-Based and Data-Driven Strategies into the Inference of Gene Regulatory Networks
Q40207712	PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks
Q91572944	PredictFP2: a new computational model to predict fusion peptide domain in all retroviruses
Q92630958	Predicting Carbon Spectrum in Heteronuclear Single Quantum Coherence Spectroscopy for Online Feedback During Surgery
Q98950078	Predicting Coding Potential of RNA Sequences by Solving Local Data Imbalance
Q92876859	Predicting DNA methylation states with hybrid information based deep-learning model
Q114085193	Predicting Drug Synergism by Means of Non-Negative Matrix Tri-Factorization
Q40555418	Predicting Essential Proteins Based on Weighted Degree Centrality
Q89557251	Predicting FAD Interacting Residues with Feature Selection and Comprehensive Sequence Descriptors
Q89556964	Predicting Hospital Readmission via Cost-Sensitive Deep Learning
Q38457118	Predicting Hub Genes Associated with Cervical Cancer through Gene Co-Expression Networks
Q102330717	Predicting Human Intention-Behavior through EEG signal analysis using Multi-Scale CNN
Q98200736	Predicting Local Protein 3D Structures Using Clustering Deep Recurrent Neural Network
Q36105054	Predicting MHC-II binding affinity using multiple instance regression
Q35769545	Predicting Microbial Interactions Using Vector Autoregressive Model with Graph Regularization
Q40553491	Predicting Protein Function Using Multiple Kernels
Q38396874	Predicting Protein Function via Semantic Integration of Multiple Networks
Q38860753	Predicting Protein Functions by Using Unbalanced Random Walk Algorithm on Three Biological Networks
Q40554812	Predicting Protein Relationships to Human Pathways through a Relational Learning Approach Based on Simple Sequence Features
Q50571403	Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs.
Q40192710	Predicting Protein-Protein Interaction Sites with a Novel Membership Based Fuzzy SVM Classifier
Q99568628	Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-based Classifier Combined with a Multi-fold Learning Scheme
Q53497527	Predicting antimicrobial peptides by using increment of diversity with quadratic discriminant analysis method.
Q92077117	Predicting drug-drug interactions based on integrated similarity and semi-supervised learning
Q91122532	Predicting drug-target interactions with multi-label classification and label partitioning
Q92073989	Predicting essential proteins by integrating network topology, subcellular localization information, gene expression profile and GO annotation data
Q90846686	Predicting in-vitro transcription factor binding sites using DNA sequence + shape
Q43419305	Predicting ligand binding residues and functional sites using multipositional correlations with graph theoretic clustering and kernel CCA.
Q51638335	Predicting metabolic fluxes using gene expression differences as constraints.
Q51565432	Predicting metal-binding sites from protein sequence.
Q92822110	Predicting microRNA sequence using CNN and LSTM stacked in Seq2Seq architecture
Q38390369	Predicting microRNA-disease associations based on improved microRNA and disease similarities.
Q51931006	Predicting molecular formulas of fragment ions with isotope patterns in tandem mass spectra.
Q38375823	Predicting novel human gene ontology annotations using semantic analysis
Q40949871	Predicting nsSNPs the disrupt protein-protein interactions using docking
Q46043958	Predicting protein function by multi-label correlated semi-supervised learning
Q47189891	Predicting protein-ligand binding site using support vector machine with protein properties.
Q51072330	Predicting protein-protein interactions from protein domains using a set cover approach.
Q38789863	Predicting the Absorption Potential of Chemical Compounds through a Deep Learning Approach
Q38457993	Predicting the Pro-Longevity or Anti-Longevity Effect of Model Organism Genes with New Hierarchical Feature Selection Methods
Q41241314	Predicting the Subcellular Localization of Proteins with Multiple Sites Based on Multiple Features Fusion
Q92882499	Predicting the antigenic relationship of foot-and-mouth disease virus for vaccine selection through a computational model
Q98567144	Predicting the prognosis of MCI patients using longitudinal MRI data
Q40553538	Prediction and Informative Risk Factor Selection of Bone Diseases
Q39987211	Prediction and Validation of Disease Genes Using HeteSim Scores
Q90852432	Prediction of DNA-binding residues in local segments of protein sequences with Fuzzy Cognitive Maps
Q100380654	Prediction of Essential Genes in Comparison States Using Machine Learning
Q40173643	Prediction of Essential Proteins Based on Local Interaction Density
Q92412485	Prediction of FMN Binding Sites in Electron Transport Chains based on 2-D CNN and PSSM Profiles
Q100997178	Prediction of Glioma Grade using Intratumoral and Peritumoral Radiomic Features from Multiparametric MRI Images
Q30775431	Prediction of Growth Factor-Dependent Cleft Formation During Branching Morphogenesis Using A Dynamic Graph-Based Growth Model
Q38780820	Prediction of HIV Drug Resistance by combining Sequence and Structural Properties
Q89561252	Prediction of Hot Regions in PPIs Based on Improved Local Community Structure Detecting
Q100939790	Prediction of Malignant Breast Cancer Cases using Ensemble Machine Learning: A Case Study of Pesticides Prone Area
Q53142730	Prediction of Novel Drugs for Hepatocellular Carcinoma Based on Multi-Source Random Walk.
Q89557668	Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks
Q86299637	Prediction of Protein Coding Regions Using a Wide-Range Wavelet Window Method
Q36469775	Prediction of R5, X4, and R5X4 HIV-1 coreceptor usage with evolved neural networks
Q90982598	Prediction of TF-binding site by inclusion of higher order position dependencies
Q33437622	Prediction of cancer class with majority voting genetic programming classifier using gene expression data
Q51930822	Prediction of consensus RNA secondary structures including pseudoknots.
Q93266820	Prediction of drug-target interactions based on network representation learning and ensemble learning
Q33843154	Prediction of protein functions with gene ontology and interspecies protein homology data
Q38454856	Prediction the Substrate Specificities of Membrane Transport Proteins Based on Support Vector Machine and Hybrid Features
Q98296475	Pregnancy Associated Breast Cancer gene expressions : new insights on their regulation based on Rare Correlated Patterns
Q91481992	Preprocessing Sequence Coverage Data for Precise Detection of Copy Number Variations
Q92074016	Prioritizing type 2 diabetes genes by weighted PageRank on bilayer heterogeneous networks
Q64044012	Privacy-Preserving Linkage of Genomic and Clinical Data Sets
Q31036679	Private Data Analytics on Biomedical Sensing Data via Distributed Computation
Q51576828	Probabilistic Boolean Network Modelling and Analysis Framework for mRNA Translation.
Q40207706	Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites
Q46873192	Probabilistic Reconstruction of Ancestral Gene Orders with Insertions and Deletions
Q44411323	Probabilistic analysis of probe reliability in differential gene expression studies with short oligonucleotide arrays
Q38032460	Probabilistic arithmetic automata and their applications
Q44020341	Probabilistic biological network alignment
Q33691196	Probabilistic mixture regression models for alignment of LC-MS data
Q51124867	Probabilistic model checking analysis of palytoxin effects on cell energy reactions of the Na+/K+-ATPase.
Q38333229	Probabilistic models for semisupervised discriminative motif discovery in DNA sequences
Q30357461	Probabilistic search and energy guidance for biased decoy sampling in ab initio protein structure prediction.
Q91296610	Probe Efficient Feature Representation of Gapped K-mer Frequency Vectors from Sequences Using Deep Neural Networks
Q95515546	Probing the Relation Between Community Evolution in Dynamic Residue Interaction Networks and Xylanase Thermostability
Q38780627	Process Simulation of Complex Biological Pathways in Physical Reactive Space and Reformulated for Massively Parallel Computing Platforms
Q38404052	Product Grammars for Alignment and Folding
Q92695071	Profile Hidden Markov Models are Not Identifiable
Q30660549	Profile-Based LC-MS data alignment--a Bayesian approach
Q39589840	Prognosis of Clinical Outcomes with Temporal Patterns and Experiences with One Class Feature Selection
Q92209448	Programming Substrate-Independent Kinetic Barriers with Thermodynamic Binding Networks
Q51894663	Progressive tree neighborhood applied to the maximum parsimony problem.
Q89557141	ProtDet-CCH: Protein Remote Homology Detection by Combining Long Short-Term Memory and Ranking Methods
Q90033028	Protecting Privacy and Security of Genomic Data in i2b2 with Homomorphic Encryption and Differential Privacy
Q39856716	Protein Complex Detection via Effective Integration of Base Clustering Solutions and Co-Complex Affinity Scores.
Q90457479	Protein Complexes Detection based on Semi-Supervised Network Embedding Model
Q91548146	Protein Complexes Identification with Family-Wise Error Rate Control
Q91373060	Protein Crystallization Identification via Fuzzy Model on Linear Neighborhood Representation
Q89555606	Protein Domain Level Cancer Drug Targets in the Network of MAPK Pathways
Q92688567	Protein Family Classification from Scratch: A CNN based Deep Learning Approach
Q94478619	Protein Fold Recognition Based on Auto-Weighted Multi-view Graph Embedding Learning Model
Q92659905	Protein Fold Recognition by Combining Support Vector Machines and Pairwise Sequence Similarity Scores
Q98200752	Protein Fold Recognition from Sequences using Convolutional and Recurrent Neural Networks
Q50666718	Protein Function Prediction with Incomplete Annotations.
Q31156088	Protein Inference from the Integration of Tandem MS Data and Interactome Networks
Q89496863	Protein Remote Homology Detection and Fold Recognition Based on Sequence-Order Frequency Matrix
Q92630781	Protein Structure Prediction Using Population-based Algorithm Guided by Information Entropy
Q30357703	Protein chain pair simplification under the discrete Fréchet distance.
Q51575342	Protein classification with Extended-Sequence Coding by sliding window.
Q38485092	Protein complex prediction in large ontology attributed protein-protein interaction networks
Q34145495	Protein complexes discovery based on protein-protein interaction data via a regularized sparse generative network model
Q38379911	Protein design by sampling an undirected graphical model of residue constraints
Q44412705	Protein function prediction using multilabel ensemble classification
Q30382094	Protein structure classification based on conserved hydrophobic residues.
Q30357706	Protein structure optimization with a "Lamarckian" ant colony algorithm.
Q89496783	Protein-Protein Interaction Identification Using a Similarity-Constrained Graph Model
Q38765622	Protein-protein interaction interface residue pair prediction based on deep learning architecture.
Q93070842	Protein2Vec: Aligning Multiple PPI Networks with Representation Learning
Q40514157	Proteomic evidence for in-frame and out-of-frame alternatively spliced isoforms in human and mouse
Q35066174	Proximity measures for clustering gene expression microarray data: a validation methodology and a comparative analysis
Q51032874	Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices.
Q34574782	Pure multiple RNA secondary structure alignments: a progressive profile approach
Q51695155	Pure parsimony xor haplotyping.
Q30392390	Purely Structural Protein Scoring Functions Using Support Vector Machine and Ensemble Learning
Q38759354	Putative Drug and Vaccine Target Identification in Leishmania donovani Membrane Proteins Using Naïve Bayes Probabilistic Classifier
Q86897658	PyMut: A Web Tool for Overlapping Gene Loss-of-Function Mutation Design
Q47765217	Qualitative reasoning for biological network inference from systematic perturbation experiments
Q35768876	Quantifying Significance of MHC II Residues.
Q89558688	Quantifying direct dependencies in biological networks by multiscale association analysis
Q50986160	Quantifying dynamic stability of genetic memory circuits.
Q51642968	Quantifying the degree of self-nestedness of trees: application to the structural analysis of plants.
Q50856314	Quantitative Measurement of Split of the Second Heart Sound (S2).
Q90362918	Quantitative Regular Expressions for Arrhythmia Detection
Q33357434	Quantitative analysis of live-cell growth at the shoot apex of Arabidopsis thaliana: algorithms for feature measurement and temporal alignment
Q46146619	Quantitative analysis of the self-assembly strategies of intermediate filaments from tetrameric vimentin
Q51157375	Quantitative prediction of peptide binding to HLA-DP1 protein.
Q51545226	Quantum gate circuit model of signal integration in bacterial quorum sensing.
Q51923565	Quartet-based phylogeny reconstruction with answer set programming.
Q46251205	Quartets MaxCut: a divide and conquer quartets algorithm
Q89497405	Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle
Q91035321	Querying Representative and Informative Super-pixels for Filament Segmentation in Bioimages
Q33586068	Querying graphs in protein-protein interactions networks using feedback vertex set.
Q31148551	Querying of Disparate Association and Interaction Data in Biomedical Applications.
Q51362800	QuickVina: accelerating AutoDock Vina using gradient-based heuristics for global optimization.
Q39005132	RAFP-Pred: Robust Prediction of Antifreeze Proteins using Localized Analysis of n-Peptide Compositions
Q45930944	RANGI: a fast list-colored graph motif finding algorithm.
Q38386880	RBioCloud: A Light-Weight Framework for Bioconductor and R-based Jobs on the Cloud
Q45756732	RDCurve: a nonparametric method to evaluate the stability of ranking procedures
Q45962116	RENNSH: a novel α-helix identification approach for intermediate resolution electron density maps.
Q31064003	REPA: Applying Pathway Analysis to Genome-wide Transcription Factor Binding Data.
Q89497399	RF-NR: Random Forest Based Approach for Improved Classification of Nuclear Receptors
Q93125063	RFCM3: Computational Method for Identification of miRNA-mRNA Regulatory Modules in Cervical Cancer
Q30488312	RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information
Q92822142	RNA Secondary Structure Prediction with Pseudoknots using Chemical Reaction Optimization Algorithm
Q38750027	RNA Visualization: Relevance and the Current State-of-the-Art Focusing on Pseudoknots
Q91637443	RNA flexibility prediction with sequence profile and predicted solvent accessibility
Q36823010	RNA search with decision trees and partial covariance models
Q38109004	RNA secondary structure prediction using soft computing
Q93123082	RNA-Protein Binding Sites Prediction via Multi Scale Convolutional Gated Recurrent Unit Networks
Q40554170	RNA-Seq Analysis Pipeline Based on Oshell Environment
Q91653811	RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
Q104467836	RNN-VirSeeker: a deep learning method for identification of short viral sequences from metagenomes
Q30992826	RPCA-Based Tumor Classification Using Gene Expression Data
Q91570591	RSwitch: a novel bioinformatics database on riboswitches as antibacterial drug targets
Q53671915	Random sets of stadiums in square and collective behavior of bacteria.
Q47615934	Randomized Subspace Learning for Proline Cis-Trans Isomerization Prediction
Q93172254	Ranked k-spectrum kernel for comparative and evolutionary comparison of exons, introns, and CpG islands
Q40552878	Rapid Assessment of Adverse Drug Reactions by Statistical Solution of Gene Association Network.
Q90721005	Rapid Reconstruction of Time-Varying Gene Regulatory Networks
Q90716133	Rapid Reconstruction of Time-varying Gene Regulatory Networks with Limited Main Memory
Q40553550	Reachability Analysis in Probabilistic Biological Networks
Q51670589	Rearrangement phylogeny of genomes in contig form.
Q34736487	Rearrangement-based phylogeny using the Single-Cut-or-Join operation
Q30409360	Reassortment Networks and the evolution of pandemic H1N1 swine-origin influenza
Q51701156	Reassortment networks for investigating the evolution of segmented viruses.
Q51600729	Recipe for uncovering predictive genes using support vector machines based on model population analysis.
Q91270021	Reconciliation Reconsidered: In Search of a Most Representative Reconciliation in the Duplication-Transfer-Loss Model
Q31120414	Reconstructing recombination network from sequence data: the small parsimony problem
Q28289285	Reconstruction of 3D structures from protein contact maps
Q37499953	Reconstruction of Gene Regulatory Networks based on Repairing Sparse Low-rank Matrices
Q44718595	Reconstruction of signaling network from protein interactions based on function annotations
Q36840512	Reconstruction of transcriptional regulatory networks by stability-based network component analysis.
Q38858592	Recovering hidden diagonal structures via non-negative matrix factorization with multiple constraints.
Q44386064	Recursive Mahalanobis separability measure for gene subset selection
Q83906856	Reduced false positives in PDZ binding prediction using sequence and structural descriptors
Q50199798	Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis.
Q33404002	Refining phylogenetic trees given additional data: an algorithm based on parsimony
Q46980662	Refining regulatory networks through phylogenetic transfer of information.
Q42621423	Reformulated Kemeny optimal aggregation with application in consensus ranking of microRNA targets
Q31107816	Reframed Genome-Scale Metabolic Model to Facilitate Genetic Design and Integration with Expression Data
Q40411604	Region Growing for Segmenting Green Microalgae Images
Q51670608	Regular networks can be uniquely constructed from their trees.
Q38967489	Regularized Non-negative Matrix Factorization for Identifying Differential Genes and Clustering Samples: a Survey.
Q51909307	Regulatory motif discovery using a population clustering evolutionary algorithm.
Q36378503	Reinforce: An Ensemble Approach for Inferring PPI Network from AP-MS Data
Q98200706	Relating Translation Efficiency to Protein Networks Provides Evolutionary Insights in Shewanella and Its Implications for Extracellular Electron Transfer
Q98774997	Relation Extraction from Biomedical and Clinical Text: Unified Multitask Learning Framework
Q91795458	Relation Prediction of Co-morbid Diseases Using Knowledge Graph Completion
Q31046964	Relational Agreement Measures for Similarity Searching of Cheminformatic Data Sets
Q51915920	Relational analysis of CpG islands methylation and gene expression in human lymphomas using possibilistic C-means clustering and modified cluster fuzzy density.
Q40554223	Reliable Radiation Hybrid Maps: An Efficient Scalable Clustering-Based Approach
Q40555810	Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte Carlo
Q51901938	Removing noise and ambiguities from comparative maps in rearrangement analysis.
Q46146005	Reproducibility-optimized test statistic for ranking genes in microarray studies
Q91897272	ResNet-SCDA-50 for breast abnormality classification
Q50856329	ResSeq: Enhancing Short-Read Sequencing Alignment By Rescuing Error-Containing Reads.
Q51705546	Residue Specific and Chirality Dependent Interactions between Carbon Nanotubes and Flagellin.
Q40555829	Residue-Specific Side-Chain Polymorphisms via Particle Belief Propagation
Q30402135	Residues with similar hexagon neighborhoods share similar side-chain conformations
Q92695471	Resolving colliding larvae by fitting ASM to random walker-based pre-segmentations
Q89557565	Resource Cut, a New Bounding Procedure to Algorithms for Enumerating Tree-Like Chemical Graphs
Q51014060	Reverse engineering and analysis of genome-wide gene regulatory networks from gene expression profiles using high-performance computing.
Q33733583	Reverse engineering molecular hypergraphs
Q90351666	Revisiting Parameter Estimation in Biological Networks: Influence of Symmetries
Q45947323	Reviving the Two-state Markov Chain Approach.
Q51605031	Ribosome Flow Model on a Ring.
Q89560941	Rich Chromatin Structure Prediction from Hi-C Data
Q48075186	RnaPredict--an evolutionary algorithm for RNA secondary structure prediction
Q34284936	Robust Bayesian clustering for replicated gene expression data
Q47918545	Robust Dynamic Multi-objective Vehicle Routing Optimization Method.
Q89556393	Robust Gene Circuit Control Design for Time-Delayed Genetic Regulatory Networks Without SUM Regulatory Logic
Q89558442	Robust Inductive Matrix Completion Strategy to Explore Associations Between LincRNAs and Human Disease Phenotypes
Q89557446	Robust Microbial Markers for Non-Invasive Inflammatory Bowel Disease Identification
Q50798033	Robust Multiobjective Controllability of Complex Neuronal Networks.
Q47999383	Robust Reachability of Boolean Control Networks
Q58592052	Robust Recurrent CNV Detection in the Presence of Inter-Subject Variability
Q82187017	Robust classification method of tumor subtype by using correlation filters
Q33897663	Robust feature selection for microarray data based on multicriterion fusion
Q33404000	Robustness of topological supertree methods for reconciling dense incompatible data
Q34357635	Rough-fuzzy clustering for grouping functionally similar genes from microarray data
Q99206630	Row and Column Structure-based Biclustering for Gene Expression Data
Q102205247	SACall: a neural network basecaller for Oxford Nanopore sequencing data based on self-attention mechanism
Q56467100	SAFETY: Secure gwAs in Federated Environment Through a hYbrid solution
Q34146727	SARNA-Predict: accuracy improvement of RNA secondary structure prediction using permutation-based simulated annealing.
Q47297136	SC(3): Triple spectral clustering-based consensus clustering framework for class discovery from cancer gene expression profiles
Q51600721	SCJ: a breakpoint-like distance that simplifies several rearrangement problems.
Q33645316	SCS: Signal, Context, and Structure Features for Genome-Wide Human Promoter Recognition
Q102384915	SEDA: a Desktop Tool Suite for FASTA Files Processing
Q48152231	SEGA: semiglobal graph alignment for structure-based protein comparison
Q91795448	SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures
Q93000798	SL 2 MF: Predicting Synthetic Lethality in Human Cancers via Logistic Matrix Factorization
Q51607804	SLIDER: a generic metaheuristic for the discovery of correlated motifs in protein-protein interaction networks.
Q93178185	SNP data science for classification of bipolar disorder I and bipolar disorder II
Q92597145	SNeCT: Scalable Network Constrained Tucker Decomposition for Multi-Platform Data Profiling
Q44396700	SP-dock: protein-protein docking using shape and physicochemical complementarity
Q92822091	SPADIS: An Algorithm for Selecting Predictive and Diverse SNPs in GWAS
Q89497859	SPF-CellTracker: Tracking Multiple Cells with Strongly-Correlated Moves Using a Spatial Particle Filter
Q98200737	SSKM_Succ: A novel succinylation sites prediction method incorprating K-means clustering with a new semi-supervised learning algorithm
Q89837357	STIC: Predicting Single Nucleotide Variants and Tumor Purity in Cancer Genome
Q58543744	SVSR: a Program to Simulate Structural Variations and Generate Sequencing Reads for Multiple Platforms
Q89559192	Safely Filling Gaps with Partial Solutions Common to All Solutions
Q31156024	Sampled-Data Stabilization for Fuzzy Genetic Regulatory Networks with Leakage Delays
Q92440044	Sampled-Data State Estimation of Reaction Diffusion Genetic Regulatory Networks via Space-Dividing Approaches
Q47993881	Scaffold filling under the breakpoint and related distances
Q57214252	Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
Q92630973	Scalable De Novo Genome Assembly Using a Pregel-Like Graph-Parallel System
Q99613320	Scalable Non-Linear Graph Fusion for Prioritizing Cancer-Causing Genes
Q91602745	Schema Matching and Data Integration with Consistent Naming on Protein Crystallization Screens
Q63248454	Screening pipeline for Flavivirus based Inhibitors for Zika Virus NS1
Q53619062	Search for a Minimal Set of Parameters by Assessing the Total Optimization Potential for a Dynamic Model of a Biochemical Network.
Q51887298	Search for steady states of piecewise-linear differential equation models of genetic regulatory networks.
Q39990207	Searching Genome-Wide Multi-Locus Associations for Multiple Diseases Based on Bayesian Inference
Q40552967	Searching High-Order SNP Combinations for Complex Diseases Based on Energy Distribution Difference
Q33758243	Searching for coexpressed genes in three-color cDNA microarray data using a probabilistic model-based Hough Transform.
Q46071518	Searching genomes for noncoding RNA using FastR.
Q57186820	Secondary Structure and Contact Guided Differential Evolution for Protein Structure Prediction
Q89557651	Secure Wavelet Matrix: Alphabet-Friendly Privacy-Preserving String Search for Bioinformatics
Q89557337	SecureLR: Secure Logistic Regression Model via a Hybrid Cryptographic Protocol
Q40339996	Security Assessment of Cyberphysical Digital Microfluidic Biochips
Q40554850	SeeSite: Characterizing Relationships between Splice Junctions and Splicing Enhancers
Q44780374	Seeded tree alignment
Q48911510	Selected Articles from the 2012 IEEE International Workshop on Genomic Signal Processing and Statistics (GENSIPS 2012).
Q38337036	Selecting oligonucleotide probes for whole-genome tiling arrays with a cross-hybridization potential
Q100939787	SelfAT-Fold: protein fold recognition based on residue-based and motif-based self-attention networks
Q98200707	SelfE: Gene Selection via Self-Expression for Single-Cell Data
Q38495853	Semantics and ambiguity of stochastic RNA family models
Q38382087	Semantics of multimodal network models.
Q82432334	Semi-Markov models for brownian dynamics permeation in biological ion channels
Q91055794	Semi-supervised Topological Analysis for Elucidating Hidden Structures in High-Dimensional Transcriptome Datasets
Q91770751	Semiglobal Sequence Alignment with Gaps using GPU
Q48924971	Semisupervised learning for molecular profiling.
Q98200742	Seq-BEL: Sequence-based Ensemble Learning for Predicting Virus-human Protein-protein Interaction
Q92847790	Seq2seq Fingerprint with Byte-Pair Encoding for Predicting Changes in Protein Stability upon Single Point Mutation
Q51336337	Sequence-based prediction of DNA-binding residues in proteins with conservation and correlation information.
Q44480946	Sequence-based prediction of microRNA-binding residues in proteins using cost-sensitive Laplacian support vector machines
Q89497401	Sequence-based prediction of putative transcription factor binding sites in DNA sequences of any length
Q39772048	Sequencing-by-hybridization revisited: the analog-spectrum proposal
Q38458009	Shifting-and-Scaling Correlation Based Biclustering Algorithm
Q48345877	Shorelines of islands of tractability: algorithms for parsimony and minimum perfect phylogeny haplotyping problems.
Q46225203	Shrinkage effect in ancestral maximum likelihood.
Q33568414	Signal quality measurements for cDNA microarray data
Q39004835	Significance and Functional Similarity for Identification of Disease Genes
Q45965712	Significance of gene ranking for classification of microarray samples.
Q98200729	Significance-Based Essential Protein Discovery
Q51538156	SimBioNeT: a simulator of biological network topology.
Q38584251	Similarity Measures for Comparing Biclusterings.
Q50775167	Similarity Search of Flexible 3D Molecules Combining Local and Global Shape Descriptors.
Q51901923	Simplified partial digest problem: enumerative and dynamic programming algorithms.
Q90491398	Simulating the Large-Scale Erosion of Genomic Privacy Over Time
Q51613353	Simultaneous identification of duplications and lateral gene transfers.
Q51362796	Simultaneous identification of duplications, losses, and lateral gene transfers.
Q92596970	Single-Cell RNA Sequencing Data Interpretation by Evolutionary Multiobjective Clustering
Q100481905	Single-cell RNA Sequencing Data Clustering by Low-Rank Subspace Ensemble Framework
Q51545221	Smoldyn on graphics processing units: massively parallel Brownian dynamics simulations.
Q30401502	Smolign: a spatial motifs-based protein multiple structural alignment method
Q51599654	Soft Ngram Representation and Modeling for Protein Remote Homology Detection.
Q91272912	Softepigen: Primers Design Web-Based Tool for MS-HRM Technique
Q38404038	Software Suite for Gene and Protein Annotation Prediction and Similarity Search.
Q38969684	Solving NP-Hard Problems with Physarum-Based Ant Colony System
Q41609057	Solving the Secondary Structure Matching Problem in Cryo-EM De Novo Modeling Using a Constrained K-Shortest Path Graph Algorithm
Q45413453	Solving the preserving reversal median problem
Q42663752	Solving the problem of Trans-Genomic Query with alignment tables
Q51598289	Some mathematical refinements concerning error minimization in the genetic code.
Q46611446	Sorting Circular Permutations by Super Short Reversals.
Q35769551	Sorting Linear Genomes with Rearrangements and Indels
Q94584549	Sorting Signed Permutations by Intergenic Reversals
Q92074024	Sorting Signed Permutations by Inverse Tandem Duplication Random Losses
Q51701140	Sorting genomes by reciprocal translocations, insertions, and deletions.
Q38860725	Sparse Pathway-Induced Dynamic Network Biomarker Discovery for Early Warning Signal Detection in Complex Diseases
Q92497616	Sparse Reconstruction of Glucose Fluxes using Continuous Glucose Monitors
Q44738227	Sparse support vector machines with Lp penalty for biomarker identification
Q40360941	SparseNCA: Sparse Network Component Analysis for Recovering Transcription Factor Activities with Incomplete Prior Information.
Q100380657	Spatial Pyramid Pooling with 3D Convolution Improves Lung Cancer Detection
Q29398509	Spatial Quantification of Cytosolic Ca$^{2+}$ Accumulation in Nonexcitable Cells:An Analytical Study
Q104557984	Spatial distribution of antibiotic-producing bacteria in urban areas. A case study in Valencia (Spain)
Q40218780	Spatio-temporal analysis of constitutive exocytosis in epithelial cells
Q51853117	Special section: phylogenetics.
Q46295235	Species tree estimation using ASTRAL: how many genes are enough?
Q39004879	Species tree inference from gene splits by Unrooted STAR methods
Q46332104	SpeedHap: an accurate heuristic for the single individual SNP haplotyping problem with many gaps, high reading error rate and low coverage
Q114085194	StLiter: A Novel Algorithm to Iteratively Build the Compacted de Bruijn Graph From Many Complete Genomes
Q93210701	Stability Analysis of Biological Networks' Diffusion State
Q56798160	Stability Analysis of the Ribosome Flow Model
Q104799551	Stability and bifurcation analysis of a diffusive miR-9/Hes1 network with time delay
Q40207701	Stable Gene Signature Selection for Prediction of Breast Cancer Recurrence Using Joint Mutual Information.
Q89558232	Stable IL- 1β-Activation in an Inflammasome Signalling Model Depends on Positive and Negative Feedbacks and Tight Regulation of Protein Production
Q33839153	Stable gene selection from microarray data via sample weighting
Q89557655	Stage-Dependent Gene Expression Profiling in Colorectal Cancer
Q99589020	Statistical Analysis of Microarray Data Clustering using NMF, Spectral Clustering, Kmeans, and GMM
Q89498008	Statistical Association Mapping of Population-Structured Genetic Data
Q40552854	Statistical Detection of Intrinsically Multivariate Predictive Genes
Q89496776	Statistical Framework for Uncertainty Quantification in Computational Molecular Modeling
Q51834747	Statistical alignment with a sequence evolution model allowing rate heterogeneity along the sequence.
Q33610156	Statistical analysis of RNA backbone
Q47940622	Statistical characterization of protein ensembles
Q51127015	Statistical detection of boolean regulatory relationships.
Q89557947	Stepwise Tikhonov Regularisation: Application to the Prediction of HIV-1 Drug Resistance
Q51481036	Stochastic gene expression modeling with Hill function for switch-like gene responses.
Q44085517	Stochastic model simulation using Kronecker product analysis and Zassenhaus formula approximation
Q31113473	Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data
Q31120416	Strategies for identifying statistically significant dense regions in microarray data
Q51761779	Strategy for naturelike designer transcription factors with reduced toxicity.
Q92155591	Structural Bistability Analysis of Flower-shaped and Chain-shaped Boolean Networks
Q30397812	Structural Class Classification of 3D Protein Structure Based on Multi-view 2D Images
Q45961628	Structural SCOP superfamily level classification using unsupervised machine learning.
Q89560536	Structural Target Controllability of Linear Networks
Q100953219	Structural bioinformatic survey of protein-small molecule interfaces delineates the role of glycine in surface pocket formation
Q44246988	Structural properties of gene regulatory networks: definitions and connections
Q30390480	Structure-guided Protein Transition Modeling with a Probabilistic Roadmap Algorithm
Q89496702	Structured Penalized Logistic Regression for Gene Selection in Gene Expression Data Analysis
Q50856801	Study of the Paired Change Points in Bacterial Genes.
Q86444216	Studying the role of lipid rafts on protein receptor bindings with cellular automata
Q51526237	Subcellular localization prediction through boosting association rules.
Q51014128	Subcellular localization prediction with new protein encoding schemes.
Q89555456	Submodular Generalized Matching for Peptide Identification in Tandem Mass Spectrometry
Q36379799	Subspace Weighting Co-Clustering of Gene Expression Data
Q39502926	Summarizing probe intensities of affymetrix GeneChip 3' expression arrays taking into account day-to-day variability
Q50527066	Super-Thresholding: Supervised Thresholding of Protein Crystal Images.
Q39852456	SuperMIC: Analyzing Large Biological Datasets in Bioinformatics with Maximal Information Coefficient
Q46856189	SuperQ: computing supernetworks from quartets
Q51909301	Superiority of spaced seeds for homology search.
Q51598299	Superposition and alignment of labeled point clouds.
Q50562205	Supervised Variational Relevance Learning, An Analytic Geometric Feature Selection with Applications to Omic Datasets.
Q92659901	Supervised dimension reduction for large-scale "omics" data with censored survival outcomes under possible non-proportional hazards
Q98200749	Supervised graph clustering for cancer subtyping based on survival analysis and integration of multi-omic tumor data
Q38590406	Supervised, Unsupervised, and Semi-Supervised Feature Selection: A Review on Gene Selection.
Q50672160	Swarm Robots Search for Multiple Targets Based on an Improved Grouping Strategy.
Q89496857	Switched Latent Force Models for Reverse-Engineering Transcriptional Regulation in Gene Expression Data
Q45952817	Symbiosis-Based Alternative Learning Multi-Swarm Particle Swarm Optimization.
Q44674848	Symmetry compression method for discovering network motifs
Q51901931	SynPAM-a distance measure based on synonymous codon substitutions.
Q50754748	Synchronization of Asynchronous Switched Boolean Network.
Q50856796	Synchronization of Boolean Networks with Different Update Schemes.
Q104691170	Synchronization of hyper-Lorenz system based on DNA strand Displacement
Q100677912	Synergy Between Embedding and Protein Functional Association Networks for Drug Label Prediction using Harmonic Function
Q86429628	Synthesis of Genetic Clock with Combinational Biologic Circuits
Q92822117	Synthesis of the Dynamical Properties of Feedback Loops in Bio-pathways
Q86102866	Systematic Approach to Computational Design of Gene Regulatory Networks with Information Processing Capabilities
Q35769566	Systematic Biological Filter Design with a Desired I/O Filtering Response Based on Promoter-RBS Libraries
Q89557660	Systematic Inspection of the Clinical Relevance of TP53 Missense Mutations in Gastric Cancer
Q42264944	Systematic analysis of the mechanisms of virus-triggered type I IFN signaling pathways through mathematical modeling
Q57888187	TCBB Special Section on the Brazilian Symposium on Bioinformatics 2013
Q33579908	TCLUST: a fast method for clustering genome-scale expression data
Q51593707	TRIAL: a tool for finding distant structural similarities.
Q89560935	Taming Asynchrony for Attractor Detection in Large Boolean Networks
Q48000826	Tanglegrams: a Reduction Tool for Mathematical Phylogenetics
Q91158991	TargetDBP: Accurate DNA-Binding Protein Prediction via Sequence-based Multi-View Feature Learning
Q46606591	Temporal logics for phylogenetic analysis via model checking
Q57184693	Term-based Personalization for Feature Selection in Clinical Handover Form Auto-filling
Q30725168	Text categorization of biomedical data sets using graph kernels and a controlled vocabulary.
Q42600821	Text mining biomedical literature for discovering gene-to-gene relationships: a comparative study of algorithms
Q39005197	The Discovery of Mutated Driver Pathways in Cancer: Models and Algorithms
Q37107007	The GA and the GWAS: using genetic algorithms to search for multilocus associations.
Q39990474	The Intrinsic Geometric Structure of Protein-Protein Interaction Networks for Protein Interaction Prediction
Q39004965	The Intrinsic Pepsin Resistance of Interleukin-8 Can be Explained from a Combined Bioinformatical and Experimental Approach
Q44924132	The JigCell model builder: a spreadsheet interface for creating biochemical reaction network models.
Q51453892	The Kernel of Maximum Agreement Subtrees.
Q51511492	The LASSO and sparse least square regression methods for SNP selection in predicting quantitative traits.
Q40578079	The Max-Min High-Order Dynamic Bayesian Network for Learning Gene Regulatory Networks with Time-Delayed Regulations
Q82212610	The Metropolized Partial Importance Sampling MCMC mixes slowly on minimum reversal rearrangement paths
Q114085192	The Neural Metric Factorization for Computational Drug Repositioning
Q51603702	The Relevance of Topology in Parallel Simulation of Biological Networks.
Q89497743	The Robust Classification Model Based on Combinatorial Features
Q61925328	The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Q92440059	The Unconstrained Diameters of the Duplication-Loss Cost and the Loss Cost
Q92137540	The Use of Informed Priors in Biclustering of Gene Expression with the Hierarchical Dirichlet Process
Q45965716	The applicability of recurrent neural networks for biological sequence analysis.
Q51545218	The complexity of finding multiple solutions to betweenness and quartet compatibility.
Q30631759	The depth problem: identifying the most representative units in a data group
Q51834761	The gene-duplication problem: near-linear time algorithms for NNI-based local searches.
Q51853544	The identifiability of covarion models in phylogenetics.
Q30402601	The impact of multiple protein sequence alignment on phylogenetic estimation
Q44884361	The impact of normalization and phylogenetic information on estimating the distance for metagenomes
Q92962947	The impact of self-loops on Boolean networks attractor landscape and implications for cell differentiation modelling
Q31067097	The latent process decomposition of cDNA microarray data sets
Q46084811	The number of recombination events in a sample history: conflict graph and lower bounds
Q43904833	The phosphorylation of the heat shock factor as a modulator for the heat shock response
Q46747849	The plexus model for the inference of ancestral multidomain proteins.
Q38468250	The propagation approach for computing biochemical reaction networks
Q42610177	The quality preserving database: a computational framework for encouraging collaboration, enhancing power and controlling false discovery
Q33857034	The receiver operational characteristic for binary classification with multiple indices and its application to the neuroimaging study of Alzheimer's disease
Q47249613	The undirected incomplete perfect phylogeny problem
Q100508721	The γ-OMP algorithm for feature selection with application to gene expression data
Q89497740	Theory and A Heuristic for the Minimum Path Flow Decomposition Problem
Q51107661	Thermodynamic Post-Processing versus GC-Content Pre-Processing for DNA Codes Satisfying the Hamming Distance and Reverse-Complement Constraints.
Q47978296	Three-Dimensional Path Planning for Uninhabited Combat Aerial Vehicle Based on Predator-Prey Pigeon-Inspired Optimization in Dynamic Environment
Q51930793	Three-dimensional shape-structure comparison method for protein classification.
Q34243442	Time series dependent analysis of unparametrized Thomas networks.
Q40352097	Time-Dependent Gene Network Modelling by Sequential Monte Carlo
Q90920967	Time-Varying Differential Network Analysis for Revealing Network Rewiring over Cancer Progression
Q91423088	Tissue-Specific Subcellular Localization Prediction Using Multi-Label Markov Random Fields
Q89497534	ToBio: Global Pathway Similarity Search Based on Topological and Biological Features
Q47578446	Top-k similar graph matching using TraM in biological networks.
Q92074030	Topological metrizations of trees, and new quartet methods of tree inference
Q51931019	Topological rearrangements and local search method for tandem duplication trees.
Q42681627	Topology improves phylogenetic motif functional site predictions
Q35969988	Touring protein space with Matt
Q51670583	Toward a robust search method for the protein-drug docking problem.
Q51593699	Toward better understanding of protein secondary structure: extracting prediction rules.
Q47735463	Toward verified biological models
Q91770737	Towards Optimal Decomposition of Boolean Networks
Q39004888	Towards Unsupervised Gene Selection: A Matrix Factorization Framework
Q38398422	Towards extracting supporting information about predicted protein-protein interactions
Q50856524	Tractable Cases of (*,2)-Bounded Parsimony Haplotyping.
Q33720610	Transactional database transformation and its application in prioritizing human disease genes
Q50532856	Transductive Learning for Multi-Label Protein Subchloroplast Localization Prediction.
Q89555470	Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks
Q51477948	Transfer String Kernel for Cross-Context DNA-Protein Binding Prediction.
Q90351652	Transforming UTE-mDixon MR Abdomen-Pelvis Images into CT by Jointly Leveraging Prior Knowledge and Partial Supervision
Q45780423	Transient dynamics of reduced-order models of genetic regulatory networks
Q42601034	TreeDT: tree pattern mining for gene mapping
Q50600503	Triangular Alignment (TAME): A Tensor-Based Approach for Higher-Order Network Alignment.
Q38506394	True path rule hierarchical ensembles for genome-wide gene function prediction
Q30396172	Twin removal in genetic algorithms for protein structure prediction using low-resolution model.
Q93004745	Two New Heuristic Methods for Protein Model Quality Assessment
Q92155600	Two-stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction
Q51603026	Two-step cross-entropy feature selection for microarrays—power through complementarity.
Q50873329	Typing Staphylococcus aureus using the spa gene and novel distance measures.
Q40553087	UDoNC: An Algorithm for Identifying Essential Proteins Based on Protein Domains and Protein-Protein Interaction Networks
Q46594577	Unconstrained Diameters for Deep Coalescence
Q33814218	Uncovering hidden phylogenetic consensus in large data sets.
Q90362928	Understanding Protein Networks using Vester's Sensitivity Model
Q94478618	Understanding the Limit of Open Search in the Identification of Peptides with Post-translational Modifications - A Simulation-based Study
Q30992733	Unfold High-Dimensional Clouds for Exhaustive Gating of Flow Cytometry Data
Q51930809	Unicyclic networks: compatibility and enumeration.
Q43562322	Unidentifiable divergence times in rates-across-sites models
Q47656658	Unified Deep Learning Architecture for Modeling Biology Sequence
Q102205249	Unit-vise: Deep Shallow Unit-Vise Residual Neural Networks with Transition Layer For Expert Level Skin Cancer Classification
Q38860750	United Complex Centrality for Identification of Essential Proteins from PPI Networks
Q90822376	United neighborhood closeness centrality and orthology for predicting essential proteins
Q51175210	Unrooted tree reconciliation: a unified approach.
Q54517564	Unsupervised Binning of Metagenomic Assembled Contigs Using Improved Fuzzy C-Means Method.
Q89498012	Unsupervised Discovery of Geometrically Common Structural Motifs and Long-Range Contacts in Protein 3D Structures
Q35769580	Unsupervised Structure Detection in Biomedical Data
Q94583477	Unsupervised learning framework with multidimensional scaling in predicting epithelial-mesenchymal transitions
Q51691457	Untangling tanglegrams: comparing trees by their drawings.
Q98200750	Use Chou's 5-steps rule with different word embedding types to boost performance of electron transport protein prediction model
Q93070848	Use of electronic health data for disease prediction: A comprehensive literature review
Q92962965	Using Chou's 5-steps rule to predict O-linked serine glycosylation sites by blending position relative features and statistical moment
Q98200700	Using Constrained-INC for Large-scale Gene Tree and Species Tree Estimation
Q89592967	Using Convolutional Neural Networks to Measure the Physiological Age of Caenorhabditis elegans
Q89558436	Using Emulation to Engineer and Understand Simulations of Biological Systems
Q31068677	Using Formal Concept Analysis to Identify Negative Correlations in Gene Expression Data
Q45735587	Using GPUs for the exact alignment of short-read genetic sequences by means of the Burrows-Wheeler transform
Q46767884	Using Gaussian process with test rejection to detect T-cell epitopes in pathogen genomes.
Q57596882	Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients
Q38398277	Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms
Q98654116	Using Symmetry to Enhance the Performance of Agent-based Epidemic Models
Q58610374	Using Unlabeled Data to Discover Bivariate Causality with Deep Restricted Boltzmann Machines
Q92659898	Using Weighted Extreme Learning Machine Combined with Scale-invariant Feature Transform to Predict Protein-Protein Interactions from Protein Evolutionary Information
Q46559332	Using kernel alignment to select features of molecular descriptors in a QSAR study
Q46447663	Using max cut to enhance rooted trees consistency
Q51654575	Using qualitative probability in reverse-engineering gene regulatory networks.
Q51212889	Using the maximum between-class variance for automatic gridding of cDNA microarray images.
Q31068182	Using uncorrelated discriminant analysis for tissue classification with gene expression data
Q91296634	Utilizing Deep Learning and Genome Wide Association Studies for Epistatic-Driven Preterm Birth Classification in African-American Women
Q38485081	Utilizing both topological and attribute information for protein complex identification in PPI networks.
Q46244407	VARUN: discovering extensible motifs under saturation constraints
Q91423095	Variable neighborhood search for partitioning sparse biological networks into the maximum edge-weighted k-plexes
Q90608781	Visual Life Sciences Workflow Design using Distributed and Heterogeneous Resources
Q38495847	Visual exploration across biomedical databases
Q34610504	Visual exploration of three-dimensional gene expression using physical views and linked abstract views
Q90109334	WMMDCA: Prediction of Drug Responses by Weight-based Modular Mapping in Cancer Cell Lines
Q46184354	Walks on SPR neighborhoods
Q38177159	Wavelet analysis in current cancer genome research: a survey
Q91296630	WeCoMXP: Weighted Connectivity Measure Integrating Co-Methylation, Co-Expression and Protein-Protein Interactions for Gene-Module Detection
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Q51423727	Weighted Markov Chain Based Aggregation of Bio-molecule Orderings.
Q93176084	XGBoost Model for Chronic Kidney Disease Diagnosis
Q40448854	YamiPred: A Novel Evolutionary Method for Predicting Pre-miRNAs and Selecting Relevant Features.
Q50795589	ZoomOut: Analyzing Multiple Networks as Single Nodes.
Q102330715	aWCluster: A Novel Integrative Network-based Clustering of Multiomics for Subtype Analysis of Cancer Data
Q40554198	acc-Motif: Accelerated Network Motif Detection
Q39862786	bLARS: An Algorithm to Infer Gene Regulatory Networks
Q40429405	cuBLASTP: Fine-Grained Parallelization of Protein Sequence Search on CPU+GPU.
Q91770720	deGSM: memory scalable construction of large scale de Bruijn Graph
Q47649091	fmpRPMF: A Web Implementation for Protein Identification by Robust Peptide Mass Fingerprinting.
Q98880612	frDriver: A functional region driver identification for protein sequence
Q50711082	gEFM: An Algorithm for Computing Elementary Flux Modes Using Graph Traversal.
Q39004883	hMuLab: a Biomedical Hybrid MUlti-LABel Classifier Based on Multiple Linear Regression
Q50701548	hc-OTU: A Fast and Accurate Method for Clustering Operational Taxonomic Unit based on Homopolymer Compaction.
Q92437949	iLncRNAdis-FB: identify lncRNA-disease associations by fusing biological feature blocks through deep neural network
Q40554187	iNJclust: Iterative Neighbor-Joining Tree Clustering Framework for Inferring Population Structure.
Q38404045	iPFPi: A System for Improving Protein Function Prediction through Cumulative Iterations
Q92394011	iPhosH-PseAAC: Identify phosphohistidine sites in proteins by blending statistical moments and position relative features according to the Chou's 5-step rule and general pseudo amino acid composition
Q90210851	imPhy: Imputing Phylogenetic Trees with Missing Information using Mathematical Programming
Q45962175	k-Information gain scaled nearest neighbors: a novel approach to classifying protein-protein interaction-related documents.
Q30995732	l2 Multiple Kernel Fuzzy SVM-Based Data Fusion for Improving Peptide Identification
Q102049147	miRCom: Tensor completion integrating multi-view information to deduce the potential disease-related miRNA-miRNA pairs
Q104683525	miRCoop: Identifying Cooperating miRNAs via Kernel Based Interaction Tests
Q57055864	miRTRS: A Recommendation Algorithm for Predicting miRNA Targets
Q90982593	nAPOLI: a graph-based strategy to detect and visualize conserved protein-ligand interactions in large-scale
Q90733294	ncRFP: A novel end-to-end method for non-coding RNAs family prediction based on Deep Learning
Q93172261	oComm: Overlapping Community Detection in Multi-view Brain Network
Q98200726	protein2vec: Predicting Protein-Protein Interactions Based on LSTM
Q125457162	scBKAP: A Clustering Model for Single-Cell RNA-Seq Data Based on Bisecting K-Means
Q99603490	scLRTD : A novel low rank tensor decomposition method for imputing missing values in single-cell multi-omics sequencing data
Q39743412	txCoords: A Novel Web Application for Transcriptomic Peak Re-Mapping.
Q45829504	uAnalyze: web-based high-resolution DNA melting analysis with comparison to thermodynamic predictions

medical journal	Q16024164
scientific journal	Q5633421

P7983	ACM Journal ID	tcbb
P6981	ACNP journal ID	2284030
		2283892
P1159	CODEN	ITCBCY
P8375	Crossref journal ID	30857
P1250	Danish Bibliometric Research Indicator (BFI) SNO/CNO	5759
P1058	ERA Journal ID	32004
P646	Freebase ID	/m/0h3n_4r
P8903	HAL journal ID	12373
P236	ISSN	1545-5963
		1557-9964
		2374-0043
P7363	ISSN-L	1545-5963
P1277	JUFO ID	57606
P1144	Library of Congress Control Number (LCCN) (bibliographic)	2003215338
P1055	NLM Unique ID	101196755
P856	official website	http://ieeexplore.ieee.org/xpl/RecentIssue.jsp?puNumber=8857
		http://portal.acm.org/browse_dl.cfm?idx=J954
		http://www.computer.org/portal/web/tcbb/home
P10283	OpenAlex ID	V36029991
P3181	OpenCitations bibliographic resource ID	172838
P7662	Scilit journal ID	1103575
P1156	Scopus source ID	17971

P495	country of origin	United States of America	Q30
P1240	Danish Bibliometric Research Indicator level	2
P571	inception	2004-01-01
P8875	indexed in bibliographic review	Science Citation Index Expanded	Q104047209
		Scopus	Q371467
P407	language of work or name	English	Q1860
P921	main subject	bioinformatics	Q128570
P123	publisher	Institute of Electrical and Electronics Engineers	Q131566
P1476	title	IEEE/ACM Transactions on Computational Biology and Bioinformatics

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