Markov clustering versus affinity propagation for the partitioning of protein interaction graphs

scientific article

Markov clustering versus affinity propagation for the partitioning of protein interaction graphs is …
instance of (P31):
scholarly articleQ13442814

External links are
P8978DBLP publication IDjournals/bmcbi/VlasblomW09
P6179Dimensions Publication ID1048267512
P356DOI10.1186/1471-2105-10-99
P3181OpenCitations bibliographic resource ID1144030
P932PMC publication ID2682798
P698PubMed publication ID19331680
P5875ResearchGate publication ID24244027

P50authorShoshana WodakQ6127170
James VlasblomQ64495236
P2860cites workUp-to-date catalogues of yeast protein complexesQ42029545
GenePro: a Cytoscape plug-in for advanced visualization and analysis of interaction networksQ42595813
Using protein affinity chromatography to probe structure of protein machines.Q44405261
The cell as a collection of protein machines: preparing the next generation of molecular biologistsQ46148013
Functional and topological characterization of protein interaction networksQ47866212
Least squares quantization in PCMQ55881521
Superparamagnetic clustering of dataQ74567124
An automated method for finding molecular complexes in large protein interaction networksQ21284295
Functional organization of the yeast proteome by systematic analysis of protein complexesQ24292209
Cytoscape: a software environment for integrated models of biomolecular interaction networksQ24515682
BioGRID: a general repository for interaction datasetsQ24538650
High-quality binary protein interaction map of the yeast interactome networkQ24651397
Network-based prediction of protein functionQ24670295
A novel genetic system to detect protein-protein interactionsQ27860915
Proteome survey reveals modularity of the yeast cell machineryQ27929510
Global landscape of protein complexes in the yeast Saccharomyces cerevisiaeQ27938796
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiaeQ29615775
Clustering by passing messages between data pointsQ31091773
Comment on "Clustering by passing messages between data points".Q31145882
Evaluation of clustering algorithms for protein-protein interaction networksQ33262820
Split ubiquitin as a sensor of protein interactions in vivoQ35849562
Interactome: gateway into systems biologyQ36257382
Network genomics.Q36717046
Identifying functional modules in the physical interactome of Saccharomyces cerevisiaeQ36763706
Interaction networks for systems biologyQ37087513
Protein networking: insights into global functional organization of proteomesQ37093734
The social network of a cell: recent advances in interactome mappingQ37209104
P275copyright licenseCreative Commons Attribution 2.0 GenericQ19125117
P6216copyright statuscopyrightedQ50423863
P4510describes a project that usesCytoscapeQ3699942
P433issue1
P407language of work or nameEnglishQ1860
P304page(s)99
P577publication date2009-01-01
P1433published inBMC BioinformaticsQ4835939
P1476titleMarkov clustering versus affinity propagation for the partitioning of protein interaction graphs
P478volume10

Reverse relations

cites work (P2860)
Q38505313A Fast Hierarchical Clustering Algorithm for Functional Modules Discovery in Protein Interaction Networks
Q33995062A comparison of the functional modules identified from time course and static PPI network data
Q38493528A novel link prediction algorithm for reconstructing protein-protein interaction networks by topological similarity
Q50422053A systems biology approach to predictive developmental neurotoxicity of a larvicide used in the prevention of Zika virus transmission.
Q92135733An Effective Graph Clustering Method to Identify Cancer Driver Modules
Q35206810Annotation of gene function in citrus using gene expression information and co-expression networks
Q33911818Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis
Q36093964CLIMP: Clustering Motifs via Maximal Cliques with Parallel Computing Design.
Q39397020Computational Detection of Stage-Specific Transcription Factor Clusters during Heart Development.
Q38019870Computational detection of protein complexes in AP-MS experiments.
Q38736165Constructing module maps for integrated analysis of heterogeneous biological networks
Q30580889Construction and application of dynamic protein interaction network based on time course gene expression data
Q56893340Correlation-based iterative clustering methods for time course data: The identification of temporal gene response modules for influenza infection in humans
Q34695037De novo prediction of cis-regulatory elements and modules through integrative analysis of a large number of ChIP datasets
Q28473983Deciphering diseases and biological targets for environmental chemicals using toxicogenomics networks
Q64102221Detecting Diagnostic Biomarkers of Alzheimer's Disease by Integrating Gene Expression Data in Six Brain Regions
Q37538017Detecting protein complexes from active protein interaction networks constructed with dynamic gene expression profiles
Q92322432Detection of dynamic protein complexes through Markov Clustering based on Elephant Herd Optimization Approach
Q24306136Dynamic protein-protein interaction wiring of the human spliceosome
Q33955900Dynamical basis for drug resistance of HIV-1 protease
Q95855962Fast Enhanced Exemplar-Based Clustering for Incomplete EEG Signals
Q33504906Finding local communities in protein networks
Q26774978Fundamentals of protein interaction network mapping
Q89665003Genome-wide inference of the Camponotus floridanus protein-protein interaction network using homologous mapping and interacting domain profile pairs
Q31144804Heterodimeric protein complex identification by naïve Bayes classifiers
Q47190089HipMCL: a high-performance parallel implementation of the Markov clustering algorithm for large-scale networks
Q34539738Identification of a functional connectome for long-term fear memory in mice
Q36218007Identifying functional modules in interaction networks through overlapping Markov clustering
Q33912070Identifying hierarchical and overlapping protein complexes based on essential protein-protein interactions and "seed-expanding" method
Q35102034Identifying protein complexes based on density and modularity in protein-protein interaction network
Q34659279Improved method for protein complex detection using bottleneck proteins
Q33759251Improving the quality of protein similarity network clustering algorithms using the network edge weight distribution
Q36446246Increased peri-ductal collagen micro-organization may contribute to raised mammographic density.
Q40246638Integrated systems analysis reveals a molecular network underlying autism spectrum disorders
Q24317038Interactome mapping suggests new mechanistic details underlying Alzheimer's disease
Q41702763Large-scale cross-species chemogenomic platform proposes a new drug discovery strategy of veterinary drug from herbal medicines.
Q30763657M-Finder: Uncovering functionally associated proteins from interactome data integrated with GO annotations.
Q38442694Methods for protein complex prediction and their contributions towards understanding the organisation, function and dynamics of complexes.
Q52767466Mining Major Transitions of Chronic Conditions in Patients with Multiple Chronic Conditions.
Q30826985Morphological Neuron Classification Using Machine Learning
Q42629148NWE: Node-weighted expansion for protein complex prediction using random walk distances
Q34401467Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences
Q34324344Optimizing high performance computing workflow for protein functional annotation
Q35102176PPSampler2: predicting protein complexes more accurately and efficiently by sampling
Q92131450PS-MCL: parallel shotgun coarsened Markov clustering of protein interaction networks
Q91869038Phenotype Prediction and Genome-Wide Association Study Using Deep Convolutional Neural Network of Soybean
Q33776327Prior knowledge based mining functional modules from Yeast PPI networks with gene ontology
Q51014077ReSAPP: predicting overlapping protein complexes by merging multiple-sampled partitions of proteins.
Q33766571Recent advances in clustering methods for protein interaction networks
Q45955202Revealing shared and distinct gene network organization in Arabidopsis immune responses by integrative analysis.
Q26748815Review on Graph Clustering and Subgraph Similarity Based Analysis of Neurological Disorders
Q24317056Systematic identification of molecular links between core and candidate genes in breast cancer
Q44876881The MORPH algorithm: ranking candidate genes for membership in Arabidopsis and tomato pathways.
Q30836672The Potential of Automatic Word Comparison for Historical Linguistics
Q35618276Time dynamics of protein complexes in the AD11 transgenic mouse model for Alzheimer's disease like pathology
Q56889970Toward a systems level view of the ECM and related proteins: a framework for the systematic definition and analysis of biological systems
Q36050271Uncovering Arabidopsis membrane protein interactome enriched in transporters using mating-based split ubiquitin assays and classification models
Q35005792Using graph theory to analyze biological networks
Q35174044Using network clustering to predict copy number variations associated with health disparities
Q31043700Which clustering algorithm is better for predicting protein complexes?
Q34070756clusterMaker: a multi-algorithm clustering plugin for Cytoscape

Search more.